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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0218100 |
| Transcript ID | LotjaGi4g1v0218100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 3,5-epimerase/4-reductase; TAIR: AT1G63000.1 nucleotide-rhamnose synthase/epimerase-reductase; Swiss-Prot: sp|Q9LQ04|RMLCD_ARATH Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase; TrEMBL-Plants: tr|A0A067FK86|A0A067FK86_CITSI Uncharacterized protein; Found in the gene: LotjaGi4g1v0218100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:51190216..51191434) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGGTTCCCAGCCAACGGTGGTGCTTCCGGCGAGAAGCCTCTCAAGTTCCTCATCTACGGCCGCACCGGATGGATTGG CGGCCTGCTGGGAAGCCTATGCCGAGCCCAGGGGATCGATTTCGAATACGGCTCCGGCCGCCTCGAGAACCGCGCCTCCC TGGAAACTGACATCGCGGAGGTGAAGCCAACTCACGTGTTCAACGCCGCCGGTGTCACTGGTCGCCCCAACGTGGACTGG TGTGAGACTAACAAGGTCGAGACCATCCGCGCCAACGTGGTTGGCACGCTCACGCTTGCTGATGTGTGCCGTGAGCGCGG AATCATCGTCGTCAACTTCGCCACCGGCTGCATCTTCGAGTACGATTCCGGTCATCCCCTCGGATCTGGTATCGGATTCA AGGAAGAGGATTCTCCTAATTTCATCGGTTCGTTCTACTCCAAAACCAAAGCCATGGTTGGTTAATCTCTCACTCTCTCT TTCGCAATCGAATCTCATGCTTTGAATCATTGATTTCGATGCGATTGTTCACAAATCGAAATGCAGATTTGTGAAATTGT TTACTTCGATTGATCTGTAACTTCAGATCTGTTTTGTATAGAAATTACTAGTACTAATTGGATCAAATCGATATACACAA TATGATGAATGAATCAAACAGATTTCAGTGTGTTGATTTCGATTTCAATTTTCAATCACAATGTTAAACAGGAAATTTTG ATTCAGATTTGAGAATCTGAATCGTTCGATTACTCTGTTTCATCTACAGGTTGAAGATCTACTGAGGAATTATGATAATG TGTGTACCTTGCGAGTGAGGATGCCGATCTCATCAGATTTATCAAACCCGCGCAATTTCATCACGAAGATCTCTCGCTAC GAGAAGGTGGTGGACATTCCAAATTCAATGACAATCCTGGACGAGCTTCTTCCCATCTCGATTGAGATGGCGAAGAGGAA TCTCACTGGGATCTGGAACTTCACAAACCCTGGAGTGGTGAGCCACAATGAGATCTTAGCAATGTACAAGGAGTATATTG ACTCAAACTTCACCTGGAAGAATTTCACCCTTGAGGAACAGGCCAAGGTCATTGTTGCTCCCCGGAGCAACAATGAGCTT GATGCAGGGAAATTGAGCAAGGAGTTTCCAGAATTGTTGCCCATTAAGGAGTCACTCATTAAGTATGTCTTCAAGCCAAA CCAGAAGGTTAAGGCTTAA
CDS sequence (LotjaGi4g1v0218100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGTTCCCAGCCAACGGTGGTGCTTCCGGCGAGAAGCCTCTCAAGTTCCTCATCTACGGCCGCACCGGATGGATTGG CGGCCTGCTGGGAAGCCTATGCCGAGCCCAGGGGATCGATTTCGAATACGGCTCCGGCCGCCTCGAGAACCGCGCCTCCC TGGAAACTGACATCGCGGAGGTGAAGCCAACTCACGTGTTCAACGCCGCCGGTGTCACTGGTCGCCCCAACGTGGACTGG TGTGAGACTAACAAGGTCGAGACCATCCGCGCCAACGTGGTTGGCACGCTCACGCTTGCTGATGTGTGCCGTGAGCGCGG AATCATCGTCGTCAACTTCGCCACCGGCTGCATCTTCGAGTACGATTCCGGTCATCCCCTCGGATCTGGTATCGGATTCA AGGAAGAGGATTCTCCTAATTTCATCGCAATCCTGGACGAGCTTCTTCCCATCTCGATTGAGATGGCGAAGAGGAATCTC ACTGGGATCTGGAACTTCACAAACCCTGGAGTGGTGAGCCACAATGAGATCTTAGCAATGTACAAGGAGTATATTGACTC AAACTTCACCTGGAAGAATTTCACCCTTGAGGAACAGGCCAAGGTCATTGTTGCTCCCCGGAGCAACAATGAGCTTGATG CAGGGAAATTGAGCAAGGAGTTTCCAGAATTGTTGCCCATTAAGGAGTCACTCATTAAGTATGTCTTCAAGCCAAACCAG AAGGTTAAGGCTTAA
Protein sequence (LotjaGi4g1v0218100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGFPANGGASGEKPLKFLIYGRTGWIGGLLGSLCRAQGIDFEYGSGRLENRASLETDIAEVKPTHVFNAAGVTGRPNVDW CETNKVETIRANVVGTLTLADVCRERGIIVVNFATGCIFEYDSGHPLGSGIGFKEEDSPNFIAILDELLPISIEMAKRNL TGIWNFTNPGVVSHNEILAMYKEYIDSNFTWKNFTLEEQAKVIVAPRSNNELDAGKLSKEFPELLPIKESLIKYVFKPNQ KVKA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 6 | 142 | 137 | 2.2E-36 | – | |
| PANTHER | 12 | 143 | 132 | 5.6E-99 | – | |
| PANTHER | 12 | 143 | 132 | 5.6E-99 | – | |
| SUPERFAMILY | 13 | 219 | 207 | 1.34E-21 | ||
| Pfam | 16 | 123 | 108 | 7.0E-10 | ||
| Gene3D | 143 | 244 | 102 | 7.0E-18 | – | |
| PANTHER | 148 | 242 | 95 | 5.6E-99 | – | |
| PANTHER | 148 | 242 | 95 | 5.6E-99 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0218100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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