Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0216700 |
| Transcript ID | LotjaGi4g1v0216700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb factor; TAIR: AT4G22680.1 myb domain protein 85; Swiss-Prot: sp|Q50EX6|ODO1_PETHY Protein ODORANT1; TrEMBL-Plants: tr|A0A0L9TPY6|A0A0L9TPY6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0216700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:50986210..50988905) extracted from Lotus japonicus Gifu genome v1.2.
CATAATCATTTTACGCATTATTCTTATATATACTTTATAGGATGCTAACACATATCCCTCCTCTTGAGTCACCCATCTTT TAGCATCACCCATTTTGTGCAGCTAGAAACACCAGAATAACCCCCATTAGTTGCCACATACCTTTCACAACCCATGGTGG AGCCCCCAACCTTCCCCTGTTTCTCCCTGCCTCCTGAGAGCTTTGTTTTCTAAAATGCATATTTTCATTTCCTATATAGA ATATAATTAATTTACTAACAAGTTATTGGTCTGAGCCGTACATAATTGATTCCTACAATTCAAGTTTTGTGTAAGAAATA AAAAAAAACCCTCACTAAAAAAGTTAGCCCTAGCAAAATGTAAATGCTCTCGACTCGTCATGGAAGATATATGTCGGGTC ATGCGTTGCTTAAAATTTCGGTATATATCCCTATTGAATTATAAGAGCAAACAACATAAATGAATAAAACATCATATCCT TAAGTGAATTATGTGGTGTCCATATCACTTCTATCGTTTGCTTTTATAACCTAAAATAGAGATCACAGTACATGTGTTAC ATCAAGATATATAATTAATTTATTAGGCTAGAAAAGGAGAGAGCTTTATATAAAGGTGGGTGTGGGACTTTTGAGTCATT GCAAGGTAGTGTTGGTGAGACTTTTGCATTAGTTTTGTATTGGTGTTGCTGTTGTTGAATTAGTGCTATGGGCAGGCAAC CTTGCTGTGACAAACTTGGGGTGAAGAAAGGTCCATGGACAGCAGAGGAAGACAAGAAGCTCATCAACTTCATTCTCACC AATGGCCAGTGTTGTTGGCGTGCTGTGCCAAAGCTTGCTGGCCTTAAGCGTTGCGGCAAGAGTTGCAGGCTTCGTTGGAC TAATTATCTTCGCCCAGACCTCAAGAGAGGGCTCCTCACAGAAGCTGAGGAGCAGCTTGTGATTGATCTTCATGCCCGTC TTGGCAACAGGTTGATTATTTGTTATTTGCTCATGCATTGCCTTGTATATGCGCCGGTGCCTCAAATTCTTGTCCCACCA ATAAAATCTTGATATGTCAATTAAAGAAGAAATGTGGAACTGTTATGAATTTACATAATGATTTTTAATTGATACGTCAC AGGTTGGGTACATCAGATTTCAATAAAAAACCTTGTTTTTATACAATGTTTACTTAAGGCTCAAGTAATTGAATACTTGG CTGGTTTTCTAATTAGAATATGTTAACATATTTATGCATTTTAAAATAGTAATGTATGGAAAAAATCACGATCGGAAAGG TAGTTCTATTAAAATGTAGATGTTTTCAGTTCAAAGATGATTGTTTTTCATGTTGAGTATTTATATTAGACAAAAAAAGA CACTAATATAGCATCTATCTAATTCTCATTTTCTTTGGAAGCTATAAATGAAGTGTTCCTATATGCATATGCAGGGACGG AACGGAACCAGAAAAAAATTTAGGAGGTTGAATACCACATTTACATACTACTTTATGTAAAGAAAAATTTTCTTTTGGGG TGGAACATCCTATTTCAGAACGCCTAGTTCCATCCCTACCTACTTGCTGCATACTAAATGGCATACAAATTTGGAAATCA TATGTTAGTTGGTCTGTGTAATTAATGTTTGATAATAACTTAAGAAAAAACATCAATGTTTGATAAAAAAATGTTACTAA TTTGGAGCTGAAGTTGATATTCATTTTTTAAGAAGAAAAATAAATTGTCAGCAGTTGCATGCTTTTTGCTGTCTCAGGTG GTCCAAGATTGCTTCAAAGTTACCAGGAAGAACAGACAATGAGATTAAAAATCACTGGAACACCCACATCAAGAAAAAAC TTCTCAAGATGGGGATTGATCCAGTTACACATGAATCTCTCAATAAACAAGCTGAACTCAAGGACAGTTCACTATCCCCT GCCGAGCCATTGCCACCACAACCTCATGAGGTCAAGGAAAGTACTGAAGGGGTTCTCAACAACTCTGAGGATCAGAATTC TAGCTCATCCCCAGATGAAAATTCTTCTGGAGAAGAATCCCTTTTGCTAGATAGCATTTGTAGTGATGACTCACTAATAA ATAGCTTGTGGTTGGATGAAACTCCTCTGGTGGAAGCATTGTGGGACTCTGCACCTATAGCACCTGATGACAATACTAAA ATTGACATGGGTTTGGTGTCATCTTGGGAGGATAATTGTGCTTGGCTATTTGACTGTGAGGACTTTGGTATTCATGATTT TGGGTTTAACTCTTTCGATGAGGTAGAGTCTTGTCCATTGCAAACTATAGAGATGAAAGAAGAGGAGCATTAGCGTGCAT CAAATCTGGTGAAGAGAAAATTCAAAAATCTGTATATGTGACTAAATACCATGGACTCAAATTTATGTTCTTGGTGTTGA ACTTTATCTTAGTTAGTATTCTACAGAATGTTCTTGGAAGGTGGAAGGTGAACCTTTACCCTTATGAGGTTCCTCGCCAA CCAAATCACAAAAGTGATAGCAAACCAGATCAAAATCATCAAAGTGCCACATTACATGCTCTTTTTTTTCTTTTCTAAAA TACTGTAATTTTATGTGTACGCTAGAGACAAAACAATTGAGAAATGTCAGAGCAGGTACTAGTGGGTTCTGAAACTATTG TAAAAAGATGTTTACATTGAATATAATGGTATAGTATTATGTGATTATAAGTTCAA
CDS sequence (LotjaGi4g1v0216700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCAGGCAACCTTGCTGTGACAAACTTGGGGTGAAGAAAGGTCCATGGACAGCAGAGGAAGACAAGAAGCTCATCAA CTTCATTCTCACCAATGGCCAGTGTTGTTGGCGTGCTGTGCCAAAGCTTGCTGGCCTTAAGCGTTGCGGCAAGAGTTGCA GGCTTCGTTGGACTAATTATCTTCGCCCAGACCTCAAGAGAGGGCTCCTCACAGAAGCTGAGGAGCAGCTTGTGATTGAT CTTCATGCCCGTCTTGGCAACAGGTGGTCCAAGATTGCTTCAAAGTTACCAGGAAGAACAGACAATGAGATTAAAAATCA CTGGAACACCCACATCAAGAAAAAACTTCTCAAGATGGGGATTGATCCAGTTACACATGAATCTCTCAATAAACAAGCTG AACTCAAGGACAGTTCACTATCCCCTGCCGAGCCATTGCCACCACAACCTCATGAGGTCAAGGAAAGTACTGAAGGGGTT CTCAACAACTCTGAGGATCAGAATTCTAGCTCATCCCCAGATGAAAATTCTTCTGGAGAAGAATCCCTTTTGCTAGATAG CATTTGTAGTGATGACTCACTAATAAATAGCTTGTGGTTGGATGAAACTCCTCTGGTGGAAGCATTGTGGGACTCTGCAC CTATAGCACCTGATGACAATACTAAAATTGACATGGGTTTGGTGTCATCTTGGGAGGATAATTGTGCTTGGCTATTTGAC TGTGAGGACTTTGGTATTCATGATTTTGGGTTTAACTCTTTCGATGAGGTAGAGTCTTGTCCATTGCAAACTATAGAGAT GAAAGAAGAGGAGCATTAG
Protein sequence (LotjaGi4g1v0216700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRQPCCDKLGVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLKRCGKSCRLRWTNYLRPDLKRGLLTEAEEQLVID LHARLGNRWSKIASKLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHESLNKQAELKDSSLSPAEPLPPQPHEVKESTEGV LNNSEDQNSSSSPDENSSGEESLLLDSICSDDSLINSLWLDETPLVEALWDSAPIAPDDNTKIDMGLVSSWEDNCAWLFD CEDFGIHDFGFNSFDEVESCPLQTIEMKEEEH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 260 | 258 | 8.8E-124 | – | |
| PANTHER | 3 | 260 | 258 | 8.8E-124 | ||
| ProSiteProfiles | 9 | 61 | 53 | 13.76 | ||
| SUPERFAMILY | 11 | 108 | 98 | 1.91E-27 | ||
| Gene3D | 12 | 67 | 56 | 9.8E-18 | – | |
| SMART | 13 | 63 | 51 | 5.1E-13 | ||
| Pfam | 14 | 61 | 48 | 2.0E-13 | ||
| CDD | 16 | 61 | 46 | 4.37877E-9 | ||
| ProSiteProfiles | 62 | 116 | 55 | 27.557 | ||
| SMART | 66 | 114 | 49 | 2.0E-15 | ||
| Pfam | 70 | 111 | 42 | 5.8E-14 | ||
| CDD | 71 | 112 | 42 | 1.3848E-11 | ||
| Gene3D | 71 | 139 | 69 | 3.9E-20 | – | |
| MobiDBLite | 132 | 181 | 50 | - | – | |
| MobiDBLite | 156 | 181 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi4g1v0216700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…