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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0229000 |
| Transcript ID | LotjaGi4g1v0229000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc transporter protein; TAIR: AT1G31260.1 zinc transporter 10 precursor; Swiss-Prot: sp|Q8W245|ZIP10_ARATH Probable zinc transporter 10; TrEMBL-Plants: tr|I3RZR8|I3RZR8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0229000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:53880432..53882908) extracted from Lotus japonicus Gifu genome v1.2.
CAACAGTTTGACCATTATAGCCCACTAGAATGACCATCTTCATCATCATCCTCACCCTTTAGTAACTCTTGTTTTTAATG CTATGAGTATTTTGTCAAGATGATGTCTGTCACCTTCATCCTCATCCTCACTCTTTTCACTTCCCAAGCAGTGGCTGATT GTGCAATACAAAAAGTAGACAAATGCCACAACAAGGAAAAAGCTCTGCCTCTCAAAATCATAGCTATCTTCGCTATCTTT GTTGCTAGCATCCTTGGTGTGTGCCTGCCCTTGGCGACGCATTCAATCCCTGCTCTTGGCCCTGAAAGCAATTTCTTCAT AATCGTCAAGAGTTTCACAGCTGGAATTATTCTCGGGACCGGGTTCCTTCATGTTCTTCCTGAAGCATATGACCAGCTCT GGTCTGAATGCTTGCCAGAGAAACCATGGCATGAGTATCCATTTCCTGGGCTCGTGGCTATGTTTTCTGCAATAATTACC ATGATGGTGGATTCTTTGGCTACTAGCTTTTGTTTCAAAAAGCATAGAAGACCTGAAGATATTCCACATCAGGACCATCA TGAAGGTGGAGATCAAGAGATGGGTAGTGTTGTTAATTTTGGGCATCCCCGTCATCGACCCCATCAAGAGATCAATGCAT CAAACAAGGAGTCCCAACTTATGCATTTTCGTGTAGTCGCCTCGGTAAGATTGCGTGTTTAACTCGTTTAAAGTTAATCA CATGCATGTAAGTGTGTCTTTGTATACGAGTTATCTCTCTTCGTTTCATGTCACATCATATACTACATTTAACATATCTT TTTCACCTGATTCCTCCTCTCTGAAGGTGTAGGTGGAATTAATTGCGAGAAATTTATTTTTGATAAGTTTAATATCTCTA AAGAGCCTTTAACCTTGAAATGTGTGAATGTTTCAGTTGAAGCTCTTGAATGATCTTGGGTATGTTCTATACATAGTAAA AAAAATTTAGTGAATACTAAAATTGTAATAAACAGAAGTGTATAATTTTCCGTAACTTTTACGACTAATTACCAAATTTA TTAATATTACTCTGATTTTTCATCATCAATCCAAACATACACATATATCAAAGTCTTAAGATATGTTGGTAATGTCATAT CTAATTATTAGAAAAGTTTAAACCTTCGGGCAAAATACACGTATGTATATATATATATATATATATATACACACACAGTA TGCTCACTCACCTAAGTCATGGTCCAAGCTTTGTCACTTGATGCCCAATTGGCTCTGGCTCTTGGGTGGAAACTCCACAA AAACAAATTTTATGTAGAAATTCACATTTTTATTAGAATAAACAAAGATCAAGTTCCAAACTACTTGTGTGCAGACGTTT TAATATCATAAATTAACTATTCTAAAAGTTTAAGTTGTTCTAATGAAAAACAAAGTGATCATGAATGGATTTTGACTGCA ACGTCAGCATGAACTTGTGCTCCCTTTAATATTCTAAGCAAACACATGTTTCAAATGCAGGTTTTAGAACTTGGAATTGT TGTTCATGCAGTGGTGGTAGGACTTTCCATGGGAGCCTCAGACAATACATGCACAATAAAAAGTCTCGTGGCCGCCATGT GCTTCCATCAACTGTTTGAAGGCATGGGGCTTGGTGGATGCATTCTCCGGGTAACACCTCATCATAATAATGCGGGTTTC AAAACTATTCTAGAATTTCTTGTGAAGTCCGAATCAATTTATACTCAATTAGAAGTTTTTATTCATGAAACAAAAGTTGA TCCAAGCATACCAATAGTTCATTTCATTTTATATTGAACATGTTTGGATATACACGTAAATTGGCGCATATTTACTTGAA AATGCACTACAAAAAGCTTCAATAACTTGCATCCAAACTGGTACATTGTGATAAATATACAGCCCTTCAATGCCTCATAA ATTAGTTTTTCTCTGAAACAGGCTGAGTACAGTATGATGAAGGTAGCAATCTATGTGTCCTTCTTCTCAGTGATAACCCC ACTTGGAATTGCCGTAGGAATGGCAATAACCACAATCTACAATGAGAACAGTCGAGGTGCACTCATTACTGTGGGATTGC TTAATTCAGCATCTGCTGGTATTTTAGTCTACATGTCTTTGGTTGTCCTGCTTGCTACCGATTTTATGAGTCCAAGGTTG CAGGGGTGCATTAGGCTTCAATTAAAATCTTACGTGGCAGTCTATTTGGGTGCAGGTGCCATGTCTCTCGTGGCAAAATG GGCTGCCTAATTTTCCCATACCTACTTTTTTAATGTTAATTAATGAACCTCTTCTAAGTTGGCACTGCCAAGCTTTGATA AGGAGTTTACCATGTGAAATAGGAAGTTTGATAGTGATGTGATTCGCGATCAAGTTAAAATGATTTTCTCTAGATTTGTT ACTTTATACATCAATGAATTCGAATTCATGTTAATGTGTTGTTAGCACTCACTCTATTAAGAGAAAGTCTTCATGGA
CDS sequence (LotjaGi4g1v0229000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGTCTGTCACCTTCATCCTCATCCTCACTCTTTTCACTTCCCAAGCAGTGGCTGATTGTGCAATACAAAAAGTAGA CAAATGCCACAACAAGGAAAAAGCTCTGCCTCTCAAAATCATAGCTATCTTCGCTATCTTTGTTGCTAGCATCCTTGGTG TGTGCCTGCCCTTGGCGACGCATTCAATCCCTGCTCTTGGCCCTGAAAGCAATTTCTTCATAATCGTCAAGAGTTTCACA GCTGGAATTATTCTCGGGACCGGGTTCCTTCATGTTCTTCCTGAAGCATATGACCAGCTCTGGTCTGAATGCTTGCCAGA GAAACCATGGCATGAGTATCCATTTCCTGGGCTCGTGGCTATGTTTTCTGCAATAATTACCATGATGGTGGATTCTTTGG CTACTAGCTTTTGTTTCAAAAAGCATAGAAGACCTGAAGATATTCCACATCAGGACCATCATGAAGGTGGAGATCAAGAG ATGGGTAGTGTTGTTAATTTTGGGCATCCCCGTCATCGACCCCATCAAGAGATCAATGCATCAAACAAGGAGTCCCAACT TATGCATTTTCGTGTAGTCGCCTCGGTTTTAGAACTTGGAATTGTTGTTCATGCAGTGGTGGTAGGACTTTCCATGGGAG CCTCAGACAATACATGCACAATAAAAAGTCTCGTGGCCGCCATGTGCTTCCATCAACTGTTTGAAGGCATGGGGCTTGGT GGATGCATTCTCCGGGCTGAGTACAGTATGATGAAGGTAGCAATCTATGTGTCCTTCTTCTCAGTGATAACCCCACTTGG AATTGCCGTAGGAATGGCAATAACCACAATCTACAATGAGAACAGTCGAGGTGCACTCATTACTGTGGGATTGCTTAATT CAGCATCTGCTGGTATTTTAGTCTACATGTCTTTGGTTGTCCTGCTTGCTACCGATTTTATGAGTCCAAGGTTGCAGGGG TGCATTAGGCTTCAATTAAAATCTTACGTGGCAGTCTATTTGGGTGCAGGTGCCATGTCTCTCGTGGCAAAATGGGCTGC CTAA
Protein sequence (LotjaGi4g1v0229000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMSVTFILILTLFTSQAVADCAIQKVDKCHNKEKALPLKIIAIFAIFVASILGVCLPLATHSIPALGPESNFFIIVKSFT AGIILGTGFLHVLPEAYDQLWSECLPEKPWHEYPFPGLVAMFSAIITMMVDSLATSFCFKKHRRPEDIPHQDHHEGGDQE MGSVVNFGHPRHRPHQEINASNKESQLMHFRVVASVLELGIVVHAVVVGLSMGASDNTCTIKSLVAAMCFHQLFEGMGLG GCILRAEYSMMKVAIYVSFFSVITPLGIAVGMAITTIYNENSRGALITVGLLNSASAGILVYMSLVVLLATDFMSPRLQG CIRLQLKSYVAVYLGAGAMSLVAKWAA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 19 | 19 | - | – | |
| Phobius | 1 | 19 | 19 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 19 | 19 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 19 | 19 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| Phobius | 4 | 14 | 11 | - | – | |
| PANTHER | 13 | 346 | 334 | 3.3E-134 | – | |
| PANTHER | 13 | 346 | 334 | 3.3E-134 | – | |
| Phobius | 15 | 19 | 5 | - | – | |
| Phobius | 20 | 34 | 15 | - | – | |
| TIGRFAM | 21 | 346 | 326 | 2.6E-130 | ||
| Phobius | 35 | 60 | 26 | - | – | |
| Pfam | 38 | 343 | 306 | 6.4E-67 | ||
| TMHMM | 40 | 59 | 20 | - | – | |
| Phobius | 61 | 71 | 11 | - | – | |
| TMHMM | 71 | 93 | 23 | - | – | |
| Phobius | 72 | 93 | 22 | - | – | |
| Phobius | 94 | 112 | 19 | - | – | |
| Phobius | 113 | 134 | 22 | - | – | |
| TMHMM | 113 | 135 | 23 | - | – | |
| Phobius | 135 | 191 | 57 | - | – | |
| Phobius | 192 | 212 | 21 | - | – | |
| TMHMM | 192 | 214 | 23 | - | – | |
| Phobius | 213 | 223 | 11 | - | – | |
| Phobius | 224 | 246 | 23 | - | – | |
| TMHMM | 224 | 243 | 20 | - | – | |
| Phobius | 247 | 252 | 6 | - | – | |
| Phobius | 253 | 278 | 26 | - | – | |
| TMHMM | 255 | 277 | 23 | - | – | |
| Phobius | 279 | 283 | 5 | - | – | |
| Phobius | 284 | 309 | 26 | - | – | |
| TMHMM | 287 | 309 | 23 | - | – | |
| Phobius | 310 | 328 | 19 | - | – | |
| Phobius | 329 | 346 | 18 | - | – | |
| TMHMM | 329 | 346 | 18 | - | – | |
| Phobius | 347 | 347 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion transmembrane transporter activity | Enables the transfer of zinc (Zn) ions from one side of a membrane to the other. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Metal ion transmembrane transporter activity | Enables the transfer of metal ions from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. | ||
| Biological process | Zinc ion transmembrane transport | A process in which a zinc II ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. |
Expression pattern of LotjaGi4g1v0229000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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