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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0200500 |
| Transcript ID | LotjaGi4g1v0200500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MYB transcription factor; TAIR: AT5G47390.1 myb-like transcription factor family protein; Swiss-Prot: sp|Q9FKF9|M5162_ARATH Probable transcription factor At5g61620; TrEMBL-Plants: tr|A0A0S3R5R0|A0A0S3R5R0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0200500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:46529028..46534006) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAGCACACAACCCTATCACGCAAAGCTGAAGAAGGTACACAACTCTATCTTAACCCGCGAAGCACTGGATCAACGCC CTGTTTTATCCACGACAAGATAAATGGATAGTGTTGAGTTGTTAACCTCCTCTCTTTCTATCCCATCTGCGAAAGCCTAG GGAGACCAAACCAAAAACCTTAAAAAATAAAAATAAAAAAAAAACCAAAATTAAGACACAAAATCCATTCAGTACTTCTC TAACCTTAAAACCCTCAAAAATTTCCATGTGTCGGAACCTGTGATTCGGATCCCAACAACACAGTCCCTTCCTTCCCTCG TTCGATCCGCTTCGGAACGCCGCCATGACCCGGCGATGCTCGCATTGCAGCCATGGTGGCCACAACGCCAGGACCTGCCC CAACCGCGGAGTCAAGCTTTTCGGTGTCCGATTGACTGATGGCTCGATCCGGAAGAGTGCTAGTATGGGTAATCTCACCC ACTACACTGGCTCCGGGTCTGGACCTCTTCTTGGTGGGTCCAATAACCCTGATTCTCCCGGTGAAACCCCTGATCACGCC GCCGCTGCTGACGGTTACGCCTCTGAGGATTTTGTTCCTGGCTCTTCTTCTAGCTCCCGTGAAAGAAAAAAGGGTTTGAT TCCTTACCCTTTTAATTTTGCTTCAGTGTTGTTTTTGTGAATTGCATGCGAGTTTTTAGGCTTTGTTTGGATTAATTGTG TGATCTTAGTTTTGTGTTTTTTTGGCTGGTGTCACTGTGGGAATAACTAGAGAGGAAAGGTGCAGGTTAGCTTTATTAGA GATTGTCTTTTTTAGGTGAATTATTGCAATTTTTGTACCACATGCTTGGCTGGATAGATTTTGAATCGGAACTTCATTCA ATGTTTGGTGGACAATGAAATTGATGGATGGAGTTATTGATCTCAACTCACGTGCTTTAAAAACAAGTTTCTCTTTCTCA TATAACTCAATGAAGTTTCTAATCATTATGGTGTCTGTCCAAGTTTTTTTTCTGTGACCCTTTGAGAAATGTACAGGTTA ATGAACTCTTTAGCCCAGTGAACAACTTGTGTATTAAGGGGTAAAAGATCATTCTGCCTAGTTTCGAATGGATTATTGTT TGCTTACTTTGGATGTGTATCCTAATTATGGGGGCATGTGGTGTAGGTCGTATGCATATATTTCACTATATCAGCTATAT GGAGATTGGAGATTGCTGCCATAGCTGTTAACTAGTATGTTTATTTAAAAAGATAGATACCTGTTAGTTCAAATAGGTTT GTGTAAGTTTAACAGGCATTGAATGCCAAATCTATATGACTATATTGATGATTGATGTGCTACTTGTGCTGTGTGTTTCC CCCGACACCAATGAGGCAATAAGCCAACCTCTGCAGTACTTGTAGTGGGTTGAATGGCTTACCTGACCCTTATGGCCAAG ACCAAGGTTAACGTGACAGAATTCCACGTCCTGCACTCGGGAAGTGCCCAGAAAACTTGGGGGGTGAACATGGCCGTCTC TGGCCTCCTTGTCGCAGCAGACCACAGCCATGTACAAAGGGAGTGGAGACCAGTAGTATACAGGGAATTCTCTTTATTTA CAGTAGAACAGGAAAGTTTATTGGTATCTAGACTCTTAAGAACTTATTTTGGCTCATGGAGTTGTAGGATTGACCCGCTT ACAATTCACAAAGCATGTACAATTGTTGCTACCAATTACAAATAGTATATTGTCCCATATAGAAACTCCGGCAGAAAAAG TCACGGCACAGATTCAACTTTATAGGTCTTTGTTTGGTCCACACTGTAACCACAGTTGATATCTTGGCTAGGTTGGTTAC CTATTCCCCCCTACACCCTACACATCCACCCGTAAAAAGTTTTTGAACATTTTTAAAACCAGGGGAGGGGGAGTTTACCA TGTGATTCTTTGAGTCATGTTATTCTTCTTCAATTGATTCCTTGATAAAATCAAGGATACACATGGTGGAGCAGTTGTTA GATTTTGTAAAATCTAGTTTCACTATTGGGATGGACATGGGTTTATGGGGGGTGGGAATTGGTCGAATGACTCATAAGGG GCCTTTTCCAAGTCTCTGATAAGTTTGGGGCTTGTGAAAAGGTTTATTTATTTATTATTTATAGCTAATTTAAATTTTAT TAAGTCTTACAAAATTTATAAATTATGTTTATGTATTTCATACATGATGTATTTGTTATATGTTATATATATTTGAAAAC TTAAGAGTTTAAATTTCTTGGTCTATTTGAAAACTTTTATGTAATTTGAGACTTTAAGTAGGCTTGGCTATCAGGCAAAA CTAGACTTTCGTATTTGCACAAAAGGGCCAGGTTGGTCCCAAATATAAAAAGGCTATGAGAGGAATTATGCTAGGCTATG GCTGGTGTTTAGCAGAACAGGTCCAGCCCTATTGAAGCTAAATTTAGCCTAGCTTATTCTACCTAATAATATGTAAGCAT TAGCCGAATCTGCATTTTTTTATGATTATTTCATAGTTTTATCACATAGCTTCCAAGAGGCTCACAAATATGTAATTGTA ACTTGTCTAACTTTTTTTTTATAAGCAATCATGTATATTAAAAACTAGCACAAGGGGTGCTAGAACCCAAAGCAACAATA CAAAACAGAAATTCCCAAAGCAATAGAGATAAACTCCAGTGCACAAGGGAAAACATGAAGGTAACGAGCGAAACAAAGAC AGCTAAGAAAACTAAATGCAGCAGCTACCAGACCCAATTTAGTAGATTCAAGAGAATCACTAAAACCCATCATTTCAAGG AGAGGAATCAGCTCCCTCCCTTTACCCAATCATTGGTCAGATGCCACCAAGACATGCCATTGGATTAGTTAACCATTCAA ACATAGATGAGTTAAAAGCCTTGCTTTTCGCGAACAGCCATTTCCATGCTGTCTAACTTACTTCCTCCTCTAGTGCTGTT GTGTAAGTATTTGCTGAATATGTATTCTGTAGTGTTCTTTTCACATTACACTTAGCTCCAATAAGGCTTTCAAATCTTAA ATGCTGACAAGCCTAACATATTTAATTTATGATCCATTTATGGCCCAACTTGGAAAATCTTTTATGTTGCAGTTTTTCAA GGTTTTATTAATAAGTTCTTATATGCAGGCACTCCATGGACTGAGGAGGAACACAGAATGTTTTTACTTGGATTGCAGAA ACTGGGCAAAGGTGATTGGCGTGGAATTGCAAGGAACTATGTTATTTCAAGGACACCTACTCAAGTGGCCAGTCATGCTC AGAAATATTTCATCAGGCAAAGCAATGTGTCTAGGAGAAAGAGACGGTCCAGCTTGTTTGATATTGTTGCAGATGATGTT TGTACCCTTATTGGAAATACTATGCGTGAAACATGTGTTTCTTTCACATCAATATGCATATAATGAAATTGACGCATCAT AACCTGCTCATTGCCATCAATAAGATTTTCAAAATGTGTTTCTTTGAATATAATATGACCTGTTTGGCTTCTGTTATGAC AAAGTTAATCTCATGCATACATTGGTTGTAATTTGTGAAAATTGTCCATTTCCTTTCTTCTTCACCAGCTCTGACAATTT TGGATATTGACTGCCCCATTCTGCATTCAGATAATGATTATATAGACCATTTATAAAACCACAGCTCTAGGGTAGTTTGT ATTCTTTGAAATCTCCATTATTGGAAATATGTGACTCTTCTTGCTCTTTTACCTTGGAGCATTCTCATTTTTCTGGGTTT CCTGTTTATGTTGATTTTGTAGGCGTCCGACACTCCAATGGTAGAGCAAGACTTCTTGTCAGCTAATCAGCTACAGACTG AAACAGAAGGCAATAACCCTTTGCCTGCTCCTCCTCCCATTGATGAAGAGTGTGAATCCATGGATTCCACAAACTCAATA GATGGAGACTCTGCCCTGTTAAAGCCCGACACTCCAATACCGCCAACCTACCCGGTGTTATATCCTGCATATTATCCTCC ATTCTACCCGTATCCTCTGCCTTATTGGTCTGGATACAGTCCTGCAGAGCCCCCAAAGAAAGAGGAGACACATGAAGTGG TGAAGCCAACTGCGGTGCTTTCCAAAAGCCCAATCAATGTGGATGAACTTGTCGGCATGTCAAAACTGAGTTTGGGAGAC TCCATTGGTGACTCTGGCCCCTCCTCTCTGTCTCGAAAACTCGTCGAAGAAGGACCTTCCAGACAATCAGCTTTTCATGC TACTCCAGCATGTGGCAGTTCAAATATAAATGGCAGTGTCATACATGCAGTTTAAGAACTGTTCTGGGAGCGTTATGAAA ATCAATATGTGGTCTTGTGCATCATATATCTGGATGTGAGATAAGATAACCTTAGTATTTTTCTTCTTTTACAGCTATTA ACCTAGTTTGTTTATTTGCTGGTAGGCAGTAGCATCTAGGAATTACTTGGGTCTAAACTATGTTTGTTAGTAATTTCATT TCTCAGGGTTGTGTAATGTAAAGTTGGTTGTGCAGTTTGACAACCTCTAGCAAGTTGTGCTTCCTTTTAAGTACTGGATT AGAATGTTCAAGTATTTTTTTTATTTAACCTCGACCTCGCTTGCTAAAATGCATGTTTGGAGATTTTTTTACAACTGAAG AGACCTTCGTGTGCTCCCCCTCATAACGCAACAGTGGTATTAGAGTCGAGTCGAGTGTGAGACCTTGGTAATCGATAGTT TCTGCTGAGGGGAGTATGCATGGTAATGCGGTAACTCAGACTTGAGGGAGATAATGTTGAGAAAAATGAAGTGATTATAT AAGAGATAACCCAAGATTTTAATGTCTTAAGGTTTTGAGTAAAAATGTGGTGTTATTCTCTCGATAATTCTTTGTTAGCC CAATGTGGTTTGTAGGGAGACTTCCATACCCCTTTTATGATGCACAATTGTGCTTTAGTGATGGGAATGGAGTGTGTTGG GCAATGATGGAGTGGAAGG
CDS sequence (LotjaGi4g1v0200500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACCCGGCGATGCTCGCATTGCAGCCATGGTGGCCACAACGCCAGGACCTGCCCCAACCGCGGAGTCAAGCTTTTCGG TGTCCGATTGACTGATGGCTCGATCCGGAAGAGTGCTAGTATGGGTAATCTCACCCACTACACTGGCTCCGGGTCTGGAC CTCTTCTTGGTGGGTCCAATAACCCTGATTCTCCCGGTGAAACCCCTGATCACGCCGCCGCTGCTGACGGTTACGCCTCT GAGGATTTTGTTCCTGGCTCTTCTTCTAGCTCCCGTGAAAGAAAAAAGGGCACTCCATGGACTGAGGAGGAACACAGAAT GTTTTTACTTGGATTGCAGAAACTGGGCAAAGGTGATTGGCGTGGAATTGCAAGGAACTATGTTATTTCAAGGACACCTA CTCAAGTGGCCAGTCATGCTCAGAAATATTTCATCAGGCAAAGCAATGTGTCTAGGAGAAAGAGACGGTCCAGCTTGTTT GATATTGTTGCAGATGATGCGTCCGACACTCCAATGGTAGAGCAAGACTTCTTGTCAGCTAATCAGCTACAGACTGAAAC AGAAGGCAATAACCCTTTGCCTGCTCCTCCTCCCATTGATGAAGAGTGTGAATCCATGGATTCCACAAACTCAATAGATG GAGACTCTGCCCTGTTAAAGCCCGACACTCCAATACCGCCAACCTACCCGGTGTTATATCCTGCATATTATCCTCCATTC TACCCGTATCCTCTGCCTTATTGGTCTGGATACAGTCCTGCAGAGCCCCCAAAGAAAGAGGAGACACATGAAGTGGTGAA GCCAACTGCGGTGCTTTCCAAAAGCCCAATCAATGTGGATGAACTTGTCGGCATGTCAAAACTGAGTTTGGGAGACTCCA TTGGTGACTCTGGCCCCTCCTCTCTGTCTCGAAAACTCGTCGAAGAAGGACCTTCCAGACAATCAGCTTTTCATGCTACT CCAGCATGTGGCAGTTCAAATATAAATGGCAGTGTCATACATGCAGTTTAA
Protein sequence (LotjaGi4g1v0200500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTRRCSHCSHGGHNARTCPNRGVKLFGVRLTDGSIRKSASMGNLTHYTGSGSGPLLGGSNNPDSPGETPDHAAAADGYAS EDFVPGSSSSSRERKKGTPWTEEEHRMFLLGLQKLGKGDWRGIARNYVISRTPTQVASHAQKYFIRQSNVSRRKRRSSLF DIVADDASDTPMVEQDFLSANQLQTETEGNNPLPAPPPIDEECESMDSTNSIDGDSALLKPDTPIPPTYPVLYPAYYPPF YPYPLPYWSGYSPAEPPKKEETHEVVKPTAVLSKSPINVDELVGMSKLSLGDSIGDSGPSSLSRKLVEEGPSRQSAFHAT PACGSSNINGSVIHAV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 336 | 336 | 2.2E-190 | – | |
| MobiDBLite | 1 | 20 | 20 | - | – | |
| PANTHER | 1 | 336 | 336 | 2.2E-190 | – | |
| MobiDBLite | 40 | 101 | 62 | - | – | |
| MobiDBLite | 40 | 66 | 27 | - | – | |
| ProSiteProfiles | 92 | 148 | 57 | 20.018 | ||
| SUPERFAMILY | 94 | 149 | 56 | 1.22E-16 | ||
| TIGRFAM | 95 | 147 | 53 | 6.9E-19 | ||
| SMART | 96 | 146 | 51 | 4.3E-11 | ||
| Gene3D | 98 | 150 | 53 | 2.0E-15 | – | |
| Pfam | 99 | 143 | 45 | 1.4E-10 | ||
| CDD | 99 | 144 | 46 | 1.04112E-9 | ||
| MobiDBLite | 186 | 221 | 36 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi4g1v0200500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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