Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0197600 |
| Transcript ID | LotjaGi4g1v0197600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat superfamily protein; TAIR: AT4G04790.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q6NQ81|PP304_ARATH Pentatricopeptide repeat-containing protein At4g04790, mitochondrial; TrEMBL-Plants: tr|A0A151RX14|A0A151RX14_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0197600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:45463025..45466784) extracted from Lotus japonicus Gifu genome v1.2.
GGTCCATCGGGTGTTCTCTACCATACATCACTACAATCTGGAATCAAATGATGAAACGTTCAGACGTATGATAGATTTGT TCATGAAGATGAAAGATGTGAGTCTCTACTAATTTCATCTACAAGCTTTTATTCAGTCTACTAATTTTTTTTAGTATCTT GCTAGATATCTATAGTGGTATTAATTTGGTGAGTTGTTGTTAATGTTAACCCTTCATCAAATTTATTCTTTTTATGTGGT CTCATAATGCAGTTTGAAGGTGCATACAGGATGCTTGATGATTTGAAGGGAATGAATATGGTGCCGACAACAGGCATGTA CAATGCCATAATGGCAGAATGTTTTCGAGAGGTGATGTCTCTATTATCGAGAATGCCTCTGCATTCTCTTGTATAGGTTT TTTACTATTTCTCCTAGGAGATTGGAATGGTTTGCTTATACTTAAAATGTGATTTCTGCTGATTTTTCACTGGTTCTGAC TAAACAGTCAGAACATAAAGGCCTAGATGGTTCAAGAAGAGTAGTGCTTAGAATTTTCTCATATCCGCACTAGTTAAACA TGTAGATGGATGGAGTTTTGGAGCAATTTTCAGTGGTGATATTTATGGTTCATGGCTCTTTTTATTTTGATGTAGATTAT AGATGTGATGCAAATCCCTGGACGAGGTTATTCCTATCTCCTAGACTTTTTTGGGCTAAGGGAGTTTCATCAATCTTGCC CTGTCTAGAAATTTATAGCCAACTGTGGACTTTTATTTTTCAGATTAGGCAAGGTTATCTGGGTAATCCATCGCCCTCAA TATAATTTTGCAATGCAAAAGCATTCTGATGGTTTCTGTTAATAATTTGTTACTGATAATAGTTATATCTCAAGTCTCAA ATATTTTGACCATTTAAAGATGTATTTAAATCAACATTTCATCGGCATCAAATAAAGCATTCCTTTGCTGAAATTTTGCA GAGAAACATTAGTGATGGGGGAGGGTCTTTGAACAAATGCAATGTGCTGATATAAAACCTGATTCACAGACTTACAGCCA CCTGATTTCCAACTCTGAAACTGAAGAAGATATAGTAAAGGTATGTTGTCTGGATAATAGTTTCTCACATATAATCTGAA TTGAATAAACTCATCTATTTCATCTTGGCTATTTTTTTCATCATTATTTACATGTTTGTGTCCAGGTTTTTGTTATTTGT TATATTCTTTCCAATGTTTACATAGACTTTTAAGATTACATTGCAAAAATTAAGTTCTATTGATCACATTCAAGAGAAAT TGCATTGTTTGTTGATATTTTTTCTACTTTGGTTCTAGTTCATTTAAAGAGCTCCCTGGTGAATTTTTTCAACGTTATCA TGCTTTCTGGCAATCAGCATATGGCTGTCCCCCTTTTGTTTATTTATGCTAACATTGATAAACTGAAGTATGTAAGAAAG ATTTGCTGTCTACGGATGTGTTGAAAGATTAAAATTTTGTTTCAATATCAATTATATCATTCTTATAGTATTATGAAGAA CTGAAGCATTATGGAATTCGAGCTACAAAGCAAATTTTCACAGCACTCATAAATGCTTACGCTGCGTGCGGACAGTTGGA GAAAGCTAAACAGGTATGGATGCCGTAAATAATGCTGCCTTGAACTAGATCTTGGTCCAAAAAATATGGATTGATTAACA AGCGTCTTTCTTTTTTTAGAGTAACTATTTGAACGATAAAATTGATGTAAAACTGCATGTGGATCTATCTCATGTTTAAA CAATTACTTGGGTTGTAAGTTTTTGCTGACCAGATTGATTTTACAAATCTATTAGCATATGTACGTTCTGAACTATAGGG ATTGTTTTAAAATATTCTTCAAGAACTGAAGTATGGAGATCAGTGTTGTGGACTTTACCTTTTCTGATTTAGCCAACAAC AATACCTACTCTTTTATCTTTTCAAGCTGCAAAATATACTTTTCAATTAAATTTTCAAGGTGCCAAATGCAGTTTCAAGA AAGCGTCTGCCCTCCTACTTCCTATATATCATCATTATCTATTTTTGAAGGATTTGGATCCCCTCATGTTAAATGGCCAC TCGTACTATTCATGGTTATTCTTAAATGGCCAGTCTTCATGGAGAGAGAATTTTTTACTTTTTTACCCGAGGTTCTATAT GTTTCTCCTGTCTTTCTGTATTAAATATGCGACCTAAATATACTCATTCTTGAGTCATAACAATCTACTCTTATGAAGCT AAATTGGCTTCAATAGTATGAATAGTGAATACGATTATGGATATGTTATCTACATCCTAATTGAATATTCACTGTAAATG CTTTCAGCCTATATAACTTCTGTTTGCTTTACCTAGTGCAATTTCCTCTTTTTCTTGAGCTCCTTGATACTGTAATTTCA GTGACTTCTGGACTCACTAAAATAATAGGTTTCATATACCAATCTTCTGGACTATATAACATGCATACCATCTATTATTT GCTTACAGCACTGAGTAACCTTTTATGGGGATCTCATTAACCCTTCACGTTGCAGGTAATCTTAGACCCATTGATACCAA TGAGAAGCTTGAACCAAATCAAGAGTGTTCTTGTCTCAGTTCTTGCATCACATGGGCAATTGTTTGAGGCTTTTCTTATT TACAATGAAATCAAGCAAGTTGGACACACTCTAGAGCCAAAAGATGTTATGAGTCTCATTGTAAGGTTTTCAATACATCA GAAATTTTTATAATTTTTAACTCACAAGCATTCACAATCAACCCATCGGCCATTCATAGGAGCACATTCGTTCCGACGGA GAGTTGGATAGGTTGCTTCTGCTACTTGAGGAATCGAAAGGTACAGACCATTGGAATGATGCTTGCTGCAGAATCATCTT GTATTGTATTTGGAATAAACAGTTAAGGTTTGTTTTTCTCCCCCTTCTTTTATTGAATTTCTTTGCACTTAAAATGTATT CGCCATTTTCCTTATGATCATTTTGTTCTGGGTCAGTTCTGCTATTGACTTGTGTAAGCTCCTCAAGGAAAAGCTCGAAA GTGATGAAAAATTTATGGAAGTTCTCTTTGATAAGGTTGGCTCTGGGCTCCTTTTTATGTACTTCGTATATTCAAACTGC TTCCACCTTCATGATGTTTGTTCAATTAGCCTACTTGACATGTTGACAACAATTTTCACTGAATTTATACAGGTATTTTC GCTAATCGAACGGTCAGAGTCGAATCATCTGAACACTTGTCTCAATTTGCTTTCAGAAATCAGGGATAAAATTGGCACTT TGCCTTCACAGAAATGTTATGATTCTCTATTTTGTGCTCGTGCCGACGCCACTGATTCTGAATGAGGCTCCTTAATGTAT ATGTAGTGCTCCTCATCAAATTTCTTACTAATAGGTGCAGATGTACATACAAATTGACCCCTCTAACAAATTTTATAACC AATTTTCCCTGAGTGCAATTTTAGAATTGCCCTCACAATGTTTTGCTCGCAAGGAAAAAGTATGATATTTGTACTAAATG ATTATATTTAATATAAACTCCTGACAATATAAATGCAATATTGATTCTGATGAAAAGAAAAGTGCAAGAACTAAGTGATG CAATATCAAGTTTGAAAATCTTTCTAATTAAAATCAATTTTAGATAAAAGCGCATGTCATAGGATCATAGCTTTTTAGAA TTGATTCTGATGCAAAGAAGCTGAGCCAAACATGTTATAAGTATCTTTGAGAGGGATCCCTACATAAACGCCCAATAAAG
CDS sequence (LotjaGi4g1v0197600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAATGTGCTGATATAAAACCTGATTCACAGACTTACAGCCACCTGATTTCCAACTCTGAAACTGAAGAAGATATAGT AAAGTATTATGAAGAACTGAAGCATTATGGAATTCGAGCTACAAAGCAAATTTTCACAGCACTCATAAATGCTTACGCTG CGTGCGGACAGTTGGAGAAAGCTAAACAGGTAATCTTAGACCCATTGATACCAATGAGAAGCTTGAACCAAATCAAGAGT GTTCTTGTCTCAGTTCTTGCATCACATGGGCAATTGTTTGAGGCTTTTCTTATTTACAATGAAATCAAGCAAGTTGGACA CACTCTAGAGCCAAAAGATGTTATGAGTCTCATTGAGCACATTCGTTCCGACGGAGAGTTGGATAGGTTGCTTCTGCTAC TTGAGGAATCGAAAGGTACAGACCATTGGAATGATGCTTGCTGCAGAATCATCTTGTATTGTATTTGGAATAAACAGTTA AGTTCTGCTATTGACTTGTGTAAGCTCCTCAAGGAAAAGCTCGAAAGTGATGAAAAATTTATGGAAGTTCTCTTTGATAA GGTATTTTCGCTAATCGAACGGTCAGAGTCGAATCATCTGAACACTTGTCTCAATTTGCTTTCAGAAATCAGGGATAAAA TTGGCACTTTGCCTTCACAGAAATGTTATGATTCTCTATTTTGTGCTCGTGCCGACGCCACTGATTCTGAATGA
Protein sequence (LotjaGi4g1v0197600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQCADIKPDSQTYSHLISNSETEEDIVKYYEELKHYGIRATKQIFTALINAYAACGQLEKAKQVILDPLIPMRSLNQIKS VLVSVLASHGQLFEAFLIYNEIKQVGHTLEPKDVMSLIEHIRSDGELDRLLLLLEESKGTDHWNDACCRIILYCIWNKQL SSAIDLCKLLKEKLESDEKFMEVLFDKVFSLIERSESNHLNTCLNLLSEIRDKIGTLPSQKCYDSLFCARADATDSE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 236 | 236 | 1.8E-104 | – | |
| PANTHER | 1 | 236 | 236 | 1.8E-104 | – | |
| Gene3D | 1 | 159 | 159 | 2.0E-14 | ||
| Pfam | 45 | 65 | 21 | 0.0062 | ||
| Pfam | 81 | 106 | 26 | 0.084 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0197600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…