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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0222200 |
| Transcript ID | LotjaGi4g1v0222200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SNF1-related kinase regulatory subunit gamma 1; TAIR: AT3G48530.1 SNF1-related protein kinase regulatory subunit gamma 1; Swiss-Prot: sp|Q8LBB2|KING1_ARATH SNF1-related protein kinase regulatory subunit gamma-1; TrEMBL-Plants: tr|V7CDU3|V7CDU3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0222200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:52710822..52715830) extracted from Lotus japonicus Gifu genome v1.2.
ATTTGCGATTTCTATGGGGAACATAACCATATCTGCGTTGACCACTACATAACACATCACACTCAACACGTGACCTCATC CCAGCCGTCCATTCAACGAACTAAACTCAAAGTGTGCAGATCCAACGGTGGAGATCTGAGGTGCAGGACACTGGTTTAGA ATGTGGAAGTAGGTTGAATGATCCAATTTTTTAGTTAATTTTGGAAATTGTTGCAGAAGAAAGATCATATAAGCTTGTTT GGGTTGCAGTTACAGAGAGAGAAAGTGATTGCAGTTATAGAGAGAGAAACGAGTGATCGCAATGGCAACGATGATGCAAG AGTGTCCACGAAGCCCAGAAGCGAAGCTAGGGATGCGAGTGGAGGATCTATGGGATGTGATGGAGCCACAGTTGAGTCCG AATGAGAAGCTTAACGCGTGCTTTGAAAGCATCCCTGTCTCTGCGTTTCCGTTACCTCCTTTGAATCAAGGTACTGAACT ACTCATTATGATGATTTCTTGTTGTTATTGTCTGTGCTCTTGATTTGTTGTTTCTCTGTTTCTGTTTGATTCTCAATATG CAATTTTGTTTGTTTGTTTAGAGATTGAAATCAAATCAGACGCTACTTTGGCGGAAGCTGTGAAGATACTGGCGCGTCAC AACGTTTTCAGCGCGCCTGTGGTGGATGTTGATGCTCCTGAAGATGCTAGTTGGATTGATAGATACATCGGGATAGTTGA GTTTGCTGGAATTGTTGTCTGGATTTTGCATCAGGTAAACTTGTTATGTCAGACATGAATTCAATTTGTTACTCTGCATG CATGTTTGGAATTCTTTCTATAATTGATTTTAAAACCAGAATCAATTACTTATGTTAGTAGATTATTTGGATTTCATATA ATTGATTCCGAGAAAAGCGAAATTGATCGAAAGATGCTAATATCACCAGTCGGATCCAGGACCCCGGGATCAAGGGTTCA AAATTTGCAAATGAACACATCGGTAAAAATATAATTAAAAACAATTTTAATATATTTATACATGAAAAATTATACAAGTC ATAGTTGTGCAAATAGGTGGGTCTTTGGGGGTAAATATGTGCAAAATTTAGTCTACTAGTATAATTTAAAATTTTTAGGG GTTCAAAAAAAAATTATATAGGAAATTATGTGCAATTTTTTTTTTCAGCGGGTTCATCTGAATCCCCTCACCTACACATA GCTTATTTGTATTCTATTTAATTTAAAACATGTTAATCTATTGCACACATATAGATTAACATGTAATGTTAAAATAAAAA AAAGGCTTAAATGCATTTGTTGCCCCTGATGTATCGCCAATGTGCAAAAGACAACCCGACTCTTTTTTTGTCGACGTTTG TACCCTCAATGTTTTGAGAAAGTATAGCGAATGCCCCTCCGTAGATTGACGTTAAAAAACTAACGGAGGGGCTGACGTGG ATTTTCTTTTTTTATTTTTCTTTTATTTCCTCAGATGCCACGTCATTAAATGAAAATAAAAACCTTGAAAATGTGTAGGA GAGGTTCGAACCCAGGACCTCATAGTGGCAAAACACACACATTACCAATTGAGCTACATGGACAACTGATATATTTGACA ACAGAATTTTATTTATTTCATATATCTTCTTCATCTTCTTCCTCATCATTCATCTTCTTCCCTTACCAATCCCTAACCCC AACGGCCCAACCCAGATTGAACCTCCTTCCTCCGCAGCCCCACCAGCCACCGTCGTCGCCACTATCCCGGCACGACGACA CCATGGTGGCGAACACCCTTCACGCCCCAACGATTTCCCTAACACTGTTTAGTGGTGCTACAATCCATCCCGATTGGGGA CTCCCTAATGGAAAAGGCACTTTCAAGCTGACCTAACAATGGCTTCTTAGCATCCAATGATGACAAAATCTGAGAACTAC CCTTCTTCCAATAAACACTACCATGCTGTTGTCCACTCCCAAAAACACCTGCAACCTTGGAAAAATCGAAATTTGATTTT GAAAGCTTCTGAAAGATGAGGTCAAGAGCTTCTACCCACATCAATATGGGTGAAACGATTCTGCCATTGCCAGAAGGATC TCTGCACACCCCATCTTTGGTTTTGTAATGGGGCAAGTCAGAATCGAAGTGCACAAGCTCAGATGCAACAATGGTGAGGT TAGAGTTTGATTGGTAAGGGAAGAAGAAAGAAGATGAAGAAGATATATGAAATAAATAAAATCCGGTTGTTAAATTAAAC AATTCTCCATGTAGCTCAACTGGTAATGTGTGTGTTTTGCCACTACGAGGTCCTGGGTTCGAACCTCTCCTACAAATTTT CAAGGTTTTTATTTTCATTTAATGACGTGGCATCTGAGGAAATAAAAGAAAAATAAAAAAAGAAAATCCACGTCAGCCCC TCCGTTAGTTTTTTAACGTCAATCTGACGGAGGGGCATTCGCTATACTTTCTCAAAACATTGAGGGTACAAACGTCGACA AAAAAAGAGTCGGGTTGTCTTTTGCACATTAGCGATACATCAGGGGCAACAAATGCATTTAAGCCTAAAAAAAATTTAGT GGGGGCAATTAGTACACTTCATATATATAATGTTCAATTATCAAAGATACTTGTGAGAGATTTATATATATATATATATA TATATATATATATATATAATGTTCAATGCGTACAAAAATATTGTGGGGCACTTGCCCCCATTAGCTTGTGAATAGATCCG TCCCTGATTACAGGTAAGTGTTTAAACCCCTAGGTCGAGAGTTCAATTCTTATGAGCCACACTTTTGGAGGAGACATTTG GACTCACCACACTAGATCAAAATTGTGAAAACAATTTAACACGCTAAAAAAGAAATCTATGTAATTGGTTATTTGTTAAT TTTTATTGGTAGAAGGATGATTTGATTGTTGCTATACATGTTAGTGTTTTCAAATTCAATACAACCATGGACTATTTGAA AGGGGAAATAATTAAAAGCTGATATGATACCTGTTGAAATTGAAGTAATTTTCTTTCTTGGATGCTTCATTTTCACACTA AGCTAATAAGACAATGTTCTTGACAGTCTGAACCTTCATCTCCTAGGAGTCCATCGACTCCAACCAGTGCAAGCGCGATT GCAGCTAAAGCCAATGGAATTACTTTTGCTCTAGAACTTGAAGCCTTAGGCCTTGGATCTGCTGCAACAACTGCAGGAAA CTTTTTTGAGGATCTCACTTCTTCTGAGCTTTATAAGAATACCAAGGTTTTGTACCCGCCAATTTGCAATATCAGCCTAA TTTTGAAAAGTTTCTGTTCCAGCACTTAGTTTGATTAAATTTTATTTGGTTATTTCAGGTTCGTGATATTTCAGGGACAT TCCGCTGGGCCCCGTTTCTTGCTTTAGAGAGATCAAATTCATTCCTAACCATGCTCTTGTTGCTTTCCAAGTACAAGATG AAGAGTGTTCCTGTGGTGGATTTAGGTGCTGGTAGAATTGGTAACATTATTACACAATCTGCAGTCATTCACATGTTGGC AGAATGCGTTGGGCTTCAGTGGTTTGAAAGTTGGGGAGCTAAGGAAATATCTGAAGTTGGTCTTCCCCTTGTGACACCAG ATCAAATCATCAAGGTGTGTACCAATCTTAAGTTGGAGTTCTGCATTAGCTGAGTGGAACTGCCATATATATTACTATCA AACCTTAACTAACAGTAAGCCATGCCATATAACAATTCAACTGCAATAATATTAAATAGGATTAGCACAGTGCTATGCTC TACTGTATCATAATGTAACCCCCGGACTGTTTGGATAAGCTTTTCTTTCCTTTGAGTCAATTTGGAACCGAGAAGCTACT CACAGATGTTTCTCCTCAGAATCTATTATGGTTTTAGAATCAATTGTAGAAGAATTTTCAAACGTCTATAATTTATGTTC TTCACTGCATTGAACCGTATCAAGTATGAATTTTACCGCATATCGAGAAAAAGCTTTCCTGCATTTCTTAAATTATATTA CATGTATGACAAATGTTCTGGGCTGGAATAAGTTATTTCATTACCCTCTTTGAAGTAGGCTTGTTGATATTGATGAACTT CACAGTGGATTATTTCCTTGTTTTCAGGTTTATGAGGACGAACCAGTCCTTCAAGCATTTAAACTGATGAGGAAAAAGAG GATTGGAGGGGTACCTGTAATCAGAAGAGGTGGCGCAACTGCAGTTGGTAATATAAGCTTGCGAGATGTTCAATTTTTGC TAACTGCCCCAGAAATTTATCATGACTATAGGTATGTCATCACATTTAATCAGATGCAGTGAGCTTGTTTAGGCTGCAAT TCATAAATATTATTTCTGTTGTTGTTCTACCTTCTTCCATTGCTTAACACTTGTTGGATTTTCACACTGTAACAGAACTG TTGCAGTAAAAGACTTCCTGACTGCTGTTAGAACCTACTTAGACAAGAACAAAAATGCATCCTCAATGTCAAGTGAATTT ATTACATGCAAAAAGGACTGCACAATCAAAGAGCTGATTCAATTGCTTGACCGTGAGAAGATTCACAGGGTCTATGTTGT GGATGATGATGGGAATCTGCAAGGACTAATCACACTGAGAGATATCATCTCAAGGCTGGTGCATGAGCCGCATGGCTATT TTGGTGATTTCTTTGATGGTGTTCTCCCTCTGCCTGCAAACAGCAGGGTTTAACTGGAAAGGCATCAAGGAAGATTAACC TGCTCTTGCAGCACCTTTTTGTTTTTTAATAAAATAATTTCTAATTAGAAAAAAAAGTGCAGGAAGATCTGTGTGCTTCC TTCTCTTCAGGGTTGAAGATGTGGAACTAGATCCTTCTAACGTGTAGGCAGTGTGCAAGTTGTTTGCACCCGTTTAATCA GTATTAGAGTGAGACTGTGTTGTAAATGTAAATAAATTATGGTGTAATTAGAAATTTTGTCAACTATTGGTTTTCTTTAT ATTCTGTCTTTGTTTTCTCCTATTGATTCTGAATTATAGAGAATGCACA
CDS sequence (LotjaGi4g1v0222200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAACGATGATGCAAGAGTGTCCACGAAGCCCAGAAGCGAAGCTAGGGATGCGAGTGGAGGATCTATGGGATGTGAT GGAGCCACAGTTGAGTCCGAATGAGAAGCTTAACGCGTGCTTTGAAAGCATCCCTGTCTCTGCGTTTCCGTTACCTCCTT TGAATCAAGAGATTGAAATCAAATCAGACGCTACTTTGGCGGAAGCTGTGAAGATACTGGCGCGTCACAACGTTTTCAGC GCGCCTGTGGTGGATGTTGATGCTCCTGAAGATGCTAGTTGGATTGATAGATACATCGGGATAGTTGAGTTTGCTGGAAT TGTTGTCTGGATTTTGCATCAGTCTGAACCTTCATCTCCTAGGAGTCCATCGACTCCAACCAGTGCAAGCGCGATTGCAG CTAAAGCCAATGGAATTACTTTTGCTCTAGAACTTGAAGCCTTAGGCCTTGGATCTGCTGCAACAACTGCAGGAAACTTT TTTGAGGATCTCACTTCTTCTGAGCTTTATAAGAATACCAAGGTTCGTGATATTTCAGGGACATTCCGCTGGGCCCCGTT TCTTGCTTTAGAGAGATCAAATTCATTCCTAACCATGCTCTTGTTGCTTTCCAAGTACAAGATGAAGAGTGTTCCTGTGG TGGATTTAGGTGCTGGTAGAATTGGTAACATTATTACACAATCTGCAGTCATTCACATGTTGGCAGAATGCGTTGGGCTT CAGTGGTTTGAAAGTTGGGGAGCTAAGGAAATATCTGAAGTTGGTCTTCCCCTTGTGACACCAGATCAAATCATCAAGGT TTATGAGGACGAACCAGTCCTTCAAGCATTTAAACTGATGAGGAAAAAGAGGATTGGAGGGGTACCTGTAATCAGAAGAG GTGGCGCAACTGCAGTTGGTAATATAAGCTTGCGAGATGTTCAATTTTTGCTAACTGCCCCAGAAATTTATCATGACTAT AGAACTGTTGCAGTAAAAGACTTCCTGACTGCTGTTAGAACCTACTTAGACAAGAACAAAAATGCATCCTCAATGTCAAG TGAATTTATTACATGCAAAAAGGACTGCACAATCAAAGAGCTGATTCAATTGCTTGACCGTGAGAAGATTCACAGGGTCT ATGTTGTGGATGATGATGGGAATCTGCAAGGACTAATCACACTGAGAGATATCATCTCAAGGCTGGTGCATGAGCCGCAT GGCTATTTTGGTGATTTCTTTGATGGTGTTCTCCCTCTGCCTGCAAACAGCAGGGTTTAA
Protein sequence (LotjaGi4g1v0222200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATMMQECPRSPEAKLGMRVEDLWDVMEPQLSPNEKLNACFESIPVSAFPLPPLNQEIEIKSDATLAEAVKILARHNVFS APVVDVDAPEDASWIDRYIGIVEFAGIVVWILHQSEPSSPRSPSTPTSASAIAAKANGITFALELEALGLGSAATTAGNF FEDLTSSELYKNTKVRDISGTFRWAPFLALERSNSFLTMLLLLSKYKMKSVPVVDLGAGRIGNIITQSAVIHMLAECVGL QWFESWGAKEISEVGLPLVTPDQIIKVYEDEPVLQAFKLMRKKRIGGVPVIRRGGATAVGNISLRDVQFLLTAPEIYHDY RTVAVKDFLTAVRTYLDKNKNASSMSSEFITCKKDCTIKELIQLLDREKIHRVYVVDDDGNLQGLITLRDIISRLVHEPH GYFGDFFDGVLPLPANSRV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 419 | 412 | 7.2E-213 | – | |
| PANTHER | 8 | 419 | 412 | 7.2E-213 | – | |
| SUPERFAMILY | 29 | 235 | 207 | 1.23E-19 | – | |
| ProSiteProfiles | 51 | 118 | 68 | 9.345 | ||
| SMART | 56 | 112 | 57 | 15.0 | ||
| Pfam | 58 | 103 | 46 | 0.0066 | ||
| CDD | 60 | 114 | 55 | 2.08739E-4 | – | |
| ProSiteProfiles | 181 | 240 | 60 | 7.148 | ||
| SMART | 186 | 235 | 50 | 7.5 | ||
| CDD | 200 | 307 | 108 | 2.26453E-7 | – | |
| Gene3D | 248 | 398 | 151 | 4.0E-31 | – | |
| ProSiteProfiles | 259 | 320 | 62 | 10.998 | ||
| CDD | 262 | 392 | 131 | 1.08684E-20 | – | |
| SUPERFAMILY | 262 | 405 | 144 | 6.95E-32 | – | |
| Pfam | 263 | 307 | 45 | 1.9E-6 | ||
| SMART | 263 | 312 | 50 | 2.0E-5 | ||
| ProSiteProfiles | 345 | 403 | 59 | 14.32 | ||
| Pfam | 345 | 396 | 52 | 1.3E-15 | ||
| SMART | 348 | 396 | 49 | 2.0E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0222200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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