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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0197400 |
| Transcript ID | LotjaGi4g1v0197400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ras-related protein, putative; TAIR: AT4G17530.1 RAB GTPase homolog 1C; Swiss-Prot: sp|Q9SEH3|RAD2C_ARATH Ras-related protein RABD2c; TrEMBL-Plants: tr|I3T7J4|I3T7J4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0197400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:45397971..45398979) extracted from Lotus japonicus Gifu genome v1.2.
AATCTCCCATGTAGCCAAGAATCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTAATGTTTAAT GTAACTATCATTTTGTTCATTTACAAAGTGGCTAATTCCAAGTTGTTTGCGGTCAAGTATGTCCTTGGTTCATTCAAACA ATAATATTTGAGGGCTTATGGTTACTCATAAAAATTAGGAAGTTAAATTTTTTAGAACACTCCATCCCAATTATCTGGGA TTATTGCTTTATTGTGTTTTGTAATTGTTGAAAGTTTTTTGTGCATTTTTTACTGTATAGTGGGACACTGCTGGTCAAGA ACGTTTCCGGACAATCACAAGCAGCTACTACCGTGGGGCTCATGGCATAATTGTAAGTCTTTCTAAACTTGTCCTTCCCC AGAATTTTTTTGATACATAGGTGTAATCTTATTGGAACTTTTGTAGGTTGTTTATGATGTCACTGACCAAGAGAGCTTCA ACAATGTTAAGCAATGGCTGAATGAAATTGACCGTTATGCAAGTGAAAACGTTAACAAGCTTCTAGTTGGAAACAAGTGT GATCTCACGGCAAATAAAGTTGTGTCCTATGAGACAGCAAAGGTGATTCTTAATTTGTTGATTAATGTCCCATGGGACAC CCATTGAATCCCTTTCTTTTGTCTAATGTTTTGAAGTTTGTGCTTGCTGTTTTTCAGGCATTTGCAGATGAAATTGGAAT TCCTTTCATGGAAACTAGTGCTAAGAACGCCACCAATGTGGAGCAGGCTTTCATGGCCATGGCTGCTGAAATTAAAAACA GGTGCGGTATCTTGAATATCCCTATATTTGTTAGACTAATTAATTGTCTACTGTTGAGATTTTTGTCTAAGTTTGTGAAG TTCAATGAATCTTTACTTGTGTTTCTTTCTCACAGAATGGCAAGCCAACCAGTGAACAATGCAAGGCCTCCAACAGTCCA AATCCGAGGACAGCCAGTGAATCAAAAGTCTGGTTGCTGCTCGTCTTAG
CDS sequence (LotjaGi4g1v0197400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTAATTGGGACACTGCTGGTCAAGAACGTTTCCGGACAATCACAAGCAGCTACTACCGTGGGGCTCATGGCATAAT TGTTGTTTATGATGTCACTGACCAAGAGAGCTTCAACAATGTTAAGCAATGGCTGAATGAAATTGACCGTTATGCAAGTG AAAACGTTAACAAGCTTCTAGTTGGAAACAAGTGTGATCTCACGGCAAATAAAGTTGTGTCCTATGAGACAGCAAAGGCA TTTGCAGATGAAATTGGAATTCCTTTCATGGAAACTAGTGCTAAGAACGCCACCAATGTGGAGCAGGCTTTCATGGCCAT GGCTGCTGAAATTAAAAACAGAATGGCAAGCCAACCAGTGAACAATGCAAGGCCTCCAACAGTCCAAATCCGAGGACAGC CAGTGAATCAAAAGTCTGGTTGCTGCTCGTCTTAG
Protein sequence (LotjaGi4g1v0197400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFNWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKA FADEIGIPFMETSAKNATNVEQAFMAMAAEIKNRMASQPVNNARPPTVQIRGQPVNQKSGCCSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 144 | 144 | 26.099 | – | |
| SMART | 1 | 113 | 113 | 8.1E-7 | – | |
| SMART | 1 | 114 | 114 | 5.0E-10 | – | |
| SMART | 2 | 114 | 113 | 6.9E-48 | – | |
| Gene3D | 2 | 142 | 141 | 2.6E-49 | – | |
| PANTHER | 4 | 143 | 140 | 5.6E-76 | – | |
| PANTHER | 4 | 143 | 140 | 5.6E-76 | – | |
| Pfam | 4 | 112 | 109 | 1.7E-43 | ||
| TIGRFAM | 4 | 106 | 103 | 8.6E-19 | ||
| SUPERFAMILY | 4 | 121 | 118 | 2.11E-42 | ||
| MobiDBLite | 119 | 144 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi4g1v0197400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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