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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0225600 |
| Transcript ID | LotjaGi4g1v0225600.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectate lyase; TAIR: AT5G63180.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q93Z25|PLY22_ARATH Probable pectate lyase 22; TrEMBL-Plants: tr|A0A1J7GII6|A0A1J7GII6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0225600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:53141730..53143615) extracted from Lotus japonicus Gifu genome v1.2.
CTCCTCTTCCTCTTCTCTCTCCTCACCCCAACCCTCATTTCCTCTTCCCATCTTCAGGACCCTGAATTGGTTGTCCAAGA AGTAAATAGGTACTAATTCATTAAAGCCACACACACTTTGTACTTCATTCCATTTCTCCTCCACACATGAAATGTTTTGT ACATTATACCAAATGTTTCAGTACATTGCACGGGTTTACATCTAGTTATAACAAAATTTATGTTTTCATATAATTTTCTT ATCTATGTTTTTATTTGAAATTTGGACAGTAAAATCAATGCCTCAGTGGCTAGGAGGAATTTGGGCTACCTATCATGTGG GAGTGGAAACCCCATTGATGATTGCTGGAGGTGTGACCCAAACTGGGAGAAGAACAGGCAGAGGCTAGCAGACTGTGCAA TTGGCTTCGGCAAGAACGCCATTGGTGGAAGGAACGGTAAGATATACGTGGTCACCGACTCCGGCGACGACAACGCCGTC ACTCCGAAGCCAGGGACATTGCGGTACGCGGTGATCCAGGATGAGCCACTATGGATCATCTTCGCCAGAGACATGGTGAT TCAGCTGAAGGAGGAGCTGATCATGAACTCGTTCAAGACCATTGATGGAAGAGGAGCGAGTGTGCACATCGCTGGTGGGC CCTGCATCACGGTTCAGTATGTGACCAACATCATCATCCATGGGATACACATACATGATTGCAAGCAGGGAGGGAATGCT ATGGTGAGGGACTCCCCAAAGCACTTTGGGTGGAGGACTGTATCGGACGGTGATGGTGTGTCCATCTTTGGTGGGAGCCA TGTCTGGGTGGACCATTGCTCTTTGTCTAACTGTAATGATGGGTTGATCGACGCCATCCATGGTTCCACGGCGATTACCA TCTCTAACAATTACATGACGCACCATGATAAGGTCATGCTGCTGGGCCACAGCGATAGTTACACCCAAGACAAGAACATG CAGGTCACCATTGCTTTTAACCACTTTGGTGAAGGTCTTGTTCAAAGAATGCCAAGGTAAAGTAAATTTCATTCATTCAT TAATGCTAACCCGACAAATTGGATACACAGTGAAAAAACACAATAATACATAATTACAGTGTGCAGGGACAACTTCTCTT AATTCTTATGGCTGTCGACTGAGAAAATTTTAATTTTGCAATGATTTTTTATCATGTATTTAGTTAATTACCATTCCACT CAGATTTCAAATTGAGGTGCCCAAAACAAGAAAGGGAAAAAAGGGTAAGAGGAGGGTGGGTTGTCACTTGTCAACATGAA AAGCATAGATAAAAATTTATTAATTTTTATGGAAGTGACTGTGTTAATTTTGTCAACATTTCTAATTATTAACTAAAACT ATGTGGGGTCAGTGAATTCTGAAATTGGAGGAAATTTTGTGATTTGCATGTGCAGGTGCAGGCATGGATATTTTCATGTG GTGAACAATGACTATACCCACTGGGAAATGTATGCTATTGGAGGAAGTGCTAACCCCACCATCAATAGCCAAGGCAATAG GTTTGTTGCACCTAATGACAGATTCAGCAAAGAGGTAAGCATTAATTACAGAATCATTCTTAAAGTTTAATTCAATCATT TTTCTTAATTAGTTAATAGTTATGAAAATTGTTTAATTATATGGTTTGAATTTAATTTACATAGGTGACAAAGCATGAGG ATGCACCAGAGAGTGAGTGGAAGGGGTGGAATTGGAGATCAGAAGGGGATTTGTTGTTAAACGGTGCGTTTTTCACAGCA ACTGGAGCTGGAGCCTCTGGTAGCTATGCAAGAGCTTCAAGCCTGAGTGCAAGACCATCAACCCTAGTGGGTACTATAAC CACTGGTGCTGGTGCACTCAACTGTAGAAAAGGTTCTCATTGCTAG
CDS sequence (LotjaGi4g1v0225600.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGATTCAGCTGAAGGAGGAGCTGATCATGAACTCGTTCAAGACCATTGATGGAAGAGGAGCGAGTGTGCACATCGC TGGTGGGCCCTGCATCACGGTTCAGTATGTGACCAACATCATCATCCATGGGATACACATACATGATTGCAAGCAGGGAG GGAATGCTATGGTGAGGGACTCCCCAAAGCACTTTGGGTGGAGGACTGTATCGGACGGTGATGGTGTGTCCATCTTTGGT GGGAGCCATGTCTGGGTGGACCATTGCTCTTTGTCTAACTGTAATGATGGGTTGATCGACGCCATCCATGGTTCCACGGC GATTACCATCTCTAACAATTACATGACGCACCATGATAAGGTCATGCTGCTGGGCCACAGCGATAGTTACACCCAAGACA AGAACATGCAGGTCACCATTGCTTTTAACCACTTTGGTGAAGGTCTTGTTCAAAGAATGCCAAGTGCTAACCCCACCATC AATAGCCAAGGCAATAGGTTTGTTGCACCTAATGACAGATTCAGCAAAGAGGTGACAAAGCATGAGGATGCACCAGAGAG TGAGTGGAAGGGGTGGAATTGGAGATCAGAAGGGGATTTGTTGTTAAACGGTGCGTTTTTCACAGCAACTGGAGCTGGAG CCTCTGGTAGCTATGCAAGAGCTTCAAGCCTGAGTGCAAGACCATCAACCCTAGTGGGTACTATAACCACTGGTGCTGGT GCACTCAACTGTAGAAAAGGTTCTCATTGCTAG
Protein sequence (LotjaGi4g1v0225600.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVIQLKEELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGIHIHDCKQGGNAMVRDSPKHFGWRTVSDGDGVSIFG GSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPSANPTI NSQGNRFVAPNDRFSKEVTKHEDAPESEWKGWNWRSEGDLLLNGAFFTATGAGASGSYARASSLSARPSTLVGTITTGAG ALNCRKGSHC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SMART | 1 | 173 | 173 | 4.9E-72 | ||
| PANTHER | 1 | 155 | 155 | 3.3E-152 | – | |
| PANTHER | 1 | 155 | 155 | 3.3E-152 | – | |
| Gene3D | 1 | 243 | 243 | 8.9E-70 | ||
| SUPERFAMILY | 1 | 245 | 245 | 1.38E-63 | ||
| PRINTS | 8 | 24 | 17 | 3.8E-23 | ||
| Pfam | 10 | 154 | 145 | 4.5E-13 | ||
| PANTHER | 155 | 250 | 96 | 3.3E-152 | – | |
| PANTHER | 155 | 250 | 96 | 3.3E-152 | – | |
| PRINTS | 192 | 216 | 25 | 3.8E-23 | ||
| PRINTS | 221 | 244 | 24 | 3.8E-23 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0225600.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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