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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0207200 |
| Transcript ID | LotjaGi4g1v0207200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 14 kDa proline-rich protein DC2.15; TAIR: AT4G12490.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; Swiss-Prot: sp|Q9SU34|ERLL2_ARATH pEARLI1-like lipid transfer protein 2; TrEMBL-Plants: tr|A0A0D2ZWF0|A0A0D2ZWF0_BRAOL Uncharacterized protein; Found in the gene: LotjaGi4g1v0207200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:48042954..48043972) extracted from Lotus japonicus Gifu genome v1.2.
CAACATTATAACCCCTCTCACCAACTAACTAGCATGTAAAAGTTTGCCTTATATAAACCCCCTACTCACTCCAAATCCCA ATCCCATCTTCACATACACCCCCTCCAAGCTCTATGCCAGTTTACTAGTGTTTGCGCGCGTGCATGTCTACTTGAGGAAA AATACAAACACTAGCTCCTACTAGAGTTCAAGATGTCTTCCAAAACCAGTCCCTCCGCCATCGCTCTTTTCCTCACCCTC AACATCCTCTTCTTCACACTCACCTCTGCATGCGGCACTCACAAATGCCGTGGCCCAAGCCCACCCCCAAAGCCAAAGCC AAGCCCATGCCCTTCCCCTCCAGGTGGCTCCAGCACTCCACCAGGAGGCTCTAGCCCTTCCGCTGGCTCTAGCTCTTCAA ACGCGACGTGCCCCACTGACGCGCTCAAACTTGGTGTTTGCGCCAACGTTCTGAGCGGGTTGCTGAACGTGACATTGGGT CAAGTACCAGCGACACCATGCTGCTCCGTTATCCAAGGGCTAGCTGACCTTGAAGCTGCAGTTTGCCTCTGCACTGCCCT AAAAGCTAGCATTTTGGGTGTCAGTCTCAATATTCCTATCTCACTCAGCTTGCTCCTCAATGTTTGCTCAAAGGAAGTCC CCAGCGGTTACCAATGTGCCTGATCAAACCGTTACCTACTTTCCCGTCGCGTTTACTAGTTGTGGCTTCTTTTAGTTCCA TTGATCAGTGTGTGACAATAAAGAAATTCCCGATGTTTTATTACATATGTAAACCGCAAGGGAATTAACCAAATTATGAT GATGAACTTGTGCTATTTATTTTACTAAGAAATTATTGAAAATCCGGGTTGATTTTTATTTCTGCGATTTCCTTTTGTCT TTTATTACTTGGTTGTTCTAACGACTTTCATCCACTGTCCAAAACACTATTATATAATATGGAAAACGAAATAGAAAGGA AAGTAAACATAGGCAACATGTAAACACTGTAAAACTGCAAAGAGTACCCGTGAACGAAC
CDS sequence (LotjaGi4g1v0207200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTCCAAAACCAGTCCCTCCGCCATCGCTCTTTTCCTCACCCTCAACATCCTCTTCTTCACACTCACCTCTGCATG CGGCACTCACAAATGCCGTGGCCCAAGCCCACCCCCAAAGCCAAAGCCAAGCCCATGCCCTTCCCCTCCAGGTGGCTCCA GCACTCCACCAGGAGGCTCTAGCCCTTCCGCTGGCTCTAGCTCTTCAAACGCGACGTGCCCCACTGACGCGCTCAAACTT GGTGTTTGCGCCAACGTTCTGAGCGGGTTGCTGAACGTGACATTGGGTCAAGTACCAGCGACACCATGCTGCTCCGTTAT CCAAGGGCTAGCTGACCTTGAAGCTGCAGTTTGCCTCTGCACTGCCCTAAAAGCTAGCATTTTGGGTGTCAGTCTCAATA TTCCTATCTCACTCAGCTTGCTCCTCAATGTTTGCTCAAAGGAAGTCCCCAGCGGTTACCAATGTGCCTGA
Protein sequence (LotjaGi4g1v0207200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSKTSPSAIALFLTLNILFFTLTSACGTHKCRGPSPPPKPKPSPCPSPPGGSSTPPGGSSPSAGSSSSNATCPTDALKL GVCANVLSGLLNVTLGQVPATPCCSVIQGLADLEAAVCLCTALKASILGVSLNIPISLSLLLNVCSKEVPSGYQCA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 9 | 9 | - | – | |
| ProSiteProfiles | 1 | 27 | 27 | 5.0 | – | |
| Phobius | 1 | 26 | 26 | - | – | |
| SignalP_EUK | 1 | 26 | 26 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 26 | 26 | - | – | |
| PANTHER | 4 | 156 | 153 | 3.9E-53 | – | |
| PANTHER | 4 | 156 | 153 | 3.9E-53 | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 10 | 21 | 12 | - | – | |
| Phobius | 22 | 26 | 5 | - | – | |
| Phobius | 27 | 156 | 130 | - | – | |
| MobiDBLite | 31 | 72 | 42 | - | – | |
| MobiDBLite | 34 | 56 | 23 | - | – | |
| MobiDBLite | 57 | 72 | 16 | - | – | |
| Gene3D | 68 | 156 | 89 | 3.8E-28 | – | |
| CDD | 70 | 155 | 86 | 3.10819E-28 | ||
| Pfam | 72 | 156 | 85 | 9.4E-27 | ||
| SMART | 73 | 155 | 83 | 1.8E-7 | ||
| SUPERFAMILY | 76 | 155 | 80 | 1.06E-23 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0207200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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