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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0207900 |
| Transcript ID | LotjaGi4g1v0207900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 14 kDa proline-rich protein DC2.15; TAIR: AT4G12510.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; Swiss-Prot: sp|Q9SU34|ERLL2_ARATH pEARLI1-like lipid transfer protein 2; TrEMBL-Plants: tr|I3SMD3|I3SMD3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0207900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:48153889..48154911) extracted from Lotus japonicus Gifu genome v1.2.
TCCACACCAAATAATATCCATCCTCTCAAACACACTCTTCTACTAAGCTCTAGTAGTTAACTTGCTAGAAGCACATATTC GAAGAGTTTAAGAGATAATGGCTTCCAAAACTTGTTCCTCCTTAGCTCTTTTTCTCACACTCAACCTCATCTTCTTTTCA CTTGTCTCCGCTTGTAATTATGGGTGCCCCGGTTCAAACTCAAACCCAAGGCCCAGGCCTAGCCCTAGGCCCGCAAACCC CAACCCTAATCCTTCAAGTGGCTCGTGCCCACGTGACGCGCTCAAACTAGGCGTGTGTGCCAATGTGCTGAACGGGTTGT TAAATGTGACATTGGGTGAGCCACCGGTGAAACCATGCTGCACCCTCCTAAATGGCCTTGTTGATCTTGAGGCTGCAGTG TGCCTCTGCACCGCCTTGAAAGCTAATATTTTGGGCATCAACCTCAACCTACCCATCTCACTCAGCTTGCTTCTCAATGT TTGCTCAAAGCAAGTCCCTCGTGACTTCCAATGTGCCTGATTATCGCCTATACATGACAAATTATCTTGATCTACTTTTG CTTCGTGTTTGTGACTTTCTAATATTGCTCTTTCTTATTCCATCCATTTACCACTTTGAGATTCTTGTACGTGCATGATG ATTAACATCTTGTTATTCCTTTGATTCAGTGTTTATTTTATGTGGTCATAGTATCACAATAAGGAAAGTATATGTGTTTT GCATTGCCTATGCAAATGGCAAGTGAACCAAAATGATGTACTAGTGTTAATTATTTATTTCATTGAGAAATGAAATTGGT TTAGTGTCAGTAATTCCGTACTACTTTATTTCAGCTGATCTACTTAGCCCGATCTAACTTCCTTTCATATTGCCCAACAA GAGAAAAACAAATTATTTAGGAATGCAAATTTATTTTGCTTTAAAAATGAGATCATACTTTCCTAAATACAAAAATGTGA AGGCAAGAATTTTAACCTAAAGTATAGTATAATGCAAATAATTAACATACATATAATAAATCC
CDS sequence (LotjaGi4g1v0207900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCCAAAACTTGTTCCTCCTTAGCTCTTTTTCTCACACTCAACCTCATCTTCTTTTCACTTGTCTCCGCTTGTAA TTATGGGTGCCCCGGTTCAAACTCAAACCCAAGGCCCAGGCCTAGCCCTAGGCCCGCAAACCCCAACCCTAATCCTTCAA GTGGCTCGTGCCCACGTGACGCGCTCAAACTAGGCGTGTGTGCCAATGTGCTGAACGGGTTGTTAAATGTGACATTGGGT GAGCCACCGGTGAAACCATGCTGCACCCTCCTAAATGGCCTTGTTGATCTTGAGGCTGCAGTGTGCCTCTGCACCGCCTT GAAAGCTAATATTTTGGGCATCAACCTCAACCTACCCATCTCACTCAGCTTGCTTCTCAATGTTTGCTCAAAGCAAGTCC CTCGTGACTTCCAATGTGCCTGA
Protein sequence (LotjaGi4g1v0207900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASKTCSSLALFLTLNLIFFSLVSACNYGCPGSNSNPRPRPSPRPANPNPNPSSGSCPRDALKLGVCANVLNGLLNVTLG EPPVKPCCTLLNGLVDLEAAVCLCTALKANILGINLNLPISLSLLLNVCSKQVPRDFQCA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 8 | 8 | - | – | |
| SignalP_EUK | 1 | 25 | 25 | - | – | |
| ProSiteProfiles | 1 | 26 | 26 | 5.0 | – | |
| SignalP_GRAM_NEGATIVE | 1 | 25 | 25 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 25 | 25 | - | – | |
| PANTHER | 6 | 139 | 134 | 3.8E-59 | – | |
| PANTHER | 6 | 139 | 134 | 3.8E-59 | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 9 | 20 | 12 | - | – | |
| Phobius | 21 | 25 | 5 | - | – | |
| Phobius | 26 | 140 | 115 | - | – | |
| MobiDBLite | 34 | 56 | 23 | - | – | |
| MobiDBLite | 36 | 52 | 17 | - | – | |
| Gene3D | 53 | 140 | 88 | 9.9E-29 | – | |
| CDD | 55 | 139 | 85 | 3.27332E-28 | ||
| SMART | 57 | 139 | 83 | 4.8E-8 | ||
| Pfam | 57 | 140 | 84 | 4.0E-26 | ||
| SUPERFAMILY | 59 | 139 | 81 | 3.97E-25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0207900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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