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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0212400 |
| Transcript ID | LotjaGi4g1v0212400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cornichon family protein; TAIR: AT1G12390.1 Cornichon family protein; Swiss-Prot: sp|Q84W04|CNIH4_ARATH Protein cornichon homolog 4; TrEMBL-Plants: tr|I3T8Z8|I3T8Z8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0212400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:49451326..49455513) extracted from Lotus japonicus Gifu genome v1.2.
TTCTTCAGCGATCCCTTTCGTTACTGAATCTTCCTAATCCTACTACGCTTGTTAACTCTCTCTGGAACAAGATTCTTAGC TTCTCCGAGTACCTTCGGAATCCCCAAGGTTTCTTCTTCACCTTGTACTCCTCTCTGTTCCGTACGTAGCCATTATCGTA CGCAACTCGCATCGTATGGTACGAATGCGCATTGTGTAATTGTACTGGAACTGAAATAGACTGAAATTCAAGATCACAGA AGGAGTATGGCTGATATCTTTGCGTGGCTCTTCTCCTTCTTCGTCCTTATTGGCTTAATTGTTCTCAACGTTTACCAGGT TAATCCCAAAACCCTTTACCTTATGCTTATTGCTTCTTCTTCTGCTTCCCCTTGTTAAAGTCAATTTAATAGCAATTTAA GGCACCCCATTATCGAAAGTTTTGCTCTTTAGTTCAAACATTCAACTGGGTATATGTATATCCAATAATGAAAATTTGGA TGTGAATTTCCACTTGTAAGGGTTTAAGGGAGTCTTCAGTGTGAAGGGGTTACATTTGAGTATTTTCTGAGAGTATGTAC TTTCGTGGATAGAATGCATGTATCACACTCTTTGTGATTGACACCTATATAATTTAGTAACCATAAACTTCAATCATATT TCACCATCTTACTTTTGTCTTTTTAAATTCTGATTCAATTATGATGTGGTAAGAACAAGATTGTGAAATATGATTGAATG TATGTGTAAAAAAAATTACACTGTCGATGTATTGTTATTAAACTCAAAGCAATAAACATACTAGGCACTTTGTATAGAAA ACTTGAAAGTTCTTAGATTGGATGAATAGAATCATTATTAAGTTGCATTGCATATGAGGTTTTTCGGGATTTTGTAAAGT GGTCTATCTACTGAAATGACCTAATTTCTTATGCTTTTGTGTTCTCATATGTTCCATGTTGATCTATATCGTATTCTAGG AGTTAGGATAGGAGTCTCATTTGTCCCTATGTCCAGGTTTTGTTACTTATCTCATTCAGCTTCAGAGCCTTCTGAAGAAG GTTAAGTTTTATTTGTAATGCCTCTAAATGTGCTTGTGTGCTTGTAATTCTCTGACTGTGCTTAACATTTGTTGCAGTTA ATGTGTCTGGCAGACCTTGAATTTGATTACATAAATCCTTATGATTCCGCATCTCGAATAAACAAAGTGGTTTTGCCTGA GTATATTACAGTAGGTGTCCTGCTCTGCTTCTACGTTGTAACAGGGCATTGGATAATGTCACTGTTCTGCCTTCCTTACC TCTACTACAATGTGAGATTGTAAGTTTTCTGCCAAATCTACAAATAAGCTGTGCGAGTTTATTATTTATGAATGACAACT GATTGATGAATATTCTGTTTTCAAGAGACATTAAGTGAAAATGTAACTAGTTGATGGATGTCAGGTTGAGTTAGAGTTAG GATCTTTGCATTCTTCAGCATCTTGCTAGTGTGATTTCCTCTTAAAATGCAACTAGTTGATGGCACATGAGATAAGCCAA TTTGATAGCAATGATGTACATTATGGTTTATGCTTCAAAAAGTTGCTAAGCAGGCTACACTTTTACTACTGATAATTACT TGCTTTTCAAAAAAAAAAATGCTTTTCAAAAAAAACTACTGATAATTACTTAATATTCTGTTTCTTAGAAACCTCTTTAA GAGGTACTATTCATGTCTCTGCAGTAGTTGGTTGTTGACTCCGGTTTGATTTTGAATTTGGGTCTTTGCATTCTGAATTC TAATTTGAGTTTAGGAATTATATGGTCATGGTGTATGAGTAAAAGACCAAATGCTAGAGTAAGAAGATTTGATGCCTGAA TCGGTAAATAGAGTTATTGCCGCAGCAACTCTAGAGTAAGAAGGGCAAAAAGCACACACGCTTTAAGTAGTAGTAGGCGT ATCCGTGCTGGATTATATTCATACTAGACACTTTCATAGATACTTAGGATACTGCCATAGTAGTCAATCCCGGATAGCGG CGCGTAGCGGCCGGCCCCAAAAGTGGGATAGCGTGATAGCGCATAGCGGGATGGCCGCTATTCTGAATTTTTTTATGTAA TTTTATATCATTAATAGTTTAATACTATATACATATAAATAGCAAACAATGTCAAATATTGCCTAAAATTCATAACATTC ATAATAGAAATAAAAATCATAAGTCTTGAACAATAACACACAACTAATAACTTCTCAAAAGCAAGGTAAAGAAGTCGAAT TTGCAAATCTGAATGAAGAATGAAGCTTAATTCTTTCAATTTTGACCTATAATGGCCCTGAGAAGTCCTAACATGCCCAT AAAAAGGTTCCCCAACGATTTAAAACAAAGAGGCTTGAGTCATTTTCTCCTTCGTTCATATAGCGCCGCTATTTCCCGCT ATTGGCCGCGATCTGCCGCTATTTTGGCCGCTATTCGCGCCGCTACGACCGCTATTGTGAAGTTGGCCGCTATTTCATCT CAATAGCGGCAGGGAGCCGCTCCGCTCCGCTACGCCGCTATAGCGCCGCTATTTGCCGCTATTGACTACTATGGATACTG CTAGTTACATTTTATAATTTTGTTAACCTTTTTTTACCAATTCAGATAGGAATGCTACAATTTTTAGATTAATTATAACA TTTTATTATGTTTCCAGGGACTCATACTCAAGTTCAAAACATTGATTCCCTCTTTAGATTTAATATTTGTATTTAATGTT AATATTAATTTTATACACTGTATCATAGTCGTATCAAATCTCAATTTTTAGAATTTGTCCTATTCTTATACCTGCGTGTG TTTTCTAGCTTGATGCATAGTTTCGCACCTTGGGGGGGTGCGCGCAGGAGATGCCTATTAAATGAAAGTATATGAACATT TCTATCAATATAATAGGTTCCCTCACATAAGAGTCATCTAGGCTTAAAGTGTGGACATGGATAGGCCCATCGAACCTAAT GTTGAACTTGAGCTTTTATTTAGAAGAATGGGGGTATTGAAGATCAAATCTAGACCATTTGATCATAGAAACTCTTATAC CATGTCATGAGCTAACTATCTCTAAAGTTTTAGCTGTTAAATGAAAACACATAAATGGTTCTCATACCTAGCATTCAGTA CTATTAGTTTCTCGTCAACATCATCAATTATAGATTTTGCATATAGTCACACGTATCATTCGATATCTATATCAATATCT GTATGGGTGACATAGCTGCCATATTATTTGGTATTTGGTTTCTTATAGTTAGGGGATAACAGAGGGTTTTGCGTGCTTTA ATCATCCTTGAAAGCTTAATATAATGGAACATGCTCCTTATGGTCTTGCTGATTGCATATTTTTGTCACTTTGATCAGGT ACAGACAGGGAAAACATCTAGTTGATGTTACAGAGATTTTCAACTTGCTTCCTTGGGAAAAGAAGCAACGGCTTTTCAAG CTCTTCTATGTTATTTTTATGCTTTTCCTCTCCTTATTTTGGTATGCTAATTAGATAAAAGCCTCGAACTCAACAAAAAA AAAGTCCTATTAACTTATTCTTACCAAGTGCGTTTTGCTGCAGGTTGATATACACATCACTGGATGACCAAGATAACTAG GTTTGTGGCGTTTAACTGCCACCATGTATCAAAGCCTATTCTGGACTACGGTGTATTCTTAAGCTTTGGTTGCCGGCATG TATCATTTATTGGACATTAGATAACTGCATGACTGTATTTTTATATCAATACACTTCAAGCAGTTTTGTTGCTTGTGGGA TTTTTGCATGTTTGAGAATAACGCAAAATGTTGAGTTCAAACATTTCCGTTCTACATGGCATGGTAGTGGTACCAAAATA ATATGGGTAAAGCTATTCATACTTGTAATATTTTTGCACATTTTAAACCAAATTGATCACCAACAATGTGTTGTTCTAGT GGTGAGCAAGCAAGATTTCTGTTAGGGTGAGAACAAAAGTTCGAATCTTGGGAAAGTCATTTGTTGGGAGAAACAACTAA TTTCTTGAACAAGTGGGGACATCCGGGTCAAAGACTAAAAAAAACTAATCGGATGAGATTATCAAGAATTGGAATTTGAT TTTCAATTTCCTTCTCTTTGAGATAGAGCTCTCATAGGTTTTTACTGTGCCACTCCAATAATTTCTTGGTTTCTTGGATG AAGCTGTTTACTGTGTGAATCCATCATA
CDS sequence (LotjaGi4g1v0212400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGATATCTTTGCGTGGCTCTTCTCCTTCTTCGTCCTTATTGGCTTAATTGTTCTCAACGTTTACCAGTTAATGTG TCTGGCAGACCTTGAATTTGATTACATAAATCCTTATGATTCCGCATCTCGAATAAACAAAGTGGTTTTGCCTGAGTATA TTACAGTAGGTGTCCTGCTCTGCTTCTACGTTGTAACAGGGCATTGGATAATGTCACTGTTCTGCCTTCCTTACCTCTAC TACAATGTGAGATTGTACAGACAGGGAAAACATCTAGTTGATGTTACAGAGATTTTCAACTTGCTTCCTTGGGAAAAGAA GCAACGGCTTTTCAAGCTCTTCTATGTTATTTTTATGCTTTTCCTCTCCTTATTTTGGTTGATATACACATCACTGGATG ACCAAGATAACTAG
Protein sequence (LotjaGi4g1v0212400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADIFAWLFSFFVLIGLIVLNVYQLMCLADLEFDYINPYDSASRINKVVLPEYITVGVLLCFYVVTGHWIMSLFCLPYLY YNVRLYRQGKHLVDVTEIFNLLPWEKKQRLFKLFYVIFMLFLSLFWLIYTSLDDQDN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 136 | 136 | 3.1E-79 | – | |
| Phobius | 1 | 29 | 29 | - | – | |
| PANTHER | 1 | 136 | 136 | 3.1E-79 | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| SMART | 4 | 125 | 122 | 6.1E-55 | ||
| Phobius | 5 | 20 | 16 | - | – | |
| Pfam | 5 | 125 | 121 | 1.5E-38 | ||
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 21 | 29 | 9 | - | – | |
| Phobius | 30 | 52 | 23 | - | – | |
| Phobius | 53 | 81 | 29 | - | – | |
| TMHMM | 54 | 76 | 23 | - | – | |
| Phobius | 82 | 109 | 28 | - | – | |
| Phobius | 110 | 129 | 20 | - | – | |
| TMHMM | 110 | 132 | 23 | - | – | |
| Phobius | 130 | 137 | 8 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. |
Expression pattern of LotjaGi4g1v0212400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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