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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0228800 |
| Transcript ID | LotjaGi4g1v0228800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc transporter; TAIR: AT1G31260.1 zinc transporter 10 precursor; Swiss-Prot: sp|Q8W245|ZIP10_ARATH Probable zinc transporter 10; TrEMBL-Plants: tr|I3RZR8|I3RZR8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0228800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:53867986..53872435) extracted from Lotus japonicus Gifu genome v1.2.
GATAAATTTATGAGACAATCATTCCTTCATCTATCTGTAAAATGTTGTATTCTCTTTTCTGTAAAAAACATAATTATTAA TGTATGTGTCATTTACTTAACGGCATACGTTTTTTTGGAATAATTGGTTCTTGATGCATATGATATTAAAGTTTCTATGA CTTAAAAGTCTAGAGTTGAATCCCCACTGCTCCAATTTCTTCTAATAAAAAATGTTAAATTTCGGCGCATGATAAATAGG TGCATGTCTTATTTTCAGGAATAATCCTTCATATGTTTTATTACTGAATATATGCATTATTAGTAGAAATATAATAATTC TTATACCTTTACTCAATGATTTAAATTTTTGGAATAATTAATTTGTATATTTTTTTGCATATGTAGTTGGTATGTGTATC CATCATGGAATAATTCATAACATGTAAGCCAAAGTGGCAAACGTCTATATAAAAAAGCTTAATGCCTCCATCTAAAAACA GAGCAAAACAGATCACTAAGCATTTTGACCATTATAGTTCACTAAAATGGCCATCACTTCAGTAACTCTTATCAAGATGA TCTCTGTCATCTTCATCCTCATCACTCTTTTCACTTCCCAAGCTGCAGCTGATTGTGCAACCGAAAAAGCAGACAGCTGC GTCAACAAGGAAAAGGCTAAGCCTCTTAAAATCATAGCCATCATCACCATCTTAGTTTCTAGCATCATTGGCGTGTGCTC ACCCTTGTTGACGCGTTCAATCCCTGCTTTTAGCCCCGAAAGCAATCTCTTCATAATCGTGAAGTGCTTCGCCGCTGGTA TTATTCTCGGGACCGGGTTCGTGCATGTTCTTCCTGATTCATTTGACATGCTCTGGTCTGATTGCTTGCAAGAGAAACCA TGGCATGAGTTTCCATTTTCTGGATTTGTTGCCATGTTTTCTGCATTAGTCACCATGATGATAGACTCTTTGGCTACTAG CTTTTATACCAGAAGGAATAAATCTGGAGTTATTCCAGAGAACCATGTTGAAGGTGGAGAAGATCGAGAGATGGGTGCTG TTGTGAATGTTGGGCATTCACATGGTCACCATCACTTTCATCAAGAAACCAAGACAGATCGCACAGATTCACAACTTATG CGTTATCGTGTGGTTGCCACGGTAAGATTGTTTTAACTCTTTATAGCACTGACTGTACCTGATTCGTGTATCACAGATTA CAGGCAAACATTGACACCTGAATTCTTAGTGTCGAAAATCACCATAAATTACAGAGTTTAACCGCGTCAAATTATAGGTT TAGGTGTCTATCACTATTACGAACCAGAATCATTTTTACTTTCAAATAAACTTTTGCTACATATATAGTACATAGTATAT GTTGTAGATTTTGATTCATTCATACCTCACATTGTTTTCCATTTAATTTCCCCGCATTTTATTTTTATATTTTCTTTTAT CAGATTACTCACTATATCTCTTTTTTCTCTTTCTTTTCTTTCTATATTTATCTCCTTATTTTTGTGTGAGTCAAACCTTA TTGACTTTGATGTATCAACACCCTTATTAATTCCTTTTATATCTAATTTTTCACCTACTCTTTTTTCTATCTTTCTTTTC TTTTTAACACATCACCTATGATATATTTCACTTCTCTCTTCTATTTTTATCTTTCTCTAAATAGTGGAGGTGAAATTGGT GTGAAGAACGTATTTTTCCAAATTTTATTGCTACTTCAAAAGCTTAAAGTATTGTTTTTTTAAGTATATTTGGTTGACAC TACTTTTCCACCCGCACTAAAGTAGAGAAATAAAAGATATAATGAATGATATGAACGGTTAAGTTGAAGCTCACTAATGA TTTTATATTAAAGTCTTAGATGATGTTATAGTGTTTAAATAAACTAATTATCTAAAATACTTAAGTGTCTGTTTGTATTA GCTCAATGTTATGCCAATGACATCTTTTATCCTGTCATGTGAGTGATTATATGTGCTTATATTGGTGTGGATTGATCGAT ATACAAAGATATCCTAAGTTGTTGGATTAAATTATGAATAATTTTACATTATTTTTCTATTAAATTTATATTATATTTTT ACCATATATATCCATCACGTAAGCTATAGATCAAACTTTATCTGGATGCCTAATAGGGGTGCACATGGCCGGGTCAACCC AATGAATTCATCTAACCCAATCCGATTCAATGGTAAAAATGCGGGTTGGATTGGGCAAACGGGTCAATCAGATGGATTTT ATTACGATCCAATCATCTTTGGATCGGATATCGGATTCCATAATAATCCATCCAACCCAACCCGAAATCCAATCGTATAA TAATGATATATTATTTAATATATATTTTTAATAATTTTAATTTTTACCTAACCTACTAGTAGGGTATGTAATTTATGGAG ACTTGAAGTCCTACTATTTGAGTGATTTTTAGGAAACTTTGAGACTAATTTGTCTGAAATTACTTGTTATATTTAAAGAC TTGAAGTACTAGTTTAATTAATGTGTTGTTGTATAGATGTATGTAGACGGTAGTTATGAATTTATGATGCAATTGCATGT TAGAGACTTGAAGTACTTAATTTTTAATATTTGACATTTATTTTTATTTTAATATAGCGATCCAATCAATCCATCCAAAC TAACCCGAAGATTGTCGGATTGGGTTGGTTCGGGTTCTTAGGTGAAAATTCACGAAATCCAACCCAACCCAACCCAAACA GTTTTGATCGGTTCGGGTCCTGATTAGCCTGAAAATTCATCCAACTCAACCCATGTAGCCCTAATGCCTAATTGGCTTTT GCCTGAACATTGCAGACATCCCCTTATTTTATGTTAAAATTAGCTTTATATCAGAATAATTGGGCAATAAAGATGGAGTT TTAATTCACTTCATCATAGATAGCATAAACATATGCTTTCTTTGATATTCTAATAAAATATATACATATGATGGAAACGC AGGTATTAGAACTTGGAATTGTTGTGCATTCAGTGGTGATTGGACTTTCCATGGGAGCCTCAAATAACACATGCACAATA AAAGGACTAGTGGCTGCCATGTGCTTCCATCAAATGTTTGAAGGCATGGGGCTTGGTGGCTGCATTCTCCAGGTGACACC ACATTATAAATAGTGCACGCATGGAAACATTTTTGCAATTGATTATGGAACTAACATCAGTTTTGATCGAGGAGAAGCTT TGCAAGAAGTTTCTGGATTTCATAATTAATTATGATAAATCACCAATTAATCAAAACATGCTTCTACTCTCAGTTCATTT CAGTTTAAGTTGTGATACCCATAAAGCTCTTCAATCTCTCAAATAATTTGTCTCTGAAACTGCAGGCAGAGTACAACTTC GCAAAGAAGGCGATCTTTGTGTTCTTCTTCTCAGTGACAACCCCATTTGGAATTGCATTAGGAATGGCAATGTCCACAAG CTACAAAGAGAACAGCCCAAGTGCACTCATTATTGTAGGATTGCTTAATGCATCATCTGCTGGGCTTTTAGTCTACATGG CATTAGTTGACCTGCTTGCTGCTGATTTTATGAGTCCAAGGTTGCAGGGGAGCATTAAGCTTCAACTAAAATCTTACATT GCAGTCTTTTTGGGTGCCGGTGCCATGTCTCTCATGGCAAAATGGGCATAATTTTCTCAGAACTACTTTTTTAACGCATT AATGTTAATCAATGAACCTCCTCTAGTGTGTTTGGATCAACATGCGTTTGCAAAATTGATTCTAATAAAATTGAGTATTG TAAACGTGAATAAAAGTTACGTAATTTATGTTTGGAAACATCTATCATAAAATGACAAATTTAAGTGAATTTCATTCATA CAACTTATGTTAGAAATTTTTTTTTTACATCGAAAAAATATATTAGAATTGATTTTGTGTGTTTAATGATCATAATAGGG TATATTAGAATATTATAATCAATATACACCATAAAGATGGGGTAAAATAGGTGTGAAGAAAATATTTTCATATGATAACT AATCATTCTTCTAATTAAATTTTTTGTGTTGTCAGCAGCATATGTGTATTCATCATAAAGTAAGTAATAATGTCATGAAC CAACTTACCATATTTTTCTTGGATAAATAGATCTATGCTCTACACGGTGAAATTGTTTGCAGCTCCCTCCTAGATTTTAT TTTTAAAGGTTAAGATTGTTGCATGAAAAATAATTAGTTATAAATGTTTAACAATTATTGATGATCTATTCAAAAAAAAA AACAATTATTGATGCGAGACCCCAGGAGCGCCAGCTTAGGGCGACGAGCAGATCAGGGACTTGGGCCTCCTCCCAGAGGC CCAACCGGCCCATTAGGAATGGATAGAGGCGCCAAGCCCAACTTCACATCAATAAATAGGGGATGAATACCAATTGTAAA TGACTCTTGGCTCATTTGTGAAATAACAAGATTGAAATTCAATTACTTTC
CDS sequence (LotjaGi4g1v0228800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCATCACTTCAGTAACTCTTATCAAGATGATCTCTGTCATCTTCATCCTCATCACTCTTTTCACTTCCCAAGCTGC AGCTGATTGTGCAACCGAAAAAGCAGACAGCTGCGTCAACAAGGAAAAGGCTAAGCCTCTTAAAATCATAGCCATCATCA CCATCTTAGTTTCTAGCATCATTGGCGTGTGCTCACCCTTGTTGACGCGTTCAATCCCTGCTTTTAGCCCCGAAAGCAAT CTCTTCATAATCGTGAAGTGCTTCGCCGCTGGTATTATTCTCGGGACCGGGTTCGTGCATGTTCTTCCTGATTCATTTGA CATGCTCTGGTCTGATTGCTTGCAAGAGAAACCATGGCATGAGTTTCCATTTTCTGGATTTGTTGCCATGTTTTCTGCAT TAGTCACCATGATGATAGACTCTTTGGCTACTAGCTTTTATACCAGAAGGAATAAATCTGGAGTTATTCCAGAGAACCAT GTTGAAGGTGGAGAAGATCGAGAGATGGGTGCTGTTGTGAATGTTGGGCATTCACATGGTCACCATCACTTTCATCAAGA AACCAAGACAGATCGCACAGATTCACAACTTATGCGTTATCGTGTGGTTGCCACGGTATTAGAACTTGGAATTGTTGTGC ATTCAGTGGTGATTGGACTTTCCATGGGAGCCTCAAATAACACATGCACAATAAAAGGACTAGTGGCTGCCATGTGCTTC CATCAAATGTTTGAAGGCATGGGGCTTGGTGGCTGCATTCTCCAGGCAGAGTACAACTTCGCAAAGAAGGCGATCTTTGT GTTCTTCTTCTCAGTGACAACCCCATTTGGAATTGCATTAGGAATGGCAATGTCCACAAGCTACAAAGAGAACAGCCCAA GTGCACTCATTATTGTAGGATTGCTTAATGCATCATCTGCTGGGCTTTTAGTCTACATGGCATTAGTTGACCTGCTTGCT GCTGATTTTATGAGTCCAAGGTTGCAGGGGAGCATTAAGCTTCAACTAAAATCTTACATTGCAGTCTTTTTGGGTGCCGG TGCCATGTCTCTCATGGCAAAATGGGCATAA
Protein sequence (LotjaGi4g1v0228800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAITSVTLIKMISVIFILITLFTSQAAADCATEKADSCVNKEKAKPLKIIAIITILVSSIIGVCSPLLTRSIPAFSPESN LFIIVKCFAAGIILGTGFVHVLPDSFDMLWSDCLQEKPWHEFPFSGFVAMFSALVTMMIDSLATSFYTRRNKSGVIPENH VEGGEDREMGAVVNVGHSHGHHHFHQETKTDRTDSQLMRYRVVATVLELGIVVHSVVIGLSMGASNNTCTIKGLVAAMCF HQMFEGMGLGGCILQAEYNFAKKAIFVFFFSVTTPFGIALGMAMSTSYKENSPSALIIVGLLNASSAGLLVYMALVDLLA ADFMSPRLQGSIKLQLKSYIAVFLGAGAMSLMAKWA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 28 | 28 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| SignalP_EUK | 1 | 28 | 28 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 28 | 28 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 12 | 23 | 12 | - | – | |
| PANTHER | 13 | 356 | 344 | 3.0E-160 | – | |
| PANTHER | 13 | 356 | 344 | 3.0E-160 | – | |
| Phobius | 24 | 28 | 5 | - | – | |
| Phobius | 29 | 46 | 18 | - | – | |
| TIGRFAM | 30 | 356 | 327 | 1.2E-144 | ||
| Pfam | 47 | 353 | 307 | 5.7E-73 | ||
| Phobius | 47 | 69 | 23 | - | – | |
| TMHMM | 49 | 68 | 20 | - | – | |
| Phobius | 70 | 80 | 11 | - | – | |
| TMHMM | 80 | 102 | 23 | - | – | |
| Phobius | 81 | 102 | 22 | - | – | |
| Phobius | 103 | 121 | 19 | - | – | |
| TMHMM | 122 | 144 | 23 | - | – | |
| Phobius | 122 | 143 | 22 | - | – | |
| Phobius | 144 | 201 | 58 | - | – | |
| Phobius | 202 | 222 | 21 | - | – | |
| TMHMM | 202 | 224 | 23 | - | – | |
| Phobius | 223 | 233 | 11 | - | – | |
| Phobius | 234 | 254 | 21 | - | – | |
| TMHMM | 234 | 253 | 20 | - | – | |
| Phobius | 255 | 265 | 11 | - | – | |
| TMHMM | 265 | 284 | 20 | - | – | |
| Phobius | 266 | 288 | 23 | - | – | |
| Phobius | 289 | 293 | 5 | - | – | |
| Phobius | 294 | 315 | 22 | - | – | |
| TMHMM | 294 | 316 | 23 | - | – | |
| Phobius | 316 | 335 | 20 | - | – | |
| TMHMM | 336 | 353 | 18 | - | – | |
| Phobius | 336 | 355 | 20 | - | – | |
| Phobius | 356 | 356 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion transmembrane transporter activity | Enables the transfer of zinc (Zn) ions from one side of a membrane to the other. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Metal ion transmembrane transporter activity | Enables the transfer of metal ions from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. | ||
| Biological process | Zinc ion transmembrane transport | A process in which a zinc II ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. |
Expression pattern of LotjaGi4g1v0228800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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