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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0207600 |
| Transcript ID | LotjaGi4g1v0207600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 14 kDa proline-rich protein DC2.15; TAIR: AT4G12490.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; Swiss-Prot: sp|Q9SU34|ERLL2_ARATH pEARLI1-like lipid transfer protein 2; TrEMBL-Plants: tr|I3SMD3|I3SMD3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0207600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:48105346..48105774) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCCTCCAAAACTTGTTCCTCCCTTGCTGTTTTCCTCACACTCAACCTCATCTTCTTTTCACTAGTCTCTGCTTGTAA TAGTGGATGCCCTGGTCCAAACCCAAAGCCCAAGCCCAGCCCAAGCCCAAAGCCAAAGCCAAACCCCAACCCTAGCCCAT CTTCAGGTGGTTCATGCCCCCGTGACGCTCTCAAACTAGGCGTGTGTGCCAATGTGCTAAATGGGTTGTTGAACGTGACA TTGGGTCAACCACCAGTGACACCGTGCTGCACCCTCCTCGACGGTCTTGTTGATCTTGAAGCTGCTGTCTGCCTCTGCAC TGCCCTAAAAGCTAACATTTTGGGCATCAACCTCAACCTTCCCATCTCACTCAGCTTGCTCCTCAACGTTTGCTCAAAGA AAGTCCCACGTGACTTCCAATGCGCCTAA
CDS sequence (LotjaGi4g1v0207600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCTCCAAAACTTGTTCCTCCCTTGCTGTTTTCCTCACACTCAACCTCATCTTCTTTTCACTAGTCTCTGCTTGTAA TAGTGGATGCCCTGGTCCAAACCCAAAGCCCAAGCCCAGCCCAAGCCCAAAGCCAAAGCCAAACCCCAACCCTAGCCCAT CTTCAGGTGGTTCATGCCCCCGTGACGCTCTCAAACTAGGCGTGTGTGCCAATGTGCTAAATGGGTTGTTGAACGTGACA TTGGGTCAACCACCAGTGACACCGTGCTGCACCCTCCTCGACGGTCTTGTTGATCTTGAAGCTGCTGTCTGCCTCTGCAC TGCCCTAAAAGCTAACATTTTGGGCATCAACCTCAACCTTCCCATCTCACTCAGCTTGCTCCTCAACGTTTGCTCAAAGA AAGTCCCACGTGACTTCCAATGCGCCTAA
Protein sequence (LotjaGi4g1v0207600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASKTCSSLAVFLTLNLIFFSLVSACNSGCPGPNPKPKPSPSPKPKPNPNPSPSSGGSCPRDALKLGVCANVLNGLLNVT LGQPPVTPCCTLLDGLVDLEAAVCLCTALKANILGINLNLPISLSLLLNVCSKKVPRDFQCA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_NEGATIVE | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 8 | 8 | - | – | |
| SignalP_EUK | 1 | 25 | 25 | - | – | |
| ProSiteProfiles | 1 | 26 | 26 | 5.0 | – | |
| SignalP_GRAM_POSITIVE | 1 | 25 | 25 | - | – | |
| PANTHER | 6 | 141 | 136 | 1.3E-60 | – | |
| PANTHER | 6 | 141 | 136 | 1.3E-60 | – | |
| Phobius | 9 | 20 | 12 | - | – | |
| Phobius | 21 | 25 | 5 | - | – | |
| Phobius | 26 | 142 | 117 | - | – | |
| MobiDBLite | 33 | 59 | 27 | - | – | |
| MobiDBLite | 33 | 54 | 22 | - | – | |
| Gene3D | 55 | 142 | 88 | 8.9E-29 | – | |
| SMART | 59 | 141 | 83 | 1.9E-7 | ||
| CDD | 59 | 141 | 83 | 1.54333E-27 | ||
| Pfam | 59 | 142 | 84 | 6.2E-26 | ||
| SUPERFAMILY | 61 | 141 | 81 | 3.59E-25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0207600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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