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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0218500 |
| Transcript ID | LotjaGi4g1v0218500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Hydroxymethylglutaryl-CoA synthase; TAIR: AT4G11820.2 hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase; Swiss-Prot: sp|P54873|HMCS_ARATH Hydroxymethylglutaryl-CoA synthase; TrEMBL-Plants: tr|A0A075EBV0|A0A075EBV0_ASTME 3-hydroxy-3-methylglutaryl coenzyme A synthase; Found in the gene: LotjaGi4g1v0218500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:51263808..51269223) extracted from Lotus japonicus Gifu genome v1.2.
GTTTTTGACAACCCAGATGTGGTTGTTGGGTTGAACATGTGTGTGAAACTCCGTCACTATAGGACACTGAGGAATCTTGG TTCGTGCCAGTTGCATCCTGCAAGCCTCACGAGACCTGCATTTTTATCATTTTTTTTCTCAGCCAAGTTTTTTCTTAAAA AACTAAAAATAAAGAGGGAATAGGGAATTTTGATTTTTTTCGTCTTCATATATTATATCACTCTCACAACAGAAACACAG CACGTAATAAGACTCATTCAACCTCTTCCTCTCGTTCTCTCTTCCAATTCCAATTCTGCAGCATAAAACAGAGAGAGAGA GACCCATTGGATCTTCAGAACCGCTCAGCTCAAATGGCCAAGAATGTTGGAATCCTCGCCATCGACGTCTACTTCCCTTC CACCTGCGTTCAGCAGGTCAATTCATCTCTCTCTCTTCAATCAATTCTCCTCTCAATCATTTCTGATGCGTTTTTCATTT AATCGTGTTTTATGATAATCCAGTGAAATCCATGAGATCCCCCTTAAACTGAAGCAATTTTCATGTTTTTTTGATGTAAT GTTTTTTCAGCTTCTTAATTTGTTGTTATGAATACATGCAGGAAGCACTTGAGGCTCATGATGGTGCCAGTAAAGGGAAA TATACTATTGGATTGGGACAGGACTGCATGGCGTTTTGCACAGATATAGAAGATGTCATCTCAATGAGGTTTTTATATTT TGGATTTGATAGCTGATACGGTGATACCATTATGTTTGGACTTGCCCTTGCATGGAGTTTTTATTGCTGTGATGTGATAG AGGCACAATTGAATTTAGTGTGAGGGAAGGGAAGACAGAAAAAACATATAACATCAAGAGACGAGGCTTTATTTGTTTTC CCCCTTTTTGAGTGTATCTTATAGCATAATTCAAGTGTTTGGGAGAGTTTATGTAAATAGCTTATGATCTACATAGAAGC CATTTTATAAGTTTATCAAATTAGCTTATGAATAAGCGCTTATGCGCATAAATACTTAATTAAGTTGTATACCCAAATGC ACCCTAAATATATAAAGGACTAAAGGAGTATTTACAAAGTTGGGGAACCAAGGCATACCCTTACCCGCTTACCCCCCTCT GCCTCTGATTTAGTTTTATATCTTTTTTTGGTTATTCTCTTAGTATCATATCTCAAAGTTCTGTAAATGCTGAAGTATAC AAATTACAAGCTTTACATAATGGTTTTTCGGAGTCCGTCACTGAAACATGCAAAGTGGTGTTTTTGGTAAGTACCACCCG TGATGAAGATTCAGCTCCTATCAAATGTTTATGATGAAATCATAAACTGTTTAAATCCATGTGAAGGTGATTAGCTTGTT GGATTGCACAAAAAAGCATTCAATTTCGCAGTAATCTTCTGTAGCCTTTTCGCTCCACTGTTTATATGACCTTGGATGTA CCAGATCAAAGCGAGCTTAATATATTTCGCAGTAATAGGGACTTTGATGCTGAAAATTTATCGTCGATAATGATGCTGAT CATATTTCCTGGTTTCTTCTGTTGAAGGCTAACTCTTGCATCTTCAGTTTGACAGTAGTTACCTCCCTTCTTGAGAAGTA TGGCATTGATCCTAAGCTAATTGGTCGTCTGGAAGTAGGCAGTGAGACTGTGATAGACAAAAGCAAATCCATCAAGACAT TCCTGATGCAGATCTTTGAGGTATCCTTTCAGTGTCAAACCACATGGATACTCTTTTGACAAAGTATAGTGACTTTCTTC ACCTTGTGATGGTATTTCAAAATAACCTGATTGAATTACCAGATTATAGATCTAATTATAGATATGGAGTTGTTCATACT TAGTTTCAAGTATTTAACATGCATGTCATGTCAAACATAGAGCACAGCTAAAGTAGCTCATAACCAACAGGGTTATTTAT AGTTGATCCTATACCCAGATCAGATACCAATCGTCACTATATTGTCATTAGGTAATGGTCCACTTGCTTAGATACCATAA CTATGTCTATATAGTCAATAATCAGAATGGTTTTAGTTCTGTAATATATATATATATATATATATATATATATATATATG ATCTGTTTCCATAGCTCCTGTATACAAGATTTACTTATCTGTCTGAATCAAGCAGAAATATGGAAATACTGATATCGAGG GCGTTGATTCAACTAATGCATGCTATGGAGGAACTGCTGCTTTGTTCAATTGTGTCAATTGGGTGGAGAGCAGCTCATGG GATGGACGCTATGGGCTTGTTGTCTGCACTGACAGTGCTGTAAGATCGTAAACATGTTTTAGACTCCCTTTTAAATGTGT GATTCTTTGAACAACTACAAGTTTCTCAACTCAAGCATGTGTAATTGATGAGTTCCTTTCGTAGGTCTATGCTGAAGGAC CTGCTCGGCCAACTGGCGGAGCTGCTGCTATTGCCATGCTAATTGGTCCTGACGCTCCCATTGCTTTTGAAAGCAAATTG AGAGCAAGTTATATGTCTCATGCCTATGATTTTTACAAGCCTAATCTTGCCAGTGAATATCCGGTACACTGTTCAGTCTC TTTTCATTTCTGCATCAGCAAACTTTTGAATCTGGGATCATCTATTTTGAAAGCTAGCTTCCTTTTTTCTGCCCATTAAT GTAATAATCAACACAATACCTGCAACTTTCTTTTGGTTTGAGAATGTTGGGGATAAACTTAACTCTTCTTCTATGCTTTA CTGTTGAGTATTGGCTCTACTGAGAACATTTTAGATTGCTAACACCAATATATCCATTTAATTTATGTGTTATAGGTTGT GGATGGGAAGCTTTCTCAAACTTGTTACCTTATGGCCCTTGATAATTGCTATAAAAGTCTCAGTCTGAAGTAAGCTTCTA CATCTAATATAATTCTTTTAAAATTTGGTTTATATGTTTTAATGAAGTGCGTTATGATTACTTGTTTGCAGATATGAGAA ATTCGAGGGAAAACCATTTTCTCTTGCTGATGCTGAATACTTTGTATTTCACTCCCCTTATAATAAGGTAGTTTAGGCTA TAATGGTCTCATGGATATCCTAACTCCGCATGACACTTAAGAACGTTATACACTTATATGTAATATGTTCTTTCTATATT TCATTCATGATCATATCTATCTTGGTTATGATATCTACATATGCATCTTTCAATCTGTCTTTTGATATTGTTCTTTAATG CTTTGAGCTTTGCAGCTCGTACAGAAAAGTTTTGCTCGTTTGGTGTTCAATGACTTCTTGAAGAATACCAGGTTCTTTTA ATTTTTCCATCCTCAAGAAACTTGTTTTTAATTCAACATTTTCATGTATTGATGTTTACAAGTTGATTATGATTACAGTT TTGTAGATGAAGCTGCCAAAGAAAAACTGGGACCTTTCGCGACATTATCTGGTGATGAGAGCTATCAAAGTCGTGATCTA GAAAAGGTCTGATTGTAGAGCTCTAAGTATACTTTGAGAAATAAGAACAAAAGTTGTGTTTGGTTTAGTCACTCATTTCT TTACGGTTTTTCCTTTGTGTTGGAGAGCAAAAGTGTGATTTCACATTTAATTCTATCTAAAAGGACAGTTTGAAACTTTT GTTGATGGTGTACAATATTCTTTTATTTACAGGCATCCCAGCAAGTTGCAAAGCCTCAATACGACGCCAAGGTGCAACCA ACCACTTTGTTGCCAAAACAAGTTGGCAACATGTACACTGCATCACTCTATGCAGCATTTGTTTCGCTTATTCACAACAA ACATAGCACATTGGTGAGTTTTCTAAATACTGAGTCAAATACTACCTCCGGTCCTATTTATAAGAACCAAATGAGATGTT CACTTTGGTCCTTTTTGTAAGAACCAACTTGGAGTTTGTGGTGCGTCAATTACTTTTTTATAAGAATACCCTTATTTAAT TGAACTTTATCTCTCTTTTCACTCTCCTTAACATGAATGATGCAAAAAATTGAGAAAAGTGAGTTAAGGGCAACTTTGGA AGTTAAATATTAATTGAGAAAAAATTTAATGCACTTAACTACATTAACTAGACTGTGTGAATTAGTTTTTTTGTTTTGTT TTGTTCTTATAAATAGGACCGGAGGTAGTATTAAGTTTCTTCACTACAAAGGTTTCATACTTTTCTGATAAAGATGCACA TTTTACAATTTTCAGGCAGGCAAGAGGGTGATACTATTCTCTTATGGAAGTGGCTTAACCGCCACAATGTTCTCTTTGCA ATTACGTGACGGGAAACATCCATTTAGCTTGTCAAACATTGCTACAGTGATGGATGTAGCTGGAAAATTGAAGTCAAGGA AGGAGGTATTTAAGTTTTAAGAGCCTTTCAGAAATGGAAGTATTCCACATATGCTGTCAGATTTAAGATTTACTTCAAAA ATAGTTTCATAACATCAAACCATTGTTTTAATGTTCAATAAGATGCTGAAAACAGAAACCTTTTCATGAGCTATACAATT GAATAGACTTTTGATGATTACAATTTTTATGCAGTTTCCTCCGGAGAAGTTTGTTGAAATCATGAAGCTAATGGAACATA GGTATGGCAGCAAGGAATATGTAACAAGCAAGGAAACTAGCCTTCTATCTTCTGGCACATTCTATCTCACTGAAGTTGAC AACATGTATAGGAGATTCTATGAACAGAAAACTAGTGAAAGCGCTTTGAGTGCCAATGGTCACTGATGTTAACATAGCCA ACGCGTGATGCCTAGAGGCCTGGAAGTCAAGTGTGGTTAGCATTTAGAAGGGTGATTTTTGTTTGCTAGTTTTGTAAGGG AAGAAAAATTAATTCGGAAGTTACCTGGTTGTCCATTCAAACATTTTACGATGTAGTTACTCTCAAGCTAAATAATTCCA AAACATTTTGATTTTTCTACTAGTTATGCTTTTTAAGATGGTGGAAGTGTGGAAGATTGAAAGTGGTCCTTTTGTTAACA TGAAATGCTTTACTATTAAGTGTTTACTGTTCACAATTTGAAGGAACTTATTTTGGGCAGGTACTTTTTTTAAGTAATCA AAATTAGTGTGCGGTTGATTATCATTTGGTAAATTTCAATTTGGCACCTTTAAGTTTTGTTCAGCCGAAATTTGCCAGAA GAGAGGAGGACATATGCACTTAAAAGGAAGTTGCAGATAAAAGCAGTTGAAAATCACTCCAAATACTTGGGTCTACTCAC CTTTGTGGGAAGATCAAAAAAATAGGTATTTTTTCTTTTATCCAAGATATAGTGTGAAAAAAGTTGGAAGGAGAATCTAT CATTGGCAGGGAGAGGAATTTTTGTTGTTGTTCAAGCAGTTCCAACTTATATTATGAGATGCTTTTCATGACCGGTTAGC CTATGCAACCATTTGGAGAGCTTGATTAGCAAGTTACCTGTTAGTTCATTTATTGG
CDS sequence (LotjaGi4g1v0218500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCAAGAATGTTGGAATCCTCGCCATCGACGTCTACTTCCCTTCCACCTGCGTTCAGCAGGAAGCACTTGAGGCTCA TGATGGTGCCAGTAAAGGGAAATATACTATTGGATTGGGACAGGACTGCATGGCGTTTTGCACAGATATAGAAGATGTCA TCTCAATGAGTTTGACAGTAGTTACCTCCCTTCTTGAGAAGTATGGCATTGATCCTAAGCTAATTGGTCGTCTGGAAGTA GGCAGTGAGACTGTGATAGACAAAAGCAAATCCATCAAGACATTCCTGATGCAGATCTTTGAGAAATATGGAAATACTGA TATCGAGGGCGTTGATTCAACTAATGCATGCTATGGAGGAACTGCTGCTTTGTTCAATTGTGTCAATTGGGTGGAGAGCA GCTCATGGGATGGACGCTATGGGCTTGTTGTCTGCACTGACAGTGCTGTCTATGCTGAAGGACCTGCTCGGCCAACTGGC GGAGCTGCTGCTATTGCCATGCTAATTGGTCCTGACGCTCCCATTGCTTTTGAAAGCAAATTGAGAGCAAGTTATATGTC TCATGCCTATGATTTTTACAAGCCTAATCTTGCCAGTGAATATCCGGTTGTGGATGGGAAGCTTTCTCAAACTTGTTACC TTATGGCCCTTGATAATTGCTATAAAAGTCTCAGTCTGAAATATGAGAAATTCGAGGGAAAACCATTTTCTCTTGCTGAT GCTGAATACTTTGTATTTCACTCCCCTTATAATAAGCTCGTACAGAAAAGTTTTGCTCGTTTGGTGTTCAATGACTTCTT GAAGAATACCAGTTTTGTAGATGAAGCTGCCAAAGAAAAACTGGGACCTTTCGCGACATTATCTGGTGATGAGAGCTATC AAAGTCGTGATCTAGAAAAGGCATCCCAGCAAGTTGCAAAGCCTCAATACGACGCCAAGGTGCAACCAACCACTTTGTTG CCAAAACAAGTTGGCAACATGTACACTGCATCACTCTATGCAGCATTTGTTTCGCTTATTCACAACAAACATAGCACATT GGCAGGCAAGAGGGTGATACTATTCTCTTATGGAAGTGGCTTAACCGCCACAATGTTCTCTTTGCAATTACGTGACGGGA AACATCCATTTAGCTTGTCAAACATTGCTACAGTGATGGATGTAGCTGGAAAATTGAAGTCAAGGAAGGAGTTTCCTCCG GAGAAGTTTGTTGAAATCATGAAGCTAATGGAACATAGGTATGGCAGCAAGGAATATGTAACAAGCAAGGAAACTAGCCT TCTATCTTCTGGCACATTCTATCTCACTGAAGTTGACAACATGTATAGGAGATTCTATGAACAGAAAACTAGTGAAAGCG CTTTGAGTGCCAATGGTCACTGA
Protein sequence (LotjaGi4g1v0218500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKNVGILAIDVYFPSTCVQQEALEAHDGASKGKYTIGLGQDCMAFCTDIEDVISMSLTVVTSLLEKYGIDPKLIGRLEV GSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTG GAAAIAMLIGPDAPIAFESKLRASYMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDNCYKSLSLKYEKFEGKPFSLAD AEYFVFHSPYNKLVQKSFARLVFNDFLKNTSFVDEAAKEKLGPFATLSGDESYQSRDLEKASQQVAKPQYDAKVQPTTLL PKQVGNMYTASLYAAFVSLIHNKHSTLAGKRVILFSYGSGLTATMFSLQLRDGKHPFSLSNIATVMDVAGKLKSRKEFPP EKFVEIMKLMEHRYGSKEYVTSKETSLLSSGTFYLTEVDNMYRRFYEQKTSESALSANGH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 450 | 450 | 0.0 | – | |
| PANTHER | 1 | 450 | 450 | 0.0 | – | |
| Gene3D | 1 | 450 | 450 | 9.3E-184 | ||
| Pfam | 2 | 174 | 173 | 9.0E-83 | ||
| TIGRFAM | 2 | 449 | 448 | 1.6E-216 | ||
| SUPERFAMILY | 4 | 172 | 169 | 2.88E-33 | ||
| CDD | 4 | 368 | 365 | 8.5607E-87 | – | |
| ProSitePatterns | 105 | 120 | 16 | - | ||
| Pfam | 175 | 449 | 275 | 3.4E-110 | ||
| SUPERFAMILY | 175 | 447 | 273 | 1.81E-64 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Hydroxymethylglutaryl-CoA synthase activity | Catalysis of the reaction: acetoacetyl-CoA + acetyl-CoA + H(2)O = (S)-3-hydroxy-3-methylglutaryl-CoA + CoA + H(+). | ||
| Biological process | Isoprenoid biosynthetic process | The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues. |
Expression pattern of LotjaGi4g1v0218500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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