Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0200500 |
| Transcript ID | LotjaGi4g1v0200500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MYB transcription factor; TAIR: AT5G47390.1 myb-like transcription factor family protein; Swiss-Prot: sp|Q9FKF9|M5162_ARATH Probable transcription factor At5g61620; TrEMBL-Plants: tr|A0A151SKZ3|A0A151SKZ3_CAJCA Myb-like protein J; Found in the gene: LotjaGi4g1v0200500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:46529372..46533322) extracted from Lotus japonicus Gifu genome v1.2.
ATGACCCGGCGATGCTCGCATTGCAGCCATGGTGGCCACAACGCCAGGACCTGCCCCAACCGCGGAGTCAAGCTTTTCGG TGTCCGATTGACTGATGGCTCGATCCGGAAGAGTGCTAGTATGGGTAATCTCACCCACTACACTGGCTCCGGGTCTGGAC CTCTTCTTGGTGGGTCCAATAACCCTGATTCTCCCGGTGAAACCCCTGATCACGCCGCCGCTGCTGACGGTTACGCCTCT GAGGATTTTGTTCCTGGCTCTTCTTCTAGCTCCCGTGAAAGAAAAAAGGGTTTGATTCCTTACCCTTTTAATTTTGCTTC AGTGTTGTTTTTGTGAATTGCATGCGAGTTTTTAGGCTTTGTTTGGATTAATTGTGTGATCTTAGTTTTGTGTTTTTTTG GCTGGTGTCACTGTGGGAATAACTAGAGAGGAAAGGTGCAGGTTAGCTTTATTAGAGATTGTCTTTTTTAGGTGAATTAT TGCAATTTTTGTACCACATGCTTGGCTGGATAGATTTTGAATCGGAACTTCATTCAATGTTTGGTGGACAATGAAATTGA TGGATGGAGTTATTGATCTCAACTCACGTGCTTTAAAAACAAGTTTCTCTTTCTCATATAACTCAATGAAGTTTCTAATC ATTATGGTGTCTGTCCAAGTTTTTTTTCTGTGACCCTTTGAGAAATGTACAGGTTAATGAACTCTTTAGCCCAGTGAACA ACTTGTGTATTAAGGGGTAAAAGATCATTCTGCCTAGTTTCGAATGGATTATTGTTTGCTTACTTTGGATGTGTATCCTA ATTATGGGGGCATGTGGTGTAGGTCGTATGCATATATTTCACTATATCAGCTATATGGAGATTGGAGATTGCTGCCATAG CTGTTAACTAGTATGTTTATTTAAAAAGATAGATACCTGTTAGTTCAAATAGGTTTGTGTAAGTTTAACAGGCATTGAAT GCCAAATCTATATGACTATATTGATGATTGATGTGCTACTTGTGCTGTGTGTTTCCCCCGACACCAATGAGGCAATAAGC CAACCTCTGCAGTACTTGTAGTGGGTTGAATGGCTTACCTGACCCTTATGGCCAAGACCAAGGTTAACGTGACAGAATTC CACGTCCTGCACTCGGGAAGTGCCCAGAAAACTTGGGGGGTGAACATGGCCGTCTCTGGCCTCCTTGTCGCAGCAGACCA CAGCCATGTACAAAGGGAGTGGAGACCAGTAGTATACAGGGAATTCTCTTTATTTACAGTAGAACAGGAAAGTTTATTGG TATCTAGACTCTTAAGAACTTATTTTGGCTCATGGAGTTGTAGGATTGACCCGCTTACAATTCACAAAGCATGTACAATT GTTGCTACCAATTACAAATAGTATATTGTCCCATATAGAAACTCCGGCAGAAAAAGTCACGGCACAGATTCAACTTTATA GGTCTTTGTTTGGTCCACACTGTAACCACAGTTGATATCTTGGCTAGGTTGGTTACCTATTCCCCCCTACACCCTACACA TCCACCCGTAAAAAGTTTTTGAACATTTTTAAAACCAGGGGAGGGGGAGTTTACCATGTGATTCTTTGAGTCATGTTATT CTTCTTCAATTGATTCCTTGATAAAATCAAGGATACACATGGTGGAGCAGTTGTTAGATTTTGTAAAATCTAGTTTCACT ATTGGGATGGACATGGGTTTATGGGGGGTGGGAATTGGTCGAATGACTCATAAGGGGCCTTTTCCAAGTCTCTGATAAGT TTGGGGCTTGTGAAAAGGTTTATTTATTTATTATTTATAGCTAATTTAAATTTTATTAAGTCTTACAAAATTTATAAATT ATGTTTATGTATTTCATACATGATGTATTTGTTATATGTTATATATATTTGAAAACTTAAGAGTTTAAATTTCTTGGTCT ATTTGAAAACTTTTATGTAATTTGAGACTTTAAGTAGGCTTGGCTATCAGGCAAAACTAGACTTTCGTATTTGCACAAAA GGGCCAGGTTGGTCCCAAATATAAAAAGGCTATGAGAGGAATTATGCTAGGCTATGGCTGGTGTTTAGCAGAACAGGTCC AGCCCTATTGAAGCTAAATTTAGCCTAGCTTATTCTACCTAATAATATGTAAGCATTAGCCGAATCTGCATTTTTTTATG ATTATTTCATAGTTTTATCACATAGCTTCCAAGAGGCTCACAAATATGTAATTGTAACTTGTCTAACTTTTTTTTTATAA GCAATCATGTATATTAAAAACTAGCACAAGGGGTGCTAGAACCCAAAGCAACAATACAAAACAGAAATTCCCAAAGCAAT AGAGATAAACTCCAGTGCACAAGGGAAAACATGAAGGTAACGAGCGAAACAAAGACAGCTAAGAAAACTAAATGCAGCAG CTACCAGACCCAATTTAGTAGATTCAAGAGAATCACTAAAACCCATCATTTCAAGGAGAGGAATCAGCTCCCTCCCTTTA CCCAATCATTGGTCAGATGCCACCAAGACATGCCATTGGATTAGTTAACCATTCAAACATAGATGAGTTAAAAGCCTTGC TTTTCGCGAACAGCCATTTCCATGCTGTCTAACTTACTTCCTCCTCTAGTGCTGTTGTGTAAGTATTTGCTGAATATGTA TTCTGTAGTGTTCTTTTCACATTACACTTAGCTCCAATAAGGCTTTCAAATCTTAAATGCTGACAAGCCTAACATATTTA ATTTATGATCCATTTATGGCCCAACTTGGAAAATCTTTTATGTTGCAGTTTTTCAAGGTTTTATTAATAAGTTCTTATAT GCAGGCACTCCATGGACTGAGGAGGAACACAGAATGTTTTTACTTGGATTGCAGAAACTGGGCAAAGGTGATTGGCGTGG AATTGCAAGGAACTATGTTATTTCAAGGACACCTACTCAAGTGGCCAGTCATGCTCAGAAATATTTCATCAGGCAAAGCA ATGTGTCTAGGAGAAAGAGACGGTCCAGCTTGTTTGATATTGTTGCAGATGATGTTTGTACCCTTATTGGAAATACTATG CGTGAAACATGTGTTTCTTTCACATCAATATGCATATAATGAAATTGACGCATCATAACCTGCTCATTGCCATCAATAAG ATTTTCAAAATGTGTTTCTTTGAATATAATATGACCTGTTTGGCTTCTGTTATGACAAAGTTAATCTCATGCATACATTG GTTGTAATTTGTGAAAATTGTCCATTTCCTTTCTTCTTCACCAGCTCTGACAATTTTGGATATTGACTGCCCCATTCTGC ATTCAGATAATGATTATATAGACCATTTATAAAACCACAGCTCTAGGGTAGTTTGTATTCTTTGAAATCTCCATTATTGG AAATATGTGACTCTTCTTGCTCTTTTACCTTGGAGCATTCTCATTTTTCTGGGTTTCCTGTTTATGTTGATTTTGTAGGC GTCCGACACTCCAATGGTAGAGCAAGACTTCTTGTCAGCTAATCAGCTACAGACTGAAACAGAAGGCAATAACCCTTTGC CTGCTCCTCCTCCCATTGATGAAGAGTGTGAATCCATGGATTCCACAAACTCAATAGATGGAGACTCTGCCCTGTTAAAG CCCGACACTCCAATACCGCCAACCTACCCGGTGTTATATCCTGCATATTATCCTCCATTCTACCCGTATCCTCTGCCTTA TTGGTCTGGATACAGTCCTGCAGAGCCCCCAAAGAAAGAGGAGACACATGAAGTGGTGAAGCCAACTGCGGTGCTTTCCA AAAGCCCAATCAATGTGGATGAACTTGTCGGCATGTCAAAACTGAGTTTGGGAGACTCCATTGGTGACTCTGGCCCCTCC TCTCTGTCTCGAAAACTCGTCGAAGAAGGACCTTCCAGACAATCAGCTTTTCATGCTACTCCAGCATGTGGCAGTTCAAA TATAAATGGCAGTGTCATACATGCAGTTTAA
CDS sequence (LotjaGi4g1v0200500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACCCGGCGATGCTCGCATTGCAGCCATGGTGGCCACAACGCCAGGACCTGCCCCAACCGCGGAGTCAAGCTTTTCGG TGTCCGATTGACTGATGGCTCGATCCGGAAGAGTGCTAGTATGGGTAATCTCACCCACTACACTGGCTCCGGGTCTGGAC CTCTTCTTGGTGGGTCCAATAACCCTGATTCTCCCGGTGAAACCCCTGATCACGCCGCCGCTGCTGACGGTTACGCCTCT GAGGATTTTGTTCCTGGCTCTTCTTCTAGCTCCCGTGAAAGAAAAAAGGGCACTCCATGGACTGAGGAGGAACACAGAAT GTTTTTACTTGGATTGCAGAAACTGGGCAAAGGTGATTGGCGTGGAATTGCAAGGAACTATGTTATTTCAAGGACACCTA CTCAAGTGGCCAGTCATGCTCAGAAATATTTCATCAGGCAAAGCAATGTGTCTAGGAGAAAGAGACGGTCCAGCTTGTTT GATATTGTTGCAGATGATGTTTGTACCCTTATTGGAAATACTATGCGCGTCCGACACTCCAATGGTAGAGCAAGACTTCT TGTCAGCTAA
Protein sequence (LotjaGi4g1v0200500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTRRCSHCSHGGHNARTCPNRGVKLFGVRLTDGSIRKSASMGNLTHYTGSGSGPLLGGSNNPDSPGETPDHAAAADGYAS EDFVPGSSSSSRERKKGTPWTEEEHRMFLLGLQKLGKGDWRGIARNYVISRTPTQVASHAQKYFIRQSNVSRRKRRSSLF DIVADDVCTLIGNTMRVRHSNGRARLLVS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 169 | 169 | 7.2E-109 | – | |
| PANTHER | 1 | 169 | 169 | 7.2E-109 | – | |
| MobiDBLite | 1 | 20 | 20 | - | – | |
| MobiDBLite | 40 | 66 | 27 | - | – | |
| MobiDBLite | 40 | 101 | 62 | - | – | |
| ProSiteProfiles | 92 | 148 | 57 | 20.018 | ||
| SUPERFAMILY | 94 | 149 | 56 | 4.45E-17 | ||
| TIGRFAM | 95 | 147 | 53 | 2.6E-19 | ||
| SMART | 96 | 146 | 51 | 4.3E-11 | ||
| Gene3D | 98 | 150 | 53 | 7.8E-16 | – | |
| CDD | 99 | 144 | 46 | 3.0703E-10 | ||
| Pfam | 99 | 143 | 45 | 5.7E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi4g1v0200500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…