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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0213100 |
| Transcript ID | LotjaGi4g1v0213100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Methylsterol monooxygenase 1-2; TAIR: AT4G12110.1 sterol-4alpha-methyl oxidase 1-1; Swiss-Prot: sp|Q8L7W5|SMO11_ARATH Methylsterol monooxygenase 1-1; TrEMBL-Plants: tr|G7JK82|G7JK82_MEDTR Sterol C4-methyl oxidase 1-2; Found in the gene: LotjaGi4g1v0213100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:49625372..49629363) extracted from Lotus japonicus Gifu genome v1.2.
GACAGAAAGACGTGAAAGAACAGGACAGAAAAACTGAAGTTGTGTCTATAAATAAGAGGCGTTTGTCATTTAAAAAATTC CCGCAAATATTTACACGTTGTAAGTTCTAACACAAGACAAACATCCAGCACAGCATCTCCAATTTCCAAATCAAATCTCT GACCCTCATTCTCTCTTTCCCTTTCTTTCATTATTATCTACACTTAACCACCTCACACCGCCGCCATCACCGCCGCCGCC GGCACTGTTATCTAGGGTTCCGGCGAGGATGCTTCCCTACCACTCAATTCACGAAGCCACGGCGGCTCTCGGCCGCAACC TCACCGCCGCGGAAACCCTATGGTTCAACTACTCCGCTACGAAGTCCGATTACTTCCTCTACTGCCACAACATTCTCTTC CTCTTCCTCATCTTCTCCCTCGTCCCTCTCCCCTTCGTCTTCCTCGAGATCAAACGCCTCTCCCCCTTCGACGATTACAA GATCCAACCCAAGGTTCGCCTCTCCCTCCGTGACATGTTCGTCTGCTACAAGTCCGTCATGCGCATGTTCTTCCTCGTCG TCGGTCCCCTCCAACTCGTCTCCTATCCTTCCATCCAGGTTCTTCCATTCTCACACCTTCACACCGTTCTTGTCACCGTT GCATTTCCATTACCCTGTGTGATTCAGCAATTTTTGTTTGTTTTGGTTTTGATTTGATTTTCAGATAATTGGGATCAGAA CGGGGTTGCCATTGCCATCAGGGTGGGAGATCCTGTGTCAATTGCTGGTGTATTTCGTGGTGGAGGATTACACCAATTAC TGGATCCACAGGTTTCTTCACAACAAGTGGGGTTACGAGAAGATTCATCGCGTTCACCATGAGTACCAGGCTCCGATTGG GTACGCGGCGCCGTATGCTCACTGGGCTGAGATCTTAATCCTTGGGATTCCGTCGTTTCTTGGTCCTGCTATGGTTCCTG GTCACATTATCACGTTCTGGCTGTGGATTGCGTTGCGCCAGATTGAGGCTATTGACACTCACAGCGGGTAAACCCTTTCT GTCCCTTTTGTTGATTTTCTTCAACAACCTTTAAAAAATGTGCTTTTCATTTCAACGATATCGAATCTAGTAGTGGGTTG CTTTTTCTCTTTACTGTTTCACGCCTTTTCACTCCTTCATACCTTTATTGTGATTTACGTTTCTTAGTAAGATGATGAAA ATCCTTCGCGGATTGTTTGTTTTTCGGTGTTTTAAGATGGTATGATTTGGTGCTAGTAGAGTGATTGGTGAGTGCTGGAA ATCTTCTAGCTGAAGGGATGAAATGGAGGTTTCAGAATGGTTTTTGTCTTTAACTGTTTGTTCACTCTTGCTTCTGCTTT GTCATTACCTTCATTTATGCTAGCTGGAAGTCCCTAAAGAACTTCACCGGTTGAATACAGCATAGTTACAATTATTATGA TAATAAGTGTTTAGTTTTGGCATTTGAGATAAAAGGAAAAGGAATTGAACAAAAACGGAAGGAGGGAGCTTTCTTTCATA TTTTGATATTGTTATCCATGTTTTCCGTTGTTTTTTATTTGTTAGAAAGCGCGAAAATGGACACTAACGGTTTTCCAAAC ATAATGGTAAACATTGTGATTCATTTTTAAGTTTCCAATATCAGCATGAGACCCGTGTGGTGGTAGTTATCATTTAACAA ACGTTATATGGCTGAAAGCTTGGTGCTGAAGAAGAAACTTGCTAGTGTTTACTTTTCTTGAAGGTACTATTGGGGAATAT TGTGATCAAGTGTGGTGCTAGTCTGCTGGATGCCATATTGAAATTCGTATAGGACAAAACATTCCTAGTTTGCTCTTTTG TTCTGTTCTCTTTTTCTTGTCAGCATTTGAACCTTGACCATCAAGATATTATTATGAAACAATTGCCATTTGGACCAGGA ATGCCGACTCTTAGTTTTTTGCTCTAATACATATAATGTTAAATAAGAAATAAATAATGTAGAAGTCAAATTGGAGTTTG TTTAGGACAAGTCATTTTGCAAGGCTTGGATCTAGTACATATAATGTTCTTAATTGTACTGAGAAATATATCTTTCTGGT GTTTTCTGTGTCAACAATATTGGCGTGTACACTACAGGACCTACTGGTTAAATGCAAAACTGAGAGTTAAATTGATTTCT ATAAATCACTTCTACAGTTTTTTTGGGTACATAAATCACTTCAACGGTTAATTGCTCTGGACTCTGGACCCAATATGTAA GCTATAAAGGTTTTATGTGTAGATACTCCCAATTATATCAGGAATATTCTTAGTTTTGCTGGGATGGAATATCCCTGCAG TGCTTTAAATTTCTAAATAAATGCTGATATTGCTCGTAGAAATTTATCTGGGTTGACTCTTTCTTCGCCATTGATATACA TCAGCATATATCCAACCCCCTCCTTTATGGGAAATTCAGTCTTCATTCTTCTCTAGTTTATGCATTGCAGTTTTGGTACC TGGCATTTATATTTTATTTACTACCTTATCATGCGTCAGGTATGACTTCCCCTGGAATCCCACAAAATATATTCCATTTT ATGGCGGCGCTGACTATCATGATTACCATCATTATGTTGGAGGACAAAGCCAAAGCAATTTTGCTTCAGTTTTCACATAC TGTGATTACATCTATGGAACTGACAAGGTTACATATCTGATTCTGAAATTATTTTTCTCTAAATAAATATCTGCGTGGTT TTATTTCCACATGTCAAATTGGGTTGCTAAGATTCTACTTTGTTATTGTCACAGGGTTACAGGTATCAGAAGAAAATACT TCGGAAGGTAAATTTATTAAGCTTTGTCATTTGAGAAATGTGATTCCATATTGTGGTTAAGAACATTTTGTTTTCCAAAA CAAAATGACACTCATGTTTGTTTCGGAATTTAATTTAATGATTGACTTTTTTTTCTCCGTCATTGCTGCTTTGTGAATTT ATGTAGTTAAAGGAAGATTTGACAAATGGCGCGGACCAGAATGGAGGATCGTACAAGACGCAGAGTTATAAATCTGACTG AGGGACAGAAGCATCCTTGGTGGTTTCAGAGTGTTGCATGTTATGAAACTACCAAATTTCTTGTAGTAGACATATATGCT GCTCTGATTAAATAGTAGATGTCTTTGGTTGGGGTCAGGATGGAGATTAGGAGAATGAGGCCTTACAAATTATGATTTTG TTTTAGAAGAGGGTCCGGGGTAGGAATTTCTTCTGTTGTCATGTTTTGGAATTAAAACATTTGGTTTTGGTTCCTTTCTG TCAGAATGACCCTTCCCCTATGTGTTGTAAATTCTGAAATATGAATCAGGCTTCCTCCTCCTGGATGTAATTCGAAAATC AAAATAATGTTTGAAGTTTGGTTTTATGAACTAGCTAGTAGTGGTTGTATCATAAGATTCCGGTTTAGAAATGATCTATT TCTGTAACTAGAAATTTCTAATGCCACACTCTAAGATCTTGTTTAGCGACGGGTATTTAGCGACGGGTTAGGAGCGTCCT AACCTCTCCTCTTAAGGGCACATGTCTCTTAGAGACCTACAACAATAGGTCGCCTCTTTAAACATAGGGGCCAAGTATTG TAACTTAAGTTCATGTAAATAAGGGAGAACTTAACCTTGCCTAATGGTAACAGGCTGGTTGCTACCGGGTCTGAGGCAGT GCTGCAGTTGGCACCCTGGTCCTGTTGTTTTCGTAGTGTTTTCCCGTTTCTTTTCTGTTTTGAATTGGCCTTTCTGGTCT GTTTGTTTGTTGTTGTTTTTCCTGTCTGTTTTATTTTCTGTTTTTTATCTTTCCCTTGTACTTTGGGCTGGTGCCTTCTT TATTTATATATATTTGGTTTTTCCAAAAAAACATAGACTCATCCTAGTTTTTTTTTTGGTACGACTCATCCTAGTTTAAC TCTACATTAAGTCGGCCGTCAAAAAAAAAAAAACTCTACATTAATCACCCATGTCAGTTGTCCAAAAAATAA
CDS sequence (LotjaGi4g1v0213100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTCCCTACCACTCAATTCACGAAGCCACGGCGGCTCTCGGCCGCAACCTCACCGCCGCGGAAACCCTATGGTTCAA CTACTCCGCTACGAAGTCCGATTACTTCCTCTACTGCCACAACATTCTCTTCCTCTTCCTCATCTTCTCCCTCGTCCCTC TCCCCTTCGTCTTCCTCGAGATCAAACGCCTCTCCCCCTTCGACGATTACAAGATCCAACCCAAGGTTCGCCTCTCCCTC CGTGACATGTTCGTCTGCTACAAGTCCGTCATGCGCATGTTCTTCCTCGTCGTCGGTCCCCTCCAACTCGTCTCCTATCC TTCCATCCAGATAATTGGGATCAGAACGGGGTTGCCATTGCCATCAGGGTGGGAGATCCTGTGTCAATTGCTGGTGTATT TCGTGGTGGAGGATTACACCAATTACTGGATCCACAGGTTTCTTCACAACAAGTGGGGTTACGAGAAGATTCATCGCGTT CACCATGAGTACCAGGCTCCGATTGGGTACGCGGCGCCGTATGCTCACTGGGCTGAGATCTTAATCCTTGGGATTCCGTC GTTTCTTGGTCCTGCTATGGTTCCTGGTCACATTATCACGTTCTGGCTGTGGATTGCGTTGCGCCAGATTGAGGCTATTG ACACTCACAGCGGGTATGACTTCCCCTGGAATCCCACAAAATATATTCCATTTTATGGCGGCGCTGACTATCATGATTAC CATCATTATGTTGGAGGACAAAGCCAAAGCAATTTTGCTTCAGTTTTCACATACTGTGATTACATCTATGGAACTGACAA GGGTTACAGGTATCAGAAGAAAATACTTCGGAAGTTAAAGGAAGATTTGACAAATGGCGCGGACCAGAATGGAGGATCGT ACAAGACGCAGAGTTATAAATCTGACTGA
Protein sequence (LotjaGi4g1v0213100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLPYHSIHEATAALGRNLTAAETLWFNYSATKSDYFLYCHNILFLFLIFSLVPLPFVFLEIKRLSPFDDYKIQPKVRLSL RDMFVCYKSVMRMFFLVVGPLQLVSYPSIQIIGIRTGLPLPSGWEILCQLLVYFVVEDYTNYWIHRFLHNKWGYEKIHRV HHEYQAPIGYAAPYAHWAEILILGIPSFLGPAMVPGHIITFWLWIALRQIEAIDTHSGYDFPWNPTKYIPFYGGADYHDY HHYVGGQSQSNFASVFTYCDYIYGTDKGYRYQKKILRKLKEDLTNGADQNGGSYKTQSYKSD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 293 | 293 | 5.9E-160 | – | |
| Phobius | 1 | 34 | 34 | - | – | |
| PANTHER | 1 | 293 | 293 | 5.9E-160 | – | |
| Phobius | 35 | 59 | 25 | - | – | |
| TMHMM | 36 | 58 | 23 | - | – | |
| Phobius | 60 | 79 | 20 | - | – | |
| Phobius | 80 | 98 | 19 | - | – | |
| TMHMM | 92 | 114 | 23 | - | – | |
| Phobius | 99 | 179 | 81 | - | – | |
| Pfam | 131 | 265 | 135 | 1.1E-30 | ||
| Phobius | 180 | 207 | 28 | - | – | |
| TMHMM | 183 | 205 | 23 | - | – | |
| Phobius | 208 | 302 | 95 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Iron ion binding | Interacting selectively and non-covalently with iron (Fe) ions. | ||
| Biological process | Lipid biosynthetic process | The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi4g1v0213100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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