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LotjaGi4g1v0227400.3

Overview

Field Value
Gene ID LotjaGi4g1v0227400
Transcript ID LotjaGi4g1v0227400.3
Related isoforms 6
Lotus japonicus genome version Gifu v1.2
Description Protein kinase; TAIR: AT4G24740.3 LAMMER-type protein kinase AFC2; Swiss-Prot: sp|P51567|AFC2_ARATH Serine/threonine-protein kinase AFC2; TrEMBL-Plants: tr|V7CDP1|V7CDP1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0227400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:53734932..53737985) extracted from Lotus japonicus Gifu genome v1.2.

ATGGAGATGGAACGCGTCATCGAATTCCCCCACACTCACATGGATCGCCGCCCCAGAAAGAGAGCGAGGTTAGGCTGGGA CGTCGCTGAGGCCCCCAAGGTAAAACTCTTCTCCGCCTCTTGAAATCTCAGATCTGACATTTTTCCTTTGTTTTTCGTTG GTTTTTATTTTTTCTGGTTGTAGATCTGGTGGAAATTATGTAAATTAGGTATGTTTGGTTCAGGTAACGTTGTTCTTTTG TTTCCCAGGATTTTTGTGATGAATTTTTGTCGATTTGTTAGGTTTTGGTGTTTTTAATCAATAATATTCATCTGGGTATG CGTCAATTACTCGATCTGATTTTTGGTACTTGACAATTTTTATATTTTTTGTATGATTTCGTCTTGGTGGTATATTCTTA TGCAGTTTTATCTCTAATTTCTTTGTGAATTTTTCATGTATGATAAAGCTTGATATATCAATATTAATATCAAACGTTTT GATGTTATCATCTGTAAAATTGATGAGTTGTTACACAAGATATAATTTCTGAGATATCATCTTAATTGAATTTAAAGAAT GAATTATCTGTCTCTGCTATTTTTATGTTAATTATGTTATGTATAATTGTTTTTTAACTCAAATTTTGTGTGTATGTTCT TGATGATTAATTTTGTGTGTGCTAGAATATGCTTATTCATTGCACTCATGTGCTTTTATTAATTGTAAGTTTGTAACAAA TTGAGATGGTAGAGAGGGCCTTGGTAGGGCTCATGATAGTGGGGTAGAATATTGTTTTTTATTTTTAACCGAGTGGTGCA TGAATGGATATGGCTGTGTGTAGGCTCAGGTAGGATTGTTTTGTGGACAAGAGGTTGGGAATATTTCTGGCTATGCTCCT TCAAGGGGTCCATCCGAACATACCAATAGTTCTCTATTTGCTAAGGGAGTTGCTCGAAATGGTTCTCCCCCTTGGCGAGA TGATGACAAAGATGGGCATTACATGTTTGCAGTTGGAGAAAATTTAACATCTCGCTGTAATTACACTTTACCATCATTGA GATATTTATATTCTTATATGTTATGGCCAAACACTGGTTTATTCTTTCCTGATAAACCTGCAATTATTTGCTTGCAAAAC TCATGCATCTTCACTCGCTTAATTTTGTTAATTTGGGTGTAACACATTAAGTGATCCATCTCAGTTGTAGGAATTTTATT ACAGAAGCTTATTTTATGTGTCCATAGGTATAAAATCATTTGGATATTGGCAAGGCTTGCATTGCTTACACGTGTTCTTT ATAATGTTGCAGATAAGATCCATTGCAAAATGGGTGAAGGAACCTTTGGACAGGTCTTAGAATGCTGGGACAGAGAAAGG AAGGAAATGGTTGCCATTAAAATTGTTCGTGGTATAAAGAAATATCGAGAGGCCGCCATGATAGAAATTGAGATGTTGCA ACAGCTTGGGAAACATGACAAAGGAGGCAGCCGGTAAGAGAAGTTTTAGCTTTATTTTACTAGTACTATGTAAAAAACTT TTATTTCCATTGCATTGGTTAAATTTGCTTATTCCTTGCAGTTGTGTTCAAATACGGAACTGGTTTGACTATCGTAATCA TATCTGTATTGTAAGTATTTGATTGATTTGAGATGGATTGATTTCCCCAATATACAAATAACGTGGGGGTTAAAGTATCG GTGAATTTAAATGGTTTTAACAGGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGC TCATTTCCCATTGATCTTGTCCGTGAGATTGGCAGACAACTATTGGAATGTATTGCATGTGTGTAGTATTACTTGAACTA GTTTCCTTTAAGCCATTTCTTCTATATATTTCACTTTATATCATGTAAATTATGCTATCATAAGCTGATAATATTGCACA CCATCTCATTTGCATCACATCTTTAGGAGTTAGTTTTGATATAATAAAATCATCAGCATGTGTTGTTTTTGTCACTGGGG TAGCTTCTAATTGTTTTCTTCATTTGTAAATCTGCAGTCATGCATGACTTGTGCATGATCCATACTGACCTGAAGCCTGA GAACATACTGCTAGTTTCACCAGATTATGTCAAAGTTCCTGACTACAAGGTATGTTTCCTGTTTGCACATGTGGCTATTT GTTTTATAGACTCGTGCACTCTTTGTTTTTATAATTTTTCCTACTCATGGTGCACCTGTGATACAGGTGAGAAGAGAAAA ATCTTAAATTCTAGACACATGTCTGTTTTATGTCTGTTAAGAGAATGTAATTGACATTCAAACTGCACTATATAAAATAC TAATTTGAAATAAAAGTTTCTGTTATCAGTGGTTGTTGGTAGTTTTTTTTATGACCATTGTCTCCTTTTTTCTTATTCGC AGAACACACTTAGGATCATGTTTGTGTCCTTTATTTTTTAGTTTGTTTTGATGTGAGAAGTAAAAATTAAACCAATATGT AGCATTGCTCCTTTTTTTTTCGAAGGCATTTATTGATTCAGTTTCTGACATTCATTTTCTTGTTGAACAGAATTCATCTA GATCACCAAATTCCTATTTCAAGAGAGTGCCCAAGTCAAGTGCTATAAAGGTTATTGACTTTGGCAGTACCACTTATAAG CGAGAAGATCAAAGTTACATTGTATCAACTCGTCATTATAGAGCACCTGAAGTCATCCTTGGTATATACAAATTCTATGG AAAGAAAAGCTACATTCTAGTTTCATGATGAATTATATGATACTGGAAATATCAACTGTATTGTTGATTTTGGCAATGGT TGTGTAGGACTTGGCTGGAGTTATCCATGTGATACATGGAGCGTGGGATGTATACTGGTTGAACTATGCACGGTATTTTT TACTCTTAGAAAACCTTGTCTCAGCACACTCATCCAACTTTTGAAGTTCTGACCTGTGAGCATCTGTTGTAGGGCGAAGC TTTGTTTCAGACTCATGAGAATTTAGAGCACCTTGCCATGATGGAGAGGGTACTTGGTCCATTACCGCAGCACATGTTGA AGAGAGTCGAGTGA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0227400.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGATGGAACGCGTCATCGAATTCCCCCACACTCACATGGATCGCCGCCCCAGAAAGAGAGCGAGGTTAGGCTGGGA CGTCGCTGAGGCCCCCAAGGCTCAGGTAGGATTGTTTTGTGGACAAGAGGTTGGGAATATTTCTGGCTATGCTCCTTCAA GGGGTCCATCCGAACATACCAATAGTTCTCTATTTGCTAAGGGAGTTGCTCGAAATGGTTCTCCCCCTTGGCGAGATGAT GACAAAGATGGGCATTACATGTTTGCAGTTGGAGAAAATTTAACATCTCGCTATAAGATCCATTGCAAAATGGGTGAAGG AACCTTTGGACAGGTCTTAGAATGCTGGGACAGAGAAAGGAAGGAAATGGTTGCCATTAAAATTGTTCGTGGTATAAAGA AATATCGAGAGGCCGCCATGATAGAAATTGAGATGTTGCAACAGCTTGGGAAACATGACAAAGGAGGCAGCCGTTGTGTT CAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCT TCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAGACAACTATTGGAATGTATTGCATTCA TGCATGACTTGTGCATGATCCATACTGACCTGAAGCCTGAGAACATACTGCTAGTTTCACCAGATTATGTCAAAGTTCCT GACTACAAGAATTCATCTAGATCACCAAATTCCTATTTCAAGAGAGTGCCCAAGTCAAGTGCTATAAAGGTTATTGACTT TGGCAGTACCACTTATAAGCGAGAAGATCAAAGTTACATTGTATCAACTCGTCATTATAGAGCACCTGAAGTCATCCTTG GACTTGGCTGGAGTTATCCATGTGATACATGGAGCGTGGGATGTATACTGGTTGAACTATGCACGGGCGAAGCTTTGTTT CAGACTCATGAGAATTTAGAGCACCTTGCCATGATGGAGAGGGTACTTGGTCCATTACCGCAGCACATGTTGAAGAGAGT CGAGTGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0227400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEMERVIEFPHTHMDRRPRKRARLGWDVAEAPKAQVGLFCGQEVGNISGYAPSRGPSEHTNSSLFAKGVARNGSPPWRDD DKDGHYMFAVGENLTSRYKIHCKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEMLQQLGKHDKGGSRCV QIRNWFDYRNHICIVFEKLGPSLYDFLRKNNYRSFPIDLVREIGRQLLECIAFMHDLCMIHTDLKPENILLVSPDYVKVP DYKNSSRSPNSYFKRVPKSSAIKVIDFGSTTYKREDQSYIVSTRHYRAPEVILGLGWSYPCDTWSVGCILVELCTGEALF QTHENLEHLAMMERVLGPLPQHMLKRVE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR45646:SF16
1 347 347 6.9E-228 –
PANTHER
PTHR45646
1 347 347 6.9E-228 –
Gene3D
G3DSA:3.30.200.20
80 178 99 2.5E-98 –
CDD
cd14134
85 346 262 4.99152E-175 –
SUPERFAMILY
SSF56112
85 346 262 6.88E-68
IPR011009
ProSiteProfiles
PS50011
98 348 251 31.778
IPR000719
SMART
SM00220
98 347 250 1.9E-48
IPR000719
Pfam
PF00069
98 335 238 6.8E-42
IPR000719
Gene3D
G3DSA:1.10.510.10
154 347 194 2.5E-98 –
ProSitePatterns
PS00108
219 231 13 -
IPR008271

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004672
Molecular function Protein kinase activity Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006468
Biological process Protein phosphorylation The process of introducing a phosphate group on to a protein.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0227400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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