Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0215200 |
| Transcript ID | LotjaGi4g1v0215200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | UDP-glucuronate 4-epimerase 4; TAIR: AT1G02000.1 UDP-D-glucuronate 4-epimerase 2; Swiss-Prot: sp|Q9LPC1|GAE2_ARATH UDP-glucuronate 4-epimerase 2; TrEMBL-Plants: tr|A0A072V0K9|A0A072V0K9_MEDTR UDP-D-glucuronate 4-epimerase; Found in the gene: LotjaGi4g1v0215200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:50302660..50307437) extracted from Lotus japonicus Gifu genome v1.2.
ATGACACCTGCATTTTTATACAGCTGAGTGGTAATGACATATTAAAGAGATTACTACCTTCTCAATTTCTCATGTCTATA CCTAATTCCTATATATTATCCCACCATAGAAACATGATGTAAATAAATAAATAAACACACCACCAACACCAAGCAAAGCA GGGTTTGGAGTTGGAAAAAATTGGAGGGTTGAGTTGAATGAAATGATGGAGGTGAATGAGCAAACACCTTCAACACCAGG CAAATTGAAGCCAGATAAATCTCCCTATATTCACCACCGCTTCAGAATCCACTCATCACTCTCCAGGCTCACACTCTGCT CCTCCTTCTTCCTCGCATTCACACTTCTCCTTTTCTTCTTCATCCTCTCCCCTCCTCCGCCGCCACCCGCCGCACCCCGC CGCGTCCTCGGCGACTCATGGGGCGGCCCTCTTTGGGAGAAGCGCGTCGCCAAGTCAGCTCGTCGCACTTCCGCCTCCGG CCTCACCGTCCTCGTCACCGGCGCTGCAGGCTTCGTCGGCACACACGTATCCTTAGCGCTGAAGCGCCGCGGTGATGGCG TCCTCGGTCTCGACAACTTCAACCGCTACTACGACCCCAACCTCAAGCGCGCCCGCCAGAGGCTCCTCGACCGCGCCGGC GTGTTTGTCGTCTCCGGCGACGTCAACGACGCTACGCTACTCCGGAAGCTCTTCGACGTTGTGCCGTTTACTCACGTGAT GCACCTCGCCGCGCAGGCTGGGGTTCGCTACGCGATGCAGAACCCTGGATCGTACGTGCACAGCAACATCGCCGGGTTCG TGAACCTTCTGGAAGCTTGCAAATCGGCGAACCCGCAACCCTCCATCGTCTGGGCTTCGTCGAGCTCCGTTTACGGCTTG AACTCGAAGGTCCCGTTCTCGGAGAAGGATCGGACGGACCAGCCTGCGAGCCTCTACGCGGCGACGAAGAAGGCCGGCGA GGAAATCGCCCACACCTACAACCACATCTATGGCCTCTCGATCACCGCGTTGCGGTTCTTCACTGTTTATGGACCTTGGG GAAGGCCTGACATGGCGTATTTCTTCTTCACGAAGGATATTCTGAAGGGGAAGCAGGTAACGATCTTTGAGGCACCAGAT GGTGGAACAGTGGCGAGGGATTTCACCTACATTGATGATGTTGTGAAGGGGTGTTTGGGGGCTTTGGATACGGCGAAGAA GAGTACTGGTAGTGGAGGAAAGAAGAAGGGGCCAGCTCAGTTTAGGGTTTTCAATTTGGGGAACACTTCGCCGGTGCCGG TGACTGAGCTTGTTAAGATATTGGAGAAGCTTCTGAAGGTTAAGGCTAAGAAGAAGGTGCTTCCTATGCCCAGAAATGGG GATGTTAGGTTTACACATGCCAATATCAGTTTGGCTCATAGGGACCTTGGTTATAGGCCTACCACTGATTTGGAGACAGG GTTAAGGAAGTTTGTGAAGTGGTACCTTGAGTTCTATTCTGGTTCTGGGTCTATTAAGAAGGCTGCTTGGTGATTCTTTT GCTTTGCTGCATTGCTCATTGGTGATTCTTTTCTCTGTAATTTGGTTCCTTACTTCCTTTTCATCTTGTGTTGTATGCCT GCCTTCTAGGTTATTTAGTCATTGTACATTGTTCAATTGAGACTTGGGAGATCAAATTGATATTAGTTATTTGTGCATGC TCTCTTTTCTTGTATGTTTTATGTTCAAATCATTACCTAGTAATCTGAAATTGTGCTTATGGAATCGTTTTGCTGTGTTT TTGGTTTAAACTAGCTTGTTTATGCTGAAGAATTCGATGCTTCCTGCATATAATTTTGCTACTGTTGCTTAGATAAATTT ATTGCTCTTGGATTCCTGATGTTATATGAGGGTGCTAATGCTTGCAAATGTGTAGGTACAGACTTGTGGAAGGACTTCTA TATGTTCATGTTATAGTGTGTTTGTTTTCATTGATGACAAATGTGATTTCACGTATCTCCAGGTACCAACGGGGATGTAA GCATTTTGCAGGAAGACATTGTGAATTGAAGAAGTAAGATTTTACCACATTAAGTTCTACATGGAGTCACATTGAATTCA ACGGAAATACAAACCCACTCTTAGTTTTAAGTAGGCATAAAGTGCATCTCAAAATTTCCAAATTATACACTTCAAGACAG CTTAACTGTCACACATTGCTTTTGTCAAGTGAATGTGGAGTATCTAGACAGGGCAATAGTGAAGTAGGCAGTTGAGCTGC AAGATTCGGTATGGTACCCCAAAATGCCCATGTCAGGTGGACAATGACACTGGAGCTGCAAAATTGTTGCATTCAAAATG ACTGAAGAAGCATGTGATTGAATCTCATCTGCAGTACTATTTATTTTACATTGCTTTCTAGTTCAAAGTAAGTTTAACTT TATTTGTCAGATACAGATTGATTAGTGACAGTCTATCTTGTTTCAACTCTTGCGTCGTTGTTAGACAGCGAGTGAAGAAG CTTCATACCAGCTGAAGTTGGACTGTTAAATCTTCATTCCTGTCAGTCAGTTTAGGCAACTGCACGTTTGGTCCTCAAAA GACAAAGGCAACAAATCTCTCTGGTATCTGTCCTCTTCATTGAAAGAACATAGTATTTCAATTTGAAAGAGAAAGTTCTC TCTTCAAAATTAAATTCCTCTATGTTATTGAAATGCTTTGATGAGTTGTTATTTTTTACTGAAGTAAACAGATGATTATA ATATCTGTTGCACCTGTGTAACTAGAGCTGAAATACATTGACACTGTTGGACTTGGACTCTTGTGCCTATTTGGAAGAGT CCAACTCTCTGCTCACTATTCTGTAGATTGTAATTTCAAGCTCAACTCAACCTACAATTGCTGGTTATACTAAATTACTA ATTGTTGAAAGTTAGGAAATAAACTCCACATTTGAGACTCAACTATTAATGAATCAGTCTCAAAAAACCAGAAATTCATT TCATTTCAGTGATGTGATGAGTCAAATTTGGTAGCTCAAGCTTTGCTCATTCGTTAGCTGGCTCACTCATTACCACTTTG GAATTCTGTCTTCCACTTGTAATATTTCTCTTGCGGCAGAAGTTTGCTTGCTCATACTGATACAATTTTATTTGTACTAG ATTCTCCAGAGAATGATTTTGATATTTCATTATGCTATCTTTTCTTCTCGATGAAACTCTTTATGAGCACTTCAAGTCCA TTAGTATAAACCATGAAATATTGAAATTGCTTGCTCCTTCAGTCCTTCTACTTTGGATTAACTTTGTTTTCTCGGATTCA ATTCAAGCACATAGAAGTTAGTCAAGTTACCCCCATAATTGATTTTGCCTTTGAAGATTTTCAAAATGATTGCTATATCA AAATTAAAAATCCGAACCCAAACATAGGAGACAAGGAATGGAAGTAATTTTTGCTTAATTTACATGATTCTCATTACTCA GTGCGGAGTCAAACACGCCATAAATGATGATAGTTTATTTTCGTTTGGTTGACTGTTAGATAGAGCATTTGAGTTCCAAA CATATTTTGTGTGCGCAATTTTGCAAAAGAAATATAAATGGCAACCTTTCAATTTTTTTTTGGGACGACCTTTCAATTTA ATGGTGCCGGTTTTGTGAGGCCATTAAATGATTGTACAAGATCTTAAACAATCACGGAGGACTTTTAGAGGGGTGGGTTG CTCACATGGTTGAGGTAAGTGTAATTGTAGGTGAAGGGTTAGGTTTGTGTAAGATCAAGGTTTGATCAGTGGTTGCATCT CTATGTTTTGATGATTACAATTAAGGTTTGTGATGATGAACAATTGTGGTACCCTAACGTTTGTCTTTTTAAGATGTGAC AAACAGGTTCTGAATCTGACCCAAGCCTATTCGTTCAGAAGAAGAAGAACCAAGGGTTACTAAAAAGAGAGCTCTTTATC CTACCATGTTCGTTCTGAACAGTGGCAAATACTTCAGAAGCTCTGAAGTTGGAAGCTCTCAAGAAGTTCTGAAGAACCCA AGTCAGAAGTTCTGAAGACCAGATGTTCCAGTGGAACGGTCCAGAAGCAGAAGACTCAAGTTCTGAAGACTTCCAAGAAG TTGGTTCTGAAGACCCAAGCTATTCTAGCTCTGACGATCAGAAGTTCTGAGGAACTTGTTCAGAAGCAGAAGTTGCAAGG TCAGAAGAATCCAAGCTTCAATCTGACGATGTTCAGAAGCTTCACCAACGTTCATCTGAAGGTCCTTGATCACAAGTCAA CTGGTGAAAGGACAGGTCGCTATCACAGTACAACGTCGTACAAGTCTCAGTCTGTCCGCCACCTACCTTGTACAACCTAG CAGTCTGATATTACAGAATTGCCACTCCAACGGATAAAACCCTAGCAACGGCTACATCACAAGTCTTGGAGTATATAAAG GCTGAAGAAAGAAGAAAGAAGTTAAGAAACTTTGCTGAAATCATCCAATTCATTCGAACCAAGCTCTTAGCATTATTTCT TCACTGTTCTTAAACATCTGAGTTTACTATTAGCTTTTTAGAAGCACTCATTGTCAACCCGAAACCTTTTACATCACATT GTAAAGTTCCTTAAGAGACCAAGGTTGGTCGGATCTTGAGAGGACTGAATCAAGGCTGATTCAGTGTTCAGCTAGTCTTA AGAGGATCGGTAGATCAGCTTCTTAAGAGGATACTAGTGAGAAAATCAGTGTATTGTTAGCCACTTAGCAGGTTGCAAAG TGCAGTTGTAACACTCATTGATTTTAGTGGATTGCCTTCATCAGAAGAAGGAAGAAAT
CDS sequence (LotjaGi4g1v0215200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGAGGTGAATGAGCAAACACCTTCAACACCAGGCAAATTGAAGCCAGATAAATCTCCCTATATTCACCACCGCTT CAGAATCCACTCATCACTCTCCAGGCTCACACTCTGCTCCTCCTTCTTCCTCGCATTCACACTTCTCCTTTTCTTCTTCA TCCTCTCCCCTCCTCCGCCGCCACCCGCCGCACCCCGCCGCGTCCTCGGCGACTCATGGGGCGGCCCTCTTTGGGAGAAG CGCGTCGCCAAGTCAGCTCGTCGCACTTCCGCCTCCGGCCTCACCGTCCTCGTCACCGGCGCTGCAGGCTTCGTCGGCAC ACACGTATCCTTAGCGCTGAAGCGCCGCGGTGATGGCGTCCTCGGTCTCGACAACTTCAACCGCTACTACGACCCCAACC TCAAGCGCGCCCGCCAGAGGCTCCTCGACCGCGCCGGCGTGTTTGTCGTCTCCGGCGACGTCAACGACGCTACGCTACTC CGGAAGCTCTTCGACGTTGTGCCGTTTACTCACGTGATGCACCTCGCCGCGCAGGCTGGGGTTCGCTACGCGATGCAGAA CCCTGGATCGTACGTGCACAGCAACATCGCCGGGTTCGTGAACCTTCTGGAAGCTTGCAAATCGGCGAACCCGCAACCCT CCATCGTCTGGGCTTCGTCGAGCTCCGTTTACGGCTTGAACTCGAAGGTCCCGTTCTCGGAGAAGGATCGGACGGACCAG CCTGCGAGCCTCTACGCGGCGACGAAGAAGGCCGGCGAGGAAATCGCCCACACCTACAACCACATCTATGGCCTCTCGAT CACCGCGTTGCGGTTCTTCACTGTTTATGGACCTTGGGGAAGGCCTGACATGGCGTATTTCTTCTTCACGAAGGATATTC TGAAGGGGAAGCAGGTAACGATCTTTGAGGCACCAGATGGTGGAACAGTGGCGAGGGATTTCACCTACATTGATGATGTT GTGAAGGGGTGTTTGGGGGCTTTGGATACGGCGAAGAAGAGTACTGGTAGTGGAGGAAAGAAGAAGGGGCCAGCTCAGTT TAGGGTTTTCAATTTGGGGAACACTTCGCCGGTGCCGGTGACTGAGCTTGTTAAGATATTGGAGAAGCTTCTGAAGGTTA AGGCTAAGAAGAAGGTGCTTCCTATGCCCAGAAATGGGGATGTTAGGTTTACACATGCCAATATCAGTTTGGCTCATAGG GACCTTGGTTATAGGCCTACCACTGATTTGGAGACAGGGTTAAGGAAGTTTGTGAAGTGGTACCTTGAGTTCTATTCTGG TTCTGGGTCTATTAAGAAGGCTGCTTGGTGA
Protein sequence (LotjaGi4g1v0215200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMEVNEQTPSTPGKLKPDKSPYIHHRFRIHSSLSRLTLCSSFFLAFTLLLFFFILSPPPPPPAAPRRVLGDSWGGPLWEK RVAKSARRTSASGLTVLVTGAAGFVGTHVSLALKRRGDGVLGLDNFNRYYDPNLKRARQRLLDRAGVFVVSGDVNDATLL RKLFDVVPFTHVMHLAAQAGVRYAMQNPGSYVHSNIAGFVNLLEACKSANPQPSIVWASSSSVYGLNSKVPFSEKDRTDQ PASLYAATKKAGEEIAHTYNHIYGLSITALRFFTVYGPWGRPDMAYFFFTKDILKGKQVTIFEAPDGGTVARDFTYIDDV VKGCLGALDTAKKSTGSGGKKKGPAQFRVFNLGNTSPVPVTELVKILEKLLKVKAKKKVLPMPRNGDVRFTHANISLAHR DLGYRPTTDLETGLRKFVKWYLEFYSGSGSIKKAAW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 35 | 35 | - | – | |
| PANTHER | 9 | 428 | 420 | 1.3E-238 | – | |
| PANTHER | 9 | 428 | 420 | 1.3E-238 | – | |
| TMHMM | 33 | 55 | 23 | - | – | |
| Phobius | 36 | 55 | 20 | - | – | |
| Phobius | 56 | 90 | 35 | - | – | |
| Phobius | 91 | 113 | 23 | - | – | |
| SUPERFAMILY | 92 | 427 | 336 | 1.04E-84 | ||
| Pfam | 96 | 333 | 238 | 7.2E-50 | ||
| Gene3D | 97 | 408 | 312 | 6.9E-93 | – | |
| Phobius | 114 | 436 | 323 | - | – | |
| PRINTS | 122 | 138 | 17 | 1.4E-28 | – | |
| Gene3D | 273 | 420 | 148 | 6.9E-93 | – | |
| PRINTS | 312 | 327 | 16 | 1.4E-28 | – | |
| PRINTS | 347 | 362 | 16 | 1.4E-28 | – | |
| PRINTS | 387 | 404 | 18 | 1.4E-28 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Coenzyme binding | Interacting selectively and non-covalently with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed. |
Expression pattern of LotjaGi4g1v0215200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…