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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0225600 |
| Transcript ID | LotjaGi4g1v0225600.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectate lyase; TAIR: AT5G63180.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q93Z25|PLY22_ARATH Probable pectate lyase 22; TrEMBL-Plants: tr|A0A1J7GII6|A0A1J7GII6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0225600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:53141700..53143615) extracted from Lotus japonicus Gifu genome v1.2.
AAAATGCCAACCTCCACTTCACTCTCTTCCCTCCTCTTCCTCTTCTCTCTCCTCACCCCAACCCTCATTTCCTCTTCCCA TCTTCAGGACCCTGAATTGGTTGTCCAAGAAGTAAATAGGTACTAATTCATTAAAGCCACACACACTTTGTACTTCATTC CATTTCTCCTCCACACATGAAATGTTTTGTACATTATACCAAATGTTTCAGTACATTGCACGGGTTTACATCTAGTTATA ACAAAATTTATGTTTTCATATAATTTTCTTATCTATGTTTTTATTTGAAATTTGGACAGTAAAATCAATGCCTCAGTGGC TAGGAGGAATTTGGGCTACCTATCATGTGGGAGTGGAAACCCCATTGATGATTGCTGGAGGTGTGACCCAAACTGGGAGA AGAACAGGCAGAGGCTAGCAGACTGTGCAATTGGCTTCGGCAAGAACGCCATTGGTGGAAGGAACGGTAAGATATACGTG GTCACCGACTCCGGCGACGACAACGCCGTCACTCCGAAGCCAGGGACATTGCGGTACGCGGTGATCCAGGATGAGCCACT ATGGATCATCTTCGCCAGAGACATGGTGATTCAGCTGAAGGAGGAGCTGATCATGAACTCGTTCAAGACCATTGATGGAA GAGGAGCGAGTGTGCACATCGCTGGTGGGCCCTGCATCACGGTTCAGTATGTGACCAACATCATCATCCATGGGATACAC ATACATGATTGCAAGCAGGGAGGGAATGCTATGGTGAGGGACTCCCCAAAGCACTTTGGGTGGAGGACTGTATCGGACGG TGATGGTGTGTCCATCTTTGGTGGGAGCCATGTCTGGGTGGACCATTGCTCTTTGTCTAACTGTAATGATGGGTTGATCG ACGCCATCCATGGTTCCACGGCGATTACCATCTCTAACAATTACATGACGCACCATGATAAGGTCATGCTGCTGGGCCAC AGCGATAGTTACACCCAAGACAAGAACATGCAGGTCACCATTGCTTTTAACCACTTTGGTGAAGGTCTTGTTCAAAGAAT GCCAAGGTAAAGTAAATTTCATTCATTCATTAATGCTAACCCGACAAATTGGATACACAGTGAAAAAACACAATAATACA TAATTACAGTGTGCAGGGACAACTTCTCTTAATTCTTATGGCTGTCGACTGAGAAAATTTTAATTTTGCAATGATTTTTT ATCATGTATTTAGTTAATTACCATTCCACTCAGATTTCAAATTGAGGTGCCCAAAACAAGAAAGGGAAAAAAGGGTAAGA GGAGGGTGGGTTGTCACTTGTCAACATGAAAAGCATAGATAAAAATTTATTAATTTTTATGGAAGTGACTGTGTTAATTT TGTCAACATTTCTAATTATTAACTAAAACTATGTGGGGTCAGTGAATTCTGAAATTGGAGGAAATTTTGTGATTTGCATG TGCAGGTGCAGGCATGGATATTTTCATGTGGTGAACAATGACTATACCCACTGGGAAATGTATGCTATTGGAGGAAGTGC TAACCCCACCATCAATAGCCAAGGCAATAGGTTTGTTGCACCTAATGACAGATTCAGCAAAGAGGTAAGCATTAATTACA GAATCATTCTTAAAGTTTAATTCAATCATTTTTCTTAATTAGTTAATAGTTATGAAAATTGTTTAATTATATGGTTTGAA TTTAATTTACATAGGTGACAAAGCATGAGGATGCACCAGAGAGTGAGTGGAAGGGGTGGAATTGGAGATCAGAAGGGGAT TTGTTGTTAAACGGTGCGTTTTTCACAGCAACTGGAGCTGGAGCCTCTGGTAGCTATGCAAGAGCTTCAAGCCTGAGTGC AAGACCATCAACCCTAGTGGGTACTATAACCACTGGTGCTGGTGCACTCAACTGTAGAAAAGGTTCTCATTGCTAG
CDS sequence (LotjaGi4g1v0225600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGATTCAGCTGAAGGAGGAGCTGATCATGAACTCGTTCAAGACCATTGATGGAAGAGGAGCGAGTGTGCACATCGC TGGTGGGCCCTGCATCACGGTTCAGTATGTGACCAACATCATCATCCATGGGATACACATACATGATTGCAAGCAGGGAG GGAATGCTATGGTGAGGGACTCCCCAAAGCACTTTGGGTGGAGGACTGTATCGGACGGTGATGGTGTGTCCATCTTTGGT GGGAGCCATGTCTGGGTGGACCATTGCTCTTTGTCTAACTGTAATGATGGGTTGATCGACGCCATCCATGGTTCCACGGC GATTACCATCTCTAACAATTACATGACGCACCATGATAAGGTCATGCTGCTGGGCCACAGCGATAGTTACACCCAAGACA AGAACATGCAGGTCACCATTGCTTTTAACCACTTTGGTGAAGGTCTTGTTCAAAGAATGCCAAGGTGCAGGCATGGATAT TTTCATGTGGTGAACAATGACTATACCCACTGGGAAATGTATGCTATTGGAGGAAGTGCTAACCCCACCATCAATAGCCA AGGCAATAGGTTTGTTGCACCTAATGACAGATTCAGCAAAGAGGTGACAAAGCATGAGGATGCACCAGAGAGTGAGTGGA AGGGGTGGAATTGGAGATCAGAAGGGGATTTGTTGTTAAACGGTGCGTTTTTCACAGCAACTGGAGCTGGAGCCTCTGGT AGCTATGCAAGAGCTTCAAGCCTGAGTGCAAGACCATCAACCCTAGTGGGTACTATAACCACTGGTGCTGGTGCACTCAA CTGTAGAAAAGGTTCTCATTGCTAG
Protein sequence (LotjaGi4g1v0225600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVIQLKEELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGIHIHDCKQGGNAMVRDSPKHFGWRTVSDGDGVSIFG GSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGY FHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPNDRFSKEVTKHEDAPESEWKGWNWRSEGDLLLNGAFFTATGAGASG SYARASSLSARPSTLVGTITTGAGALNCRKGSHC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 274 | 274 | 9.8E-183 | – | |
| Gene3D | 1 | 267 | 267 | 1.2E-89 | ||
| SUPERFAMILY | 1 | 269 | 269 | 5.5E-80 | ||
| SMART | 1 | 197 | 197 | 1.5E-105 | ||
| PANTHER | 1 | 274 | 274 | 9.8E-183 | – | |
| PRINTS | 8 | 24 | 17 | 1.1E-60 | ||
| Pfam | 11 | 191 | 181 | 4.8E-21 | ||
| PRINTS | 72 | 93 | 22 | 1.1E-60 | ||
| PRINTS | 152 | 171 | 20 | 1.1E-60 | ||
| PRINTS | 174 | 193 | 20 | 1.1E-60 | ||
| PRINTS | 216 | 240 | 25 | 1.1E-60 | ||
| PRINTS | 245 | 268 | 24 | 1.1E-60 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0225600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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