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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0228600 |
| Transcript ID | LotjaGi4g1v0228600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Leucine-rich repeat (LRR) family protein; TAIR: AT5G05850.1 plant intracellular ras group-related LRR 1; Swiss-Prot: sp|Q9FFJ3|PIRL1_ARATH Plant intracellular Ras-group-related LRR protein 1; TrEMBL-Plants: tr|A0A1J7IGG5|A0A1J7IGG5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0228600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:53835081..53838036) extracted from Lotus japonicus Gifu genome v1.2.
ATGACTCATTCCTAATGTCTCGTTTCATTGCATGGTTGTTATACTTTATCGCTCGCACCTACTTAACATCAACGCTATCA TATCTTCAAATTTCCATTTTGTTTCACACCTCAACAATCTAACTAACTAATCAATCAACCACCATTCTCACCGGTGATCC ATAACCGTAAAACTAACTTCGCCGCCGCACTCACCACCGTTCACCGCCATGGATCCCAACCCAGGAACCTTCCCCATTCT CTCCTACGTCATGTCCCGCCTCCCTTCCTTCAGCCCCAGCACCACCACCACCACCACTTCCACTTCCAATTCCCAATCCG ACGTCGAACAACCGCTATCACCACCCTCAGACCCTTCGTCCTCTTCCTCAATCATCGGCCAAATGCCGAATCTGACAGAC CCGAAGCTTCTGGCGGCAATGACCCGCGCAATCTCCGACGTCTCGCAGGCCAGAGCCGTCCTGAAACTGATCGGCGAGCG GCCAACCCACGAGGAGGTCGACGACTCCAGGGCCAAACTGGCGGACCTCGACGCCCATCTTTCCCGCCAGATGGAAGAGA TCGTCGGCCTCCCCAAGCCGCCCGAGGTAAACGACGACCAATGGCGGGTTCACCTCGCCGAGAGGGAGACGCAGTGCAGG GATTCCGTGGAGAAGGATAGGCGCGTGTTCAAGTCGCTGTTGCAGCTGGAGGAGATGCATGACGCTTACGCGAAGCTTCT CAAGGACGCGGAAAAGCGGCTTGTGAAGATTTACGAGGGCGGCGAGGATGAGAACGACGGCGACAATGATGGTGGCGCTG CGGCGGTGGCTGTGGAAGAGGAACAGGTTGCGGGGATGCTGCAGGAGGCTTGTGGGAAAGGGGTGGAGCATGTGGATCTT TCCGGGCAGCACCTGAGGAAGCTTCCTGAAGCATTTGGCCGCATTATCCCTTCCTTGGTGGTGCTCAATCTCTCCACCAA TCAGCTTTCGGTAACCTGATCACTCTACCTGCATTTGATGCGTATGATTAGTTTTTGATTGATTCTATTCATGGTAGATT AATTAAGATTAATTGGTTCTTTTGTTGATTGATTGCGTGTTTGAAAATCCTTCTACAATGGATTCTGAAATCAAAATCAA TTTTGGTGAGGAGCTACAGTGATTAGCTTCTCTATGCCAGAATTGATTCTGATGAAGGAAAAACTGATCTAAACATGTTG TTATAAGCTTGATTGATAAGAGATTTATTGGGAATTGTTTTTATGTGATTTATTTGTTTATACATATGAGATCAATTCAT TGCTGAATATATAATAGGTGATTCCTGACTCAATAAGTGGATTGCAAAATCTTGAGGAGCTTAATGTGTCTACAAATGTT TTGGAATCACTGCCAGATTCAATTGGCTTGTTACAGAAGTTGAAAATCCTCAATGTCTCTGGAAATAAGCTGAGTGCCCT TCCTGATTCAATCAGTCAGTGCAGGTATGTGCCTGGAAAACTCTTCTATAGAAGAATTCTTAAGAGCAGCACTTTCTATT ATTGTCAGTGCTTGTCAATTTGGGGAAAAACTGTGGTTTGACATCCTTATAGAATACTAACATTAGGATTAGTTTAAAGA AGATGGTTAACTTTGTAACTACATCAGAATAGGGAGTCTCATACATGTCTGTTTTGAAACTCAGACTTAAGATTAGTGAA ACTATGTAAGTGGGAAAAAATTGTACAATTGCATAACCAGATGAGCAAAGCTGTTTGTGTTTAAAATTTGTTGAGTCTCA ACAAAATTCATAGATATCTACATCATTTAAGAATAATTTAATCCTACATCTTGCAAAATATACCTTGAAGGTGTCCAAAT ATTTGAAATAATATCTTACTGACCATTTCAAACTTATTTTATTTCTGCACATACATCCAAGCTATGAATGATTAAAATAT AATTGATGGAACCACCCATGTATTAAATGATCAGGTCTTTGGTGGAGCTAGATGCTAGCTTTAACAGTCTGCAATATTTG CCAACAAACATTGGATTTGAGTTACAGAGTTTAAAGAAGCTCTTGATTCAGCTAAACAAGATACGATCCCTTCCCTCATC TATTTGTGAGATGAAGTCCCTCCGCTATCTGGATGCTCACTTCAATGAGCTACATGGGCTTCCTAATGCCATTGGGAAAT TGAGTCATCTTGAAGTTCTTAACCTGAGCAGCAACTTCAGTGATCTTCAAGAACTTCCAGAAACATTTGGTGATCTGAGT AGCCTCAGGGAATTGGATCTCAGCAACAATCAAATTCATGCACTTCCTGATACATTTGGCCGCCTTGATAATTTGACCAA GCTGAACTTGGAGCAGAACCCTCTTGAAGTGCCACCTATGGAGATTGTAAATCATGGTGTCCAAGCCATAAAGTCATTCA TGGCCAAGAGGTGGATTGAAATATTGGCAGAGGAAGATAGGAAACACACACAGGAATTTCCAGAAGAAGGGCAGAATGGG TGGCTAACTCGAAGTACCTCCTGGTTAAAGAATGTTTCTGTAAATGTAACTGAGTATCTCGAAACTACCGTTATGTCCCC CAAAGCTCCCAGAACTCCCAGAGATGCTTATCTTAATCAGCAGCTATGAGCCTATGAAGTGGTGATCCATAAAATATTGC GGATTGTGTTGACTCAAAAGATCAGCAACATGGACCATCTGCAACTATTTTCTCTGCAGCTCCCTGCCGCAAATTCTAAG TCATTGATTCTTAGATAGTATCTGGCCCTGCCTCTCCTTTTTTGCTACTTGTTACTGCATATTACCTAACAGATTCTACC TAAAGGAGGGTCGGAGGTAACACAATTTCATTTTTGCTAATAAGTGTGGCAGTTATGTTTACAGGTGATAGGTAAATGAG ACAAGATTTAATTACTATTTGTTTTTACTAATTGTTTCCTTCTACCATCGGGTTGTTGTATACAATTTAATTCAAA
CDS sequence (LotjaGi4g1v0228600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCCCAACCCAGGAACCTTCCCCATTCTCTCCTACGTCATGTCCCGCCTCCCTTCCTTCAGCCCCAGCACCACCAC CACCACCACTTCCACTTCCAATTCCCAATCCGACGTCGAACAACCGCTATCACCACCCTCAGACCCTTCGTCCTCTTCCT CAATCATCGGCCAAATGCCGAATCTGACAGACCCGAAGCTTCTGGCGGCAATGACCCGCGCAATCTCCGACGTCTCGCAG GCCAGAGCCGTCCTGAAACTGATCGGCGAGCGGCCAACCCACGAGGAGGTCGACGACTCCAGGGCCAAACTGGCGGACCT CGACGCCCATCTTTCCCGCCAGATGGAAGAGATCGTCGGCCTCCCCAAGCCGCCCGAGGTAAACGACGACCAATGGCGGG TTCACCTCGCCGAGAGGGAGACGCAGTGCAGGGATTCCGTGGAGAAGGATAGGCGCGTGTTCAAGTCGCTGTTGCAGCTG GAGGAGATGCATGACGCTTACGCGAAGCTTCTCAAGGACGCGGAAAAGCGGCTTGTGAAGATTTACGAGGGCGGCGAGGA TGAGAACGACGGCGACAATGATGGTGGCGCTGCGGCGGTGGCTGTGGAAGAGGAACAGGTTGCGGGGATGCTGCAGGAGG CTTGTGGGAAAGGGGTGGAGCATGTGGATCTTTCCGGGCAGCACCTGAGGAAGCTTCCTGAAGCATTTGGCCGCATTATC CCTTCCTTGGTGGTGCTCAATCTCTCCACCAATCAGCTTTCGGTGATTCCTGACTCAATAAGTGGATTGCAAAATCTTGA GGAGCTTAATGTGTCTACAAATGTTTTGGAATCACTGCCAGATTCAATTGGCTTGTTACAGAAGTTGAAAATCCTCAATG TCTCTGGAAATAAGCTGAGTGCCCTTCCTGATTCAATCAGTCAGTGCAGGTCTTTGGTGGAGCTAGATGCTAGCTTTAAC AGTCTGCAATATTTGCCAACAAACATTGGATTTGAGTTACAGAGTTTAAAGAAGCTCTTGATTCAGCTAAACAAGATACG ATCCCTTCCCTCATCTATTTGTGAGATGAAGTCCCTCCGCTATCTGGATGCTCACTTCAATGAGCTACATGGGCTTCCTA ATGCCATTGGGAAATTGAGTCATCTTGAAGTTCTTAACCTGAGCAGCAACTTCAGTGATCTTCAAGAACTTCCAGAAACA TTTGGTGATCTGAGTAGCCTCAGGGAATTGGATCTCAGCAACAATCAAATTCATGCACTTCCTGATACATTTGGCCGCCT TGATAATTTGACCAAGCTGAACTTGGAGCAGAACCCTCTTGAAGTGCCACCTATGGAGATTGTAAATCATGGTGTCCAAG CCATAAAGTCATTCATGGCCAAGAGGTGGATTGAAATATTGGCAGAGGAAGATAGGAAACACACACAGGAATTTCCAGAA GAAGGGCAGAATGGGTGGCTAACTCGAAGTACCTCCTGGTTAAAGAATGTTTCTGTAAATGTAACTGAGTATCTCGAAAC TACCGTTATGTCCCCCAAAGCTCCCAGAACTCCCAGAGATGCTTATCTTAATCAGCAGCTATGA
Protein sequence (LotjaGi4g1v0228600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDPNPGTFPILSYVMSRLPSFSPSTTTTTTSTSNSQSDVEQPLSPPSDPSSSSSIIGQMPNLTDPKLLAAMTRAISDVSQ ARAVLKLIGERPTHEEVDDSRAKLADLDAHLSRQMEEIVGLPKPPEVNDDQWRVHLAERETQCRDSVEKDRRVFKSLLQL EEMHDAYAKLLKDAEKRLVKIYEGGEDENDGDNDGGAAAVAVEEEQVAGMLQEACGKGVEHVDLSGQHLRKLPEAFGRII PSLVVLNLSTNQLSVIPDSISGLQNLEELNVSTNVLESLPDSIGLLQKLKILNVSGNKLSALPDSISQCRSLVELDASFN SLQYLPTNIGFELQSLKKLLIQLNKIRSLPSSICEMKSLRYLDAHFNELHGLPNAIGKLSHLEVLNLSSNFSDLQELPET FGDLSSLRELDLSNNQIHALPDTFGRLDNLTKLNLEQNPLEVPPMEIVNHGVQAIKSFMAKRWIEILAEEDRKHTQEFPE EGQNGWLTRSTSWLKNVSVNVTEYLETTVMSPKAPRTPRDAYLNQQL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 19 | 60 | 42 | - | – | |
| PANTHER | 44 | 527 | 484 | 2.8E-176 | – | |
| PANTHER | 44 | 527 | 484 | 2.8E-176 | – | |
| Coils | 157 | 177 | 21 | - | – | |
| Gene3D | 187 | 326 | 140 | 1.2E-32 | ||
| SUPERFAMILY | 215 | 445 | 231 | 7.99E-51 | – | |
| Pfam | 219 | 276 | 58 | 2.4E-8 | ||
| SMART | 240 | 262 | 23 | 6.4 | ||
| SMART | 240 | 259 | 20 | 100.0 | – | |
| ProSiteProfiles | 242 | 263 | 22 | 7.196 | ||
| SMART | 263 | 282 | 20 | 1.6 | – | |
| SMART | 263 | 285 | 23 | 10.0 | ||
| ProSiteProfiles | 265 | 286 | 22 | 7.843 | ||
| SMART | 286 | 309 | 24 | 0.0059 | ||
| SMART | 286 | 305 | 20 | 0.041 | – | |
| ProSiteProfiles | 288 | 309 | 22 | 7.327 | ||
| SMART | 309 | 328 | 20 | 86.0 | – | |
| SMART | 310 | 332 | 23 | 200.0 | ||
| ProSiteProfiles | 311 | 332 | 22 | 5.471 | ||
| Gene3D | 332 | 460 | 129 | 2.6E-31 | ||
| SMART | 333 | 352 | 20 | 39.0 | – | |
| SMART | 333 | 356 | 24 | 5.0 | ||
| ProSiteProfiles | 335 | 356 | 22 | 6.426 | ||
| SMART | 356 | 375 | 20 | 220.0 | – | |
| ProSiteProfiles | 358 | 379 | 22 | 5.871 | ||
| SMART | 379 | 400 | 22 | 27.0 | – | |
| SMART | 379 | 403 | 25 | 25.0 | ||
| Pfam | 380 | 440 | 61 | 1.0E-10 | ||
| ProSiteProfiles | 381 | 401 | 21 | 6.257 | ||
| SMART | 404 | 423 | 20 | 7.6 | – | |
| SMART | 404 | 426 | 23 | 5.6E-4 | ||
| ProSiteProfiles | 406 | 427 | 22 | 7.897 | ||
| SMART | 427 | 450 | 24 | 130.0 | ||
| ProSiteProfiles | 429 | 449 | 21 | 5.386 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0228600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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