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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0201400 |
| Transcript ID | LotjaGi4g1v0201400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DWNN domain, A CCHC-type zinc finger protein; TAIR: AT5G47430.1 DWNN domain, a CCHC-type zinc finger; Swiss-Prot: sp|B9DFV2|PQT3L_ARATH E3 ubiquitin ligase PQT3-like; TrEMBL-Plants: tr|A0A151SKU9|A0A151SKU9_CAJCA Retinoblastoma-binding protein 6; Found in the gene: LotjaGi4g1v0201400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:46679488..46687805) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAACATTTATGAAAGTGTTTTAACTTTTAACTCACATCACAATAATGGACTGATAGAATCATTTATAAAAAATAAAG AAAAAAAGTTGTGAAAATTATAAAATTACTAAATCCGAAGGCAATCTTGTTAACGGTAAAAAAAAAAGTGAATTATTCAA TTTAGAGGGAGACAGAAAAGAAAGGGCGGTAAAAACCCTTGAAAAATCCGAAACAAAAAAAATCCGCGCAAGTTTTTCAC TGCAGAAAAGATATTTTCACGCGCAAAGAAAAGCGCGTAGATATCACGTCCATTCGTGTAAGCCAAGTAAGCCCATTAAG ATTTTTTTCCGTTATAAAAATCCACGCGTTCTCTCATCTTCATCATTTGTTTCACAATCCTCAAACCTAACCCTAATTTC CCTCTTTCTCAACGCGATTCCAATCGCTCTTACAATCTCTTCGATTATCAATCACCGATCTTCGATTATCAATTTTCACT GTTCTCCAATGCTCTGTTTCGTGAAAGAGGAAGAGATGTTCGCGATTCTCCGTTGAAGAAGAAGAAGATCCATCCTTCCA TCGCCGCCGCCGCCGATCAGAGAAATCGCTTCGGATCCGGATGCACAGTCACCTTCGGATCGGGTTTTATTGCTGAAGGA ACAAAACCCCTTTGTTCCCCGTTCGATTTGCGTTTACTGTTGCTGTTGCTGATTTCAGAGGGCTTTGCTTCGCTGGATTG GGATTCGTCTGATTTGAGGATCCACTCAATCTGATTTGTGATCTGTATTCTCTGGGTCCTGTGCATGTGCGTGCTGTGGT TTTGCTTCGAAGACGAAGATTCGGTTGAAGAAGGATTCGAGAAGTGATCTACTCATCGTTGCTGTGGTGGTGGTTCGATT TGTTTGATCTAAACCCTAGTAATCTGTCTGCAAGTGGAGGGAAAAAAAGAAGAAAAGAAAAAAGATTAGATCTTGGATTT GTTGTACTGTTTGATTTGTTTTTTGAGTTTTTCAATCAATATAGGGCCTTTTGATTGGTTCCTAGTTTTGAATTTCAAAG GCCCTTTTTGATTTTGATTATTATCATCTTGTTCTTGTGTTATACTACTGCTTTGGTGTTAATCTTTTTTCATAGAGAGA AATATACCATGGCGGTGTATTATAAATTTAAGAGTGCAAGAGATTATGATTCAATTCCCATGGACGGTCCTTTCATCTCT GTTGGTACTTTGAAAGAAAAAATATTTGAATCCAAGCATTTAGGAAGAGGAACTGATTTCGACCTTGTGGTCACCAACGC CCAGACCAATGAAGGTTGGTTCTGATTTTTGATTAAACTCTTGTTGTTCAAGTCTTAGAGTTTTAGTTTGGTTCTTAATT AGTAATTTAAAATAGCTTTGAGAGGGTTTTCCTGGATAAAACTTACAGTGTTTGTCTTGTACCTCTTCTCGAAGTACAAA CTTTTACTAGTCGTATCGAGCATTATAACAGGTTTAACTCGAAGGTTTGTCCGCCACTAGATATAATAAAAGGATCAGAC TTAAAAATGAAAAGGAATAGAATATTGTAATACATGTAGTTGGGCTGCAGACTAATTGTGGGAATTGCAGGCGCGAAATT CGTAGTATGGTAATTTTTATGTTAGGCTTCCTGAATAGCATAGTTACAGAGTTTTATAGTTGCTTTGTCTCTTGCAATTT CAGAGTATCTTGATGAAGAAATGTTGATTCCTAAAAATACCTCAGTCTTAATTCGTCGAGTTCCAGGACGGCCACGTTTA CCGATTGTTACTGAGCAAGAGTACTATCTCCAACCTTTAATCTCATTACTCTTGTTGGATTTTTCACTATTGATCATGCA TTGTATTTTAGTTTGTTAAAATGGGCTGTCATCGGTTTGTCATTTCTCTTGTCTATATAAGACGTACTGCGAGAAACTAC ACTGTTCATTTTGTGGAATAGATTCTGTGTTCTTGAGTGGCTGAGCGGCAACTGTATTTTGCTTTTTGCAGACCAAAGGT GGAAAACATGGTGGTGGAAACTGAACCTGAAAACAGTAGCTTACCAGCTTATAATCCAACTGGGATGAATTATGTAAGGC CCTTCTTTCTTTTCATTTTGTTTTTTTATAAACAATACAGATGCATTCCCTTGAAATTGACCACTTTATACCACACTTTG ACAGCCTGAAGATTCAGAATGGGATGAATTTGGCAATGATTTGTATACTATACCTGATCAACTGCCTGTTCAAACAAGCA ACTTAACTCCAGAGGCTCCTCCTCCTACTAACCAAGCTGATGAAGAAAGTAAGATTAAGGCCTTGATTGATACTCCAGCG TTGGATTGGCAACGGTGAGTAGAATGTCTTCCCTGTATTTTTTGGTTTAGGGATTAGCATAGAACTGAATGATAAGAATA ATTAGTAGAGAAGAAAACCGATCAAATGCGAATATCCCTCCTGCAAGAATAATGTGTATTACCATCTCTTCTGAGGAAAT GCGGATTCCTCATCTGTGGTAGACTTGTATTGGAATTGTTGTTACATGCATTTTCCTACCAAACTAATGCTAAGTTTGGA TCTTTAATGGGGGATGTAAAGGAGGGAGATTGGATGGATTGGAATAAGTTGCCATATTTTTGTTTGGATATTTTATAGGG GATTGGAGAAAGGGTCCATTTTATTGTTTATGGAGTGAATGAACTGTTGAGAAACAATGATGACTGATAATGACATTCCA TTATGTTTCCCTCCATTCCATCATAAGGAATCAAATGTGCTTGTCTTTTGGTGTAAAACACTTCCCTTTATGTTTCTCTG ATGTTTTATGTTAATTTTTCTTTTGTGGATGCAGTCAAGGTTCTGACTTTGGCTCTGGTAGAGGTTTTGGAAGGGGAGGT GGACGGATGGGGGGTGGACGTGGTTTTGGTAATTCTCTTTGTCTAATCTATTCATTTGAGCGATTTGCTTCTTTGGATGC AAATATTAATATGTTGATGAATTAATGAATATTTACTTGCTGTGATCTGGCAGGCTTGGAGCGGAAAACACCTCCACAAG GCTATATATGTCACAGATGCAAGGTGGCTGGTACGTTGATGCTTTTGAATGTTTTAATTACCCTCTGCTCGCAATTTTCT GGATAGCGTTGAGTTTTACTTACCTTACTTTTTTCTTTTCATTTTTGTTTAGGACATTTTATTCAGCACTGCCCTACAAA TGGTGATCCAAATTTTGACATCAAACGAGTCAAACAACCTACTGGTATTCCAAGGTCGATGCTGATGGCAAATCCACATG GCTCCTATGTTTTACCAAATGGTTCAGCAGCTGTCTTGAACCCAAATGAGTGAGTACATGTTGGTTCTGCTTGTCCATTC TGTCATGTAGACATGAAATTGAGTTTCATTTTTTTCTTGCAAACAGAGCTGCTTTTGAGAAAGAAATAGAAGGGATGCCA TCAACACGTTCGGTTGGGGATCTACCACCTGAGCTCCACTGCCCCTTGTGTAATAATGTCATGAAAGATGCTGTACTGAC AAGCAAGTGCTGTTTTAAAAGCTTCTGTGACAAATGTATATTTCATCTATCTAAACCTTCGCTAGTTTATTGTTGATTTT CCTTGTTAAGCAAGCTCAGAACATTTTAGATGTTTTAGTGTCTTCTCTACTATATCTTGTCCTTAAACTATTGTATACAG GACTTATATTGAAGTTAATGTAATATCATTGTTGAAATTCTTTTCAGGTATTAGGGACTATATTATCTCCAAATCTGTGT GCGTATGTGGCGCGACAAATGTTCTTGCAGATGATCTTTTACCTAATAAGACGCTAAGAGATGCCATCAATCGCATATTG GAGTCAGGCAATAGCAGTACTGAGAATGCTGGTAGCACGTTTCAAGCTCAAGGTTATTGAAATTATTATGATGTGTCTTA CCTGGACTGTTATTGTTATCAAATTGTCAGTATATATAGTTAAGAACATTTTTAATTCCTTAGTTTGATTTTTCAGATAT GGAGTCTGCTCGCTGTCCACAGCCTAGGCTTCCATCTCCAACCTCATCAGCTGCGTCTAAGGGAGAACTAAAGATTACAC CTGTTAATGAAGAAACGTCAAATATACAGGATATTGCAGATGAGACAAAGGCTGTTTCTGCTCCACAGCAGACATCCGAG CAAGTAAGGATCCCCAGAGTTGCTGATGTATCTGAAGCTACTCATGAGTCAATAAGTGTGAAGGAACCAGCCTCACAAGG GAGTGCTCAGCAAGTTGAGGAAGAAGTGCAGCAAAAGTTGGTTCCTACTGAGGCAGGTAATGTAGGTTGGTGCCATGTAA TTCTACTCTTTTTTGTGGGGTGGTTGTGATTACATGTGTGCTTCTTGAATGTGATTTGGTGAATCTGGAAGATTGCACGG CACCATTGCTTGAACCAGTAAAAATTTATTGTTTGTTTGTTTTCTGTCGAGGACAATCTCATTGGAATTTAATTTTGCAG GGAAGAAAAAGAAAAAGAAGAAAGTCCGTATGCCTACAAATGGTAAATATATCTGTTTCTTTTGTTCTGGTTTGTGTTGT CCTCTGCTGGAACATTTAGTGGACAAGGGCAACAAAAATGTTTTGCCTGTTATAGTTTCAATTAATTTTTATTTGTTTTG CAGATTTGCAGTGGAAAAACCCACATGAGCTTGGAGCGGAGAACTATATGATGCAAATGGGTCCACCCCCTGGCTATAAT CCGTACTGGAATGGCATGCAACCTTGTATGGATGGATTTATGGCACCGTATGCTGGTCCAATGCAAATGTTGGGTTACGG TCAAGACCCATTTGGCATGCCATTTGCAAATGGTTTCCCTCAAGACCCATTTGGCATGCAAGGTTACATGATGCCTGGTT TTCCACCTCATAGGTATGTTATAGTATGATTCTCAATCAAACTTCAGCACTTCTCCTTAAACCTTCTCTCTGTTTCTGTA TCTCTCTCTCACACGCGCGTATGTCTTGTCGGTGCTGAGGGACAGATTTTTAGGTTTGCAGAGTGAACACTAGTGTTGCA TGTTTGTCTAGTTTGATAGTACATTGTTCTTTTTAATGCTAAATTGTAATATAATAATTATGATTGTGTTCAGGGATCTT GCTGACTTCAGCATGGGGATGAATGTTCCACCCCCACCCCCAGTTATGAGTAGAGAGGAGTTTGAAGCTAGAAAAGCTGA TCTGAGGAGGAAGCGTGAAAATGAGAGACGGGGTGAAAGGTACAGTTGGAATGTCTATTGGATGGCTATCACATTAAAGT TTGACTTGTGTTTGATAGGCAGTTTTTATACCACTGTGAAGTAACAATATTTTATCTTGCTTTCATATGCATGATACTTT TTGTATGAAGATTCAACCTCTTGTTTATGTTGAGTATCTTTTGGGTGCTATATAAATGTTTTAGGATATCTTTGCAGAAC ACTGCTCATGTAGCATTTACCCTTCCTTGCCTGGTGAATTTAGTTGCCATGTTTTTAATTGTCAGAGTTATCATGTTGTG AAATGTGAATGGATGACCAATCAATGTTATCTTGGTTCTTGTTGAGTGTAATTATATGTAGTTTTATGGACTTATCTGTG TTTTACTCTTCATAGTTGTTAATTAGTTCACTTCTTTCATGTTACAGGGATTTCTCCAAAGAACGTGAATTTGGTCGGGA AGCAAGCAGTGTTGGGGATGTTTCTTCGATGAAACCAAAAACTGTATGTGCTTTTTATTATTGTCTTCATTTTCCTCCCT CTATAAGTGGACATTTATGTGCCATCATCTACTTTTTTGGGTTTTTCTACCAGAAGTTTTACCAGAAACCTCAAGCTCAA GCTTGCCAGAGAACACTGATTGCACTAGATAAACCCACTTATTATTTTTGTTTCTTTAATTATAGTAGGCTTCGGCATTT AATTTTTTTGGCTTTGTTTATTAATAAAAACAATTGTTTATCGAGTGATACTCTGGTTGATCATGAAGTGGTCTATAGGG AGCAATGCCCACTTGTCTTACCATCATTTTGTGGTCAAGAGTATCAAATTTTGTTTAATGTGGGTGAAAATAAAATGATA GCGAAATAGTGCTGGACATGATTATGGTGCAGTGCTGTTATTGAATTTTCATGCTCCCGGTTTCACAGCCTCCCTCGTGA TCAACTATTCCGACTGGTTTTGGACATGGTTTGAATCATAAAACAGATTCAAATCATATATTCACCTTAGCTTATTTGAA GTGTTTTGGATTTGTACTTTAATTGAGTGAACTTTCAAGTTCATATTGATATCCATTATCATGGTAGGTTTTCTGCATAT CTAGCTTTCCTGTTGGTAATTGATGCACTGATGAGGGTGGGATGTATTGGGGCATCAAGTTTAAGATTCCTAAATTTTGG ACGTTTTGATTTTGAATTTAGAAGTTATCTAGTATGTGGGTATACTACTAATAACTATATCTGGAATGTGGGTCTCCAAA ATCTTTTCATATTCAAAGGGCAGCTAAAAGGATCTTGTGCCATCTTTATATTCTGGCAACTTCTCTCTGTAATAGCAGCT AGTGCAGGGTACCTTATTGCCCTTGGCTTGGACTCTGCTAGTCCCTCCAATTTTTATTTTTTTTAGTGTGTAGAAATGTG CGTCATTCTTGTTACATATTATGAATTCACCTTTTGATGGGTGAAGATTGTTATCCACTATTATATGGTAGAATGTTGCC TTTTTGAAGAAAAAATAAACTATTAAGTAAAAAATCTTAGCTATAATATTCTGAAAACTTTTTTTTTTGTCAAGAACTGT TTGATTCTTCAGCTTGACAAATTTGACTATAGGCTGGCTGCCCGTGGTCTTGGGCTTTGGGCTGTTCGCCCAAAAAAGTC CAAACGAGTACTAGTTAAATTTTTTGAATAAAAAATATTTTAAAGACAAAAAAAAAAGGAATTACAAATACTCAGCAATC TAACTCACAAGGCAAATCAAATCTAATCTTTAGTATTTTGTTTGGTTGCGTCTATGATTTTTGTCAAGTTATTTTAAATA TTTTGTAGTGAATTACTCGATCTTTTGGAACCTAAAAAGGAAAAAACCTGAAAAAATGTTAAGAAACAAACTGATTTGTA ACAAAGAAAAACGTTAGTACTACTATCAACTATTATTTTTGTAATAATTTATACATTTGAACTAGCATTTTGTTAAAAAA CATTCACCATTACGAATCCTCTAGTAAATTTAAAGTAGCCTTATTGATTAGATTGCACTTTACAATATAGATATAGATAG CTGATACAGTAGCTGTACCTAATGTAGATGTAGAAATTTGCCACGTGTTTTGGATTTGATGTATTCTTTTTATTTCTTTT GTTTAATGTTTTAAATTTTAAATTTATTTATTTTAATGAGTCAAATATATTTAACCCGTGGCCCTAACCGTTTCTATTTT GGTGCAGCAGAAGCCATTTCCACCGCCGCCAAGCAGCGATTACCACCACCACCGCCACCGTTCGGAACGGCCGTCGCCAG ATCGCGAGGTGGAACCTCCACGCCCAGCCAAAAGAAAATCTGAGCACATCTCCGATCGTCAACGCGATGACAAGGATCGG GATCGCGACCATGAGCGGCACCACCACCGCCATCCCCGACCTGAGTCCTCCTCATCCAGAAGGTCATCCGAGCCAGTGAC CAAATCCTCATCGAACTCGGCGGCAGCAGCGGCGGCCGCCGCAGATCAGAAGCACAAGGCTAGCGTGTTCTCCCGCATAA GCTTCCCTGCTGAGGAAGAAGCCGCGAAGAAGAGAAAGGTTACCGCTCCTTCCCCAACGGAATCTTCAGCTGTTGGCTCC ACCGCTGCCAGTGCATCGGCGAACGGTTATTATCAAGGGAGGAAGAGCAGTAAGGTGGTTCCGGATTATGAATCTAGCGA CGATGAGCGGCATTTCAAACGGCGGCCGTCGAGGTACGAGCCGTCTCCTCCGCCGCCGGCCGCCGATTGGGAGGAGGAAG GAGGAAGACATTCGAGAGGATCGAGGGAACGCAAGCATAGATAATCGTGCTGTGCTGAGATCAAAGGTGATTGGATTGCT CTGTGTGATCATCACCGACAATGGTTGAGTCAACTCAACTCTGCTACAATGCTTGGAAATTGAAATAATCTTTGGAAGAA TTTTTCAGTGTAACTTGTTCTGATTGATTTTTCAATAATTTTCGCACTTGTAAAATTATGACTCTTTTTATTCAGATCCA ATGAATCTGTTTATGTTTTGCTTCGAATTTACTCGTTGCAATTTTCGAATTATCCAATTTTCTTGGCTCTTGTTTCAA
CDS sequence (LotjaGi4g1v0201400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGTGTATTATAAATTTAAGAGTGCAAGAGATTATGATTCAATTCCCATGGACGGTCCTTTCATCTCTGTTGGTAC TTTGAAAGAAAAAATATTTGAATCCAAGCATTTAGGAAGAGGAACTGATTTCGACCTTGTGGTCACCAACGCCCAGACCA ATGAAGAGTATCTTGATGAAGAAATGTTGATTCCTAAAAATACCTCAGTCTTAATTCGTCGAGTTCCAGGACGGCCACGT TTACCGATTGTTACTGAGCAAGAACCAAAGGTGGAAAACATGGTGGTGGAAACTGAACCTGAAAACAGTAGCTTACCAGC TTATAATCCAACTGGGATGAATTATCCTGAAGATTCAGAATGGGATGAATTTGGCAATGATTTGTATACTATACCTGATC AACTGCCTGTTCAAACAAGCAACTTAACTCCAGAGGCTCCTCCTCCTACTAACCAAGCTGATGAAGAAAGTAAGATTAAG GCCTTGATTGATACTCCAGCGTTGGATTGGCAACGTCAAGGTTCTGACTTTGGCTCTGGTAGAGGTTTTGGAAGGGGAGG TGGACGGATGGGGGGTGGACGTGGTTTTGGCTTGGAGCGGAAAACACCTCCACAAGGCTATATATGTCACAGATGCAAGG TGGCTGGACATTTTATTCAGCACTGCCCTACAAATGGTGATCCAAATTTTGACATCAAACGAGTCAAACAACCTACTGGT ATTCCAAGGTCGATGCTGATGGCAAATCCACATGGCTCCTATGTTTTACCAAATGGTTCAGCAGCTGTCTTGAACCCAAA TGAAGCTGCTTTTGAGAAAGAAATAGAAGGGATGCCATCAACACGTTCGGTTGGGGATCTACCACCTGAGCTCCACTGCC CCTTGTGTAATAATGTCATGAAAGATGCTGTACTGACAAGCAAGTGCTGTTTTAAAAGCTTCTGTGACAAATGTATTAGG GACTATATTATCTCCAAATCTGTGTGCGTATGTGGCGCGACAAATGTTCTTGCAGATGATCTTTTACCTAATAAGACGCT AAGAGATGCCATCAATCGCATATTGGAGTCAGGCAATAGCAGTACTGAGAATGCTGGTAGCACGTTTCAAGCTCAAGATA TGGAGTCTGCTCGCTGTCCACAGCCTAGGCTTCCATCTCCAACCTCATCAGCTGCGTCTAAGGGAGAACTAAAGATTACA CCTGTTAATGAAGAAACGTCAAATATACAGGATATTGCAGATGAGACAAAGGCTGTTTCTGCTCCACAGCAGACATCCGA GCAAGTAAGGATCCCCAGAGTTGCTGATGTATCTGAAGCTACTCATGAGTCAATAAGTGTGAAGGAACCAGCCTCACAAG GGAGTGCTCAGCAAGTTGAGGAAGAAGTGCAGCAAAAGTTGGTTCCTACTGAGGCAGGGAAGAAAAAGAAAAAGAAGAAA GTCCGTATGCCTACAAATGATTTGCAGTGGAAAAACCCACATGAGCTTGGAGCGGAGAACTATATGATGCAAATGGGTCC ACCCCCTGGCTATAATCCGTACTGGAATGGCATGCAACCTTGTATGGATGGATTTATGGCACCGTATGCTGGTCCAATGC AAATGTTGGGTTACGGTCAAGACCCATTTGGCATGCCATTTGCAAATGGTTTCCCTCAAGACCCATTTGGCATGCAAGGT TACATGATGCCTGGTTTTCCACCTCATAGGGATCTTGCTGACTTCAGCATGGGGATGAATGTTCCACCCCCACCCCCAGT TATGAGTAGAGAGGAGTTTGAAGCTAGAAAAGCTGATCTGAGGAGGAAGCGTGAAAATGAGAGACGGGGTGAAAGGGATT TCTCCAAAGAACGTGAATTTGGTCGGGAAGCAAGCAGTGTTGGGGATGTTTCTTCGATGAAACCAAAAACTAAGCCATTT CCACCGCCGCCAAGCAGCGATTACCACCACCACCGCCACCGTTCGGAACGGCCGTCGCCAGATCGCGAGGTGGAACCTCC ACGCCCAGCCAAAAGAAAATCTGAGCACATCTCCGATCGTCAACGCGATGACAAGGATCGGGATCGCGACCATGAGCGGC ACCACCACCGCCATCCCCGACCTGAGTCCTCCTCATCCAGAAGGTCATCCGAGCCAGTGACCAAATCCTCATCGAACTCG GCGGCAGCAGCGGCGGCCGCCGCAGATCAGAAGCACAAGGCTAGCGTGTTCTCCCGCATAAGCTTCCCTGCTGAGGAAGA AGCCGCGAAGAAGAGAAAGGTTACCGCTCCTTCCCCAACGGAATCTTCAGCTGTTGGCTCCACCGCTGCCAGTGCATCGG CGAACGGTTATTATCAAGGGAGGAAGAGCAGTAAGGTGGTTCCGGATTATGAATCTAGCGACGATGAGCGGCATTTCAAA CGGCGGCCGTCGAGGTACGAGCCGTCTCCTCCGCCGCCGGCCGCCGATTGGGAGGAGGAAGGAGGAAGACATTCGAGAGG ATCGAGGGAACGCAAGCATAGATAA
Protein sequence (LotjaGi4g1v0201400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVYYKFKSARDYDSIPMDGPFISVGTLKEKIFESKHLGRGTDFDLVVTNAQTNEEYLDEEMLIPKNTSVLIRRVPGRPR LPIVTEQEPKVENMVVETEPENSSLPAYNPTGMNYPEDSEWDEFGNDLYTIPDQLPVQTSNLTPEAPPPTNQADEESKIK ALIDTPALDWQRQGSDFGSGRGFGRGGGRMGGGRGFGLERKTPPQGYICHRCKVAGHFIQHCPTNGDPNFDIKRVKQPTG IPRSMLMANPHGSYVLPNGSAAVLNPNEAAFEKEIEGMPSTRSVGDLPPELHCPLCNNVMKDAVLTSKCCFKSFCDKCIR DYIISKSVCVCGATNVLADDLLPNKTLRDAINRILESGNSSTENAGSTFQAQDMESARCPQPRLPSPTSSAASKGELKIT PVNEETSNIQDIADETKAVSAPQQTSEQVRIPRVADVSEATHESISVKEPASQGSAQQVEEEVQQKLVPTEAGKKKKKKK VRMPTNDLQWKNPHELGAENYMMQMGPPPGYNPYWNGMQPCMDGFMAPYAGPMQMLGYGQDPFGMPFANGFPQDPFGMQG YMMPGFPPHRDLADFSMGMNVPPPPPVMSREEFEARKADLRRKRENERRGERDFSKEREFGREASSVGDVSSMKPKTKPF PPPPSSDYHHHRHRSERPSPDREVEPPRPAKRKSEHISDRQRDDKDRDRDHERHHHRHPRPESSSSRRSSEPVTKSSSNS AAAAAAAADQKHKASVFSRISFPAEEEAAKKRKVTAPSPTESSAVGSTAASASANGYYQGRKSSKVVPDYESSDDERHFK RRPSRYEPSPPPPAADWEEEGGRHSRGSRERKHR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 831 | 831 | 1.3E-267 | ||
| PANTHER | 1 | 831 | 831 | 1.3E-267 | – | |
| Gene3D | 1 | 79 | 79 | 3.8E-33 | – | |
| SMART | 3 | 76 | 74 | 1.6E-42 | ||
| Pfam | 3 | 76 | 74 | 1.4E-31 | ||
| ProSiteProfiles | 3 | 76 | 74 | 32.114 | ||
| MobiDBLite | 171 | 195 | 25 | - | – | |
| Gene3D | 201 | 250 | 50 | 1.2E-16 | – | |
| Pfam | 204 | 224 | 21 | 3.1E-9 | ||
| Gene3D | 270 | 372 | 103 | 3.3E-13 | ||
| SUPERFAMILY | 282 | 356 | 75 | 1.2E-12 | – | |
| CDD | 288 | 331 | 44 | 9.78246E-17 | – | |
| MobiDBLite | 358 | 408 | 51 | - | – | |
| MobiDBLite | 358 | 375 | 18 | - | – | |
| MobiDBLite | 382 | 408 | 27 | - | – | |
| MobiDBLite | 437 | 484 | 48 | - | – | |
| MobiDBLite | 445 | 464 | 20 | - | – | |
| MobiDBLite | 578 | 834 | 257 | - | – | |
| Coils | 590 | 610 | 21 | - | – | |
| MobiDBLite | 590 | 624 | 35 | - | – | |
| MobiDBLite | 645 | 705 | 61 | - | – | |
| MobiDBLite | 706 | 724 | 19 | - | – | |
| MobiDBLite | 756 | 780 | 25 | - | – | |
| MobiDBLite | 787 | 805 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | MRNA processing | Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. | ||
| Biological process | Protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. | ||
| Molecular function | Ubiquitin protein ligase activity | Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues. |
Expression pattern of LotjaGi4g1v0201400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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