Domain Predictions — View

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PF04321

Source: Pfam

Description

RmlD substrate binding domain

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 15

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0024229.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: probable rhamnose biosynthetic enzyme 1-like [Glycine max] gi\|356525600\|ref\|XP_003531412.1\|	Domains G3DSA:3.40.50.720 G3DSA:3.90.25.10 IPR016040 IPR029903 PF04321 PF16363 PTHR10366 PTHR10366:SF385 SSF51735 cd05246 cd05254	11
Lj0g3v0024229.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: probable rhamnose biosynthetic enzyme 1-like [Glycine max] gi\|356525600\|ref\|XP_003531412.1\|	Domains G3DSA:3.40.50.720 G3DSA:3.90.25.10 IPR016040 IPR029903 PF04321 PF16363 PTHR10366 PTHR10366:SF385 SSF51735 cd05246 cd05254	11
Lj0g3v0024229.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: probable rhamnose biosynthetic enzyme 1-like [Glycine max] gi\|356556634\|ref\|XP_003546628.1\|	Domains G3DSA:3.40.50.720 G3DSA:3.90.25.10 IPR005888 IPR016040 IPR029903 PF04321 PF16363 PTHR10366 PTHR10366:SF385 SSF51735 TIGR01181 cd05246 cd05254	13
Lj0g3v0131469.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Methionine adenosyltransferase 2 subunit beta [Medicago truncatula] gi\|357514671\|ref\|XP_003627624.1\|	Domains G3DSA:3.40.50.720 IPR005913 IPR016040 IPR029903 PF04321 PTHR10491 PTHR10491:SF7 SSF51735	8
Lj2g3v2003110.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: probable rhamnose biosynthetic enzyme 1 [Vitis vinifera] gi\|225426743\|ref\|XP_002282339.1\|	Domains G3DSA:3.40.50.720 IPR016040 IPR029903 PF04321 PTHR10366 PTHR10366:SF405 SSF51735 cd05254	8
Lj4g3v1327750.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: probable rhamnose biosynthetic enzyme 1-like [Cicer arietinum] gi\|502176054\|ref\|XP_004515790.1\|	Domains G3DSA:3.40.50.720 IPR016040 IPR029903 PF04321 PTHR10366 PTHR10366:SF405 SSF51735 cd05254	8
LotjaGi2g1v0430400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	3,5-epimerase/4-reductase; TAIR: AT1G63000.1 nucleotide-rhamnose synthase/epimerase-reductase; Swiss-Prot: sp\|Q9LQ04\|RMLCD_ARATH Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase; TrEMBL-Plants: tr\|F6HUI7\|F6HUI7_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi2g1v0430400	Domains G3DSA:3.40.50.720 IPR029903 IPR036291 PF04321 PTHR10366 PTHR10366:SF405 SSF51735 cd05254	8
LotjaGi3g1v0039200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Udp-glucose 4,6-dehydratase; TAIR: AT1G78570.1 rhamnose biosynthesis 1; Swiss-Prot: sp\|Q9SYM5\|RHM1_ARATH Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1; TrEMBL-Plants: tr\|A0A1J7GF13\|A0A1J7GF13_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0039200	Domains G3DSA:3.40.50.720 G3DSA:3.90.25.10 IPR005888 IPR016040 IPR029903 IPR036291 PF04321 PF16363 PTHR43000 PTHR43000:SF21 SSF51735 cd05246 cd05254	13
LotjaGi3g1v0039200.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Udp-glucose 4,6-dehydratase; TAIR: AT1G78570.1 rhamnose biosynthesis 1; Swiss-Prot: sp\|Q9SYM5\|RHM1_ARATH Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1; TrEMBL-Plants: tr\|A0A1J7GF13\|A0A1J7GF13_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0039200	Domains G3DSA:3.40.50.720 G3DSA:3.90.25.10 IPR005888 IPR016040 IPR029903 IPR036291 PF04321 PF16363 PTHR43000 PTHR43000:SF21 SSF51735 cd05246 cd05254	13
LotjaGi3g1v0039300.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Udp-glucose 4,6-dehydratase; TAIR: AT1G78570.1 rhamnose biosynthesis 1; Swiss-Prot: sp\|Q9SYM5\|RHM1_ARATH Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1; TrEMBL-Plants: tr\|A0A1J7GF13\|A0A1J7GF13_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0039300	Domains G3DSA:3.40.50.720 G3DSA:3.90.25.10 IPR005888 IPR016040 IPR029903 IPR036291 PF04321 PF16363 PTHR43000 PTHR43000:SF21 SSF51735 TIGR01181 cd05246 cd05254	14
LotjaGi3g1v0039300.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Udp-glucose 4,6-dehydratase; TAIR: AT1G78570.1 rhamnose biosynthesis 1; Swiss-Prot: sp\|Q9SYM5\|RHM1_ARATH Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1; TrEMBL-Plants: tr\|A0A1J7GF13\|A0A1J7GF13_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0039300	Domains G3DSA:3.40.50.720 G3DSA:3.90.25.10 IPR005888 IPR016040 IPR029903 IPR036291 PF04321 PF16363 PTHR43000 PTHR43000:SF21 SSF51735 TIGR01181 cd05246 cd05254	14
LotjaGi3g1v0039300.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Udp-glucose 4,6-dehydratase; TAIR: AT1G78570.1 rhamnose biosynthesis 1; Swiss-Prot: sp\|Q9SYM5\|RHM1_ARATH Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1; TrEMBL-Plants: tr\|A0A1J7GF13\|A0A1J7GF13_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0039300	Domains G3DSA:3.40.50.720 G3DSA:3.90.25.10 IPR005888 IPR016040 IPR029903 IPR036291 PF04321 PF16363 PTHR43000 PTHR43000:SF21 SSF51735 TIGR01181 cd05246 cd05254	14
LotjaGi3g1v0039300.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Udp-glucose 4,6-dehydratase; TAIR: AT1G78570.1 rhamnose biosynthesis 1; Swiss-Prot: sp\|Q9SYM5\|RHM1_ARATH Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1; TrEMBL-Plants: tr\|A0A1J7GF13\|A0A1J7GF13_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0039300	Domains G3DSA:3.40.50.720 G3DSA:3.90.25.10 IPR005888 IPR016040 IPR029903 IPR036291 PF04321 PF16363 PTHR43000 PTHR43000:SF21 SSF51735 TIGR01181 cd05246 cd05254	14
LotjaGi4g1v0218100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	3,5-epimerase/4-reductase; TAIR: AT1G63000.1 nucleotide-rhamnose synthase/epimerase-reductase; Swiss-Prot: sp\|Q9LQ04\|RMLCD_ARATH Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase; TrEMBL-Plants: tr\|I3SMF8\|I3SMF8_MEDTR 3,5-epimerase/4-reductase; Found in the gene: LotjaGi4g1v0218100	Domains G3DSA:3.40.50.720 IPR029903 IPR036291 PF04321 PTHR10366 PTHR10366:SF405 SSF51735 cd05254	8
LotjaGi4g1v0218100.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	3,5-epimerase/4-reductase; TAIR: AT1G63000.1 nucleotide-rhamnose synthase/epimerase-reductase; Swiss-Prot: sp\|Q9LQ04\|RMLCD_ARATH Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase; TrEMBL-Plants: tr\|A0A067FK86\|A0A067FK86_CITSI Uncharacterized protein; Found in the gene: LotjaGi4g1v0218100	Domains G3DSA:3.40.50.720 IPR029903 IPR036291 PF04321 PTHR10366 PTHR10366:SF405 SSF51735	7

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
SSF51735	SUPERFAMILY	1	6.67