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LotjaGi4g1v0227400.6

Overview

Field Value
Gene ID LotjaGi4g1v0227400
Transcript ID LotjaGi4g1v0227400.6
Related isoforms 6
Lotus japonicus genome version Gifu v1.2
Description Protein kinase; TAIR: AT4G24740.2 LAMMER-type protein kinase AFC2; Swiss-Prot: sp|P51567|AFC2_ARATH Serine/threonine-protein kinase AFC2; TrEMBL-Plants: tr|A0A0S3R608|A0A0S3R608_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0227400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:53736241..53738407) extracted from Lotus japonicus Gifu genome v1.2.

ATGGGTGAAGGAACCTTTGGACAGGTCTTAGAATGCTGGGACAGAGAAAGGAAGGAAATGGTTGCCATTAAAATTGTTCG TGGTATAAAGAAATATCGAGAGGCCGCCATGATAGAAATTGAGATGTTGCAACAGCTTGGGAAACATGACAAAGGAGGCA GCCGGTAAGAGAAGTTTTAGCTTTATTTTACTAGTACTATGTAAAAAACTTTTATTTCCATTGCATTGGTTAAATTTGCT TATTCCTTGCAGTTGTGTTCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTGTAAGTATTTGATTGATTT GAGATGGATTGATTTCCCCAATATACAAATAACGTGGGGGTTAAAGTATCGGTGAATTTAAATGGTTTTAACAGGTGTTT GAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGAT TGGCAGACAACTATTGGAATGTATTGCATGTGTGTAGTATTACTTGAACTAGTTTCCTTTAAGCCATTTCTTCTATATAT TTCACTTTATATCATGTAAATTATGCTATCATAAGCTGATAATATTGCACACCATCTCATTTGCATCACATCTTTAGGAG TTAGTTTTGATATAATAAAATCATCAGCATGTGTTGTTTTTGTCACTGGGGTAGCTTCTAATTGTTTTCTTCATTTGTAA ATCTGCAGTCATGCATGACTTGTGCATGATCCATACTGACCTGAAGCCTGAGAACATACTGCTAGTTTCACCAGATTATG TCAAAGTTCCTGACTACAAGGTATGTTTCCTGTTTGCACATGTGGCTATTTGTTTTATAGACTCGTGCACTCTTTGTTTT TATAATTTTTCCTACTCATGGTGCACCTGTGATACAGGTGAGAAGAGAAAAATCTTAAATTCTAGACACATGTCTGTTTT ATGTCTGTTAAGAGAATGTAATTGACATTCAAACTGCACTATATAAAATACTAATTTGAAATAAAAGTTTCTGTTATCAG TGGTTGTTGGTAGTTTTTTTTATGACCATTGTCTCCTTTTTTCTTATTCGCAGAACACACTTAGGATCATGTTTGTGTCC TTTATTTTTTAGTTTGTTTTGATGTGAGAAGTAAAAATTAAACCAATATGTAGCATTGCTCCTTTTTTTTTCGAAGGCAT TTATTGATTCAGTTTCTGACATTCATTTTCTTGTTGAACAGAATTCATCTAGATCACCAAATTCCTATTTCAAGAGAGTG CCCAAGTCAAGTGCTATAAAGGTTATTGACTTTGGCAGTACCACTTATAAGCGAGAAGATCAAAGTTACATTGTATCAAC TCGTCATTATAGAGCACCTGAAGTCATCCTTGGTATATACAAATTCTATGGAAAGAAAAGCTACATTCTAGTTTCATGAT GAATTATATGATACTGGAAATATCAACTGTATTGTTGATTTTGGCAATGGTTGTGTAGGACTTGGCTGGAGTTATCCATG TGATACATGGAGCGTGGGATGTATACTGGTTGAACTATGCACGGTATTTTTTACTCTTAGAAAACCTTGTCTCAGCACAC TCATCCAACTTTTGAAGTTCTGACCTGTGAGCATCTGTTGTAGGGCGAAGCTTTGTTTCAGACTCATGAGAATTTAGAGC ACCTTGCCATGATGGAGAGGGTACTTGGTCCATTACCGCAGCACATGTTGAAGAGAGTCGAGTGAGTAACTTACGATTGG AACTTGTATCAATTTGTTGATTTTCAAACATGACAAATGAGTATGTATTTGCTTGTGCATGTTCAGCCGACATTCTGAGA AATATGTTAGAAGGGGTAGATTAGACTGGCCTGAGGGCGCGACCTCAAGGGATAGTATTAAAGCTGTAACAAAGCTTCCC AGGCTACAGGTTTGTTTAGTTACTTTTTGCTTCTTGATTTACAGCATAAAACAAGTTAAATGGTTTTTATTGACTTTTCT TTGTAATTTTTGTCAAACAGAACCTTATAATGCAGCATGTTGATCATTCAGCTGGTGATCTCATACATCTCTTGCAAGGG TTACTTAGATATGACCCCTCTGAGAGACTTACAGCTAAGGAAGCTCTGAATCATTCTTTCTTCATGAGAGATAATCTTCG GAGATAA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0227400.6) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGTGAAGGAACCTTTGGACAGGTCTTAGAATGCTGGGACAGAGAAAGGAAGGAAATGGTTGCCATTAAAATTGTTCG TGGTATAAAGAAATATCGAGAGGCCGCCATGATAGAAATTGAGATGTTGCAACAGCTTGGGAAACATGACAAAGGAGGCA GCCGTTGTGTTCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTGTGTTTGAGAAACTTGGACCAAGCTTA TACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAGACAACTATTGGAATG TATTGCATTCATGCATGACTTGTGCATGATCCATACTGACCTGAAGCCTGAGAACATACTGCTAGTTTCACCAGATTATG TCAAAGTTCCTGACTACAAGAATTCATCTAGATCACCAAATTCCTATTTCAAGAGAGTGCCCAAGTCAAGTGCTATAAAG GTTATTGACTTTGGCAGTACCACTTATAAGCGAGAAGATCAAAGTTACATTGTATCAACTCGTCATTATAGAGCACCTGA AGTCATCCTTGGACTTGGCTGGAGTTATCCATGTGATACATGGAGCGTGGGATGTATACTGGTTGAACTATGCACGGGCG AAGCTTTGTTTCAGACTCATGAGAATTTAGAGCACCTTGCCATGATGGAGAGGGTACTTGGTCCATTACCGCAGCACATG TTGAAGAGAGTCGACCGACATTCTGAGAAATATGTTAGAAGGGGTAGATTAGACTGGCCTGAGGGCGCGACCTCAAGGGA TAGTATTAAAGCTGTAACAAAGCTTCCCAGGCTACAGAACCTTATAATGCAGCATGTTGATCATTCAGCTGGTGATCTCA TACATCTCTTGCAAGGGTTACTTAGATATGACCCCTCTGAGAGACTTACAGCTAAGGAAGCTCTGAATCATTCTTTCTTC ATGAGAGATAATCTTCGGAGATAA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0227400.6) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEMLQQLGKHDKGGSRCVQIRNWFDYRNHICIVFEKLGPSL YDFLRKNNYRSFPIDLVREIGRQLLECIAFMHDLCMIHTDLKPENILLVSPDYVKVPDYKNSSRSPNSYFKRVPKSSAIK VIDFGSTTYKREDQSYIVSTRHYRAPEVILGLGWSYPCDTWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPLPQHM LKRVDRHSEKYVRRGRLDWPEGATSRDSIKAVTKLPRLQNLIMQHVDHSAGDLIHLLQGLLRYDPSERLTAKEALNHSFF MRDNLRR
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR45646
1 325 325 2.6E-219 –
Pfam
PF00069
1 320 320 7.7E-49
IPR000719
ProSiteProfiles
PS50011
1 320 320 36.372
IPR000719
CDD
cd14134
1 320 320 0.0 –
PANTHER
PTHR45646:SF16
1 325 325 2.6E-219 –
Gene3D
G3DSA:3.30.200.20
1 75 75 1.2E-106 –
SMART
SM00220
2 320 319 1.2E-67
IPR000719
SUPERFAMILY
SSF56112
2 323 322 6.54E-74
IPR011009
Gene3D
G3DSA:1.10.510.10
49 319 271 1.2E-106 –
ProSitePatterns
PS00108
116 128 13 -
IPR008271

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004672
Molecular function Protein kinase activity Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006468
Biological process Protein phosphorylation The process of introducing a phosphate group on to a protein.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0227400.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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