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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0229700 |
| Transcript ID | LotjaGi4g1v0229700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb transcription factor; TAIR: AT5G26660.1 myb domain protein 86; Swiss-Prot: sp|Q8LPH6|MYB86_ARATH Transcription factor MYB86; TrEMBL-Plants: tr|A0A0R0JXT1|A0A0R0JXT1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0229700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:53943008..53945115) extracted from Lotus japonicus Gifu genome v1.2.
GTAAAACCCACTTGATTGCTGCACCTTCCTCTGTATTCTTTATCTTTATTTTTCTCTCTCTATATCTTAACTTCAATCCT AAGTATGATTTATGATCCAACCCTCTTCTTTAAATGAACACAATTAGTTTTTGAGTTACTCCCTCTCCTCCACCCCACAA CATAAGAAACATCATATATTTTTCTACCTCATCAAACGTTAAAATGACATAATTAGCACACACACTGAGGTAACATTTTC ACGCTATATAGAGACAGTGACCTCTTCAGAACTTGCTCACAATAGTGCTGTTCCTCCAAACCCAAGTAACATTGGCATTC CCAATTCCCACTGTCCTCGCTCTCCCAGCACAAACTAACAAATGGGTCGCCATTCCTGTTGTGTGAAGCAAAAGTTGAGG AAAGGTTTATGGTCCCCTGAAGAAGATGAGAAGCTCTTCAATCACATAACCAGATTTGGTGTTGGTTGCTGGAGTTCTGT TCCCAAACAAGCTGGTACATAACTAGTAACATGATGTTAATTTAATTTGATGAAAACAAACAAAGCTTTCTTCTATTCTT CAAAGGGTAGTGTCTATAACATGTTTGATGAATTGCAGGACTGCAAAGATGTGGAAAGAGTTGCAGGTTGAGATGGATAA ACTACTTGAGGCCTGATTTGAAGAGAGGCATGTTCTCACAGCAAGAGGAGGATCTTATAATCAATCTTCATGAAGTCCTT GGAAACAGGTAACAACATTAACATATTTTGTATGATGATCATCATGAAAATAAACAAAGTTTCTATTCTTTGAGTTGTGA AAGTGATGATTTTTTGTTTTCAATATCAGGTGGGCTCAGATAGCAGCACAGTTACCAGGGAGAACAGATAATGAGATTAA GAATTTCTGGAATTCATGTTTGAAGAAGAAGCTAATGAAGCAAGGGATTGATCCAACTACACACAAGCCTCTCACTGATG CTCATGTTAAAGAAGAGAGCAAAAGTCCAGACACAACACCTATGCAGATACCAATGTCTCAAGGGACTTTAGCTACCTCA ACCTTTGGCTCATCACTTGTAATAAGCGATTCAAATCACTATGATGGTGTTCTAACAGAAGCTTCAAGGGAACTTTTCAT GAGCAAGTCAGCATTGGACTCTTTGTCCTACTATGATTTCCAAATTGGTGGTTCTGTGCAGAGTGGTTATAATAACTTAC CCTTCACTCATTATCAGAGTTTTGGTCCCAGTTCAAGCCATGGATTCTCTTCAATGCCAAGCCTAACCCAGTCAGATCAC GGGAACATGTCGTCCGTGGTGACCGAGTTTTCTAACAACAATTCAGCTTCCAAAATCAGTTCCTTGTTCATGAATGATCA GGTGAAAGAAAGTTCCAGCATTAGCTCAAACATGAGCACTATTTATCCAGGAGGGTCTCACTCTCAAATGAGGAGCTTAA TGGAAAATGCAGGATTCTCTTGGGACAATGGAGACAACAAATTGGACCCTTTGTTTCAGTTCCAAGTCAATGGCATAAAA TCTGAGGATTTCAGGACAAGTTCATGGGAAGAAGGGCAGCTGCAGAATCAAAACTCAATAGACTTCACTAGCTGTCCATT AACATCACTGTCAGAGGATCTAACAGAAGCAAATTTTGATGTGTTTCAGCATATATGAACTGTAAAAAATCTTTCTTTCT TTTTTTCTTTTGATTTTTTTGAACTCTTTCTGTCGTTAAAAAAAAACAAGGTAGGAAAGATAGAAAGATGTTGATAGTAC AGGAGATTTCTAGATTATGATTTGAGATGATATTGATACCATTATACCCCCCTCCCCAGCATTTACTTTTCCTATTGATG ATAAATCTGTTTTTATCAGCAAAAGTTTGAATAACAATATATTCTTGAAGGTTGATGATTGAAACTAGTTTTGTTCTGTT CTGTCACTGTAACTAGTGAATTATTATTACATGCAGTGATCATGTCTCAATGTATATTATCCCTTTTCCCTTTTCTTTTG GCTGTCTTCTAATGCAGCTGGTCAAAGACTCTAATATGACCAAAAAGACAAAAACCCCATACAGTACTGCAGCAAAAGCT TACAAATTCCATTTCATTTTCTTTGAAC
CDS sequence (LotjaGi4g1v0229700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTCGCCATTCCTGTTGTGTGAAGCAAAAGTTGAGGAAAGGTTTATGGTCCCCTGAAGAAGATGAGAAGCTCTTCAA TCACATAACCAGATTTGGTGTTGGTTGCTGGAGTTCTGTTCCCAAACAAGCTGGACTGCAAAGATGTGGAAAGAGTTGCA GGTTGAGATGGATAAACTACTTGAGGCCTGATTTGAAGAGAGGCATGTTCTCACAGCAAGAGGAGGATCTTATAATCAAT CTTCATGAAGTCCTTGGAAACAGGTGGGCTCAGATAGCAGCACAGTTACCAGGGAGAACAGATAATGAGATTAAGAATTT CTGGAATTCATGTTTGAAGAAGAAGCTAATGAAGCAAGGGATTGATCCAACTACACACAAGCCTCTCACTGATGCTCATG TTAAAGAAGAGAGCAAAAGTCCAGACACAACACCTATGCAGATACCAATGTCTCAAGGGACTTTAGCTACCTCAACCTTT GGCTCATCACTTGTAATAAGCGATTCAAATCACTATGATGGTGTTCTAACAGAAGCTTCAAGGGAACTTTTCATGAGCAA GTCAGCATTGGACTCTTTGTCCTACTATGATTTCCAAATTGGTGGTTCTGTGCAGAGTGGTTATAATAACTTACCCTTCA CTCATTATCAGAGTTTTGGTCCCAGTTCAAGCCATGGATTCTCTTCAATGCCAAGCCTAACCCAGTCAGATCACGGGAAC ATGTCGTCCGTGGTGACCGAGTTTTCTAACAACAATTCAGCTTCCAAAATCAGTTCCTTGTTCATGAATGATCAGGTGAA AGAAAGTTCCAGCATTAGCTCAAACATGAGCACTATTTATCCAGGAGGGTCTCACTCTCAAATGAGGAGCTTAATGGAAA ATGCAGGATTCTCTTGGGACAATGGAGACAACAAATTGGACCCTTTGTTTCAGTTCCAAGTCAATGGCATAAAATCTGAG GATTTCAGGACAAGTTCATGGGAAGAAGGGCAGCTGCAGAATCAAAACTCAATAGACTTCACTAGCTGTCCATTAACATC ACTGTCAGAGGATCTAACAGAAGCAAATTTTGATGTGTTTCAGCATATATGA
Protein sequence (LotjaGi4g1v0229700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRHSCCVKQKLRKGLWSPEEDEKLFNHITRFGVGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIIN LHEVLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLMKQGIDPTTHKPLTDAHVKEESKSPDTTPMQIPMSQGTLATSTF GSSLVISDSNHYDGVLTEASRELFMSKSALDSLSYYDFQIGGSVQSGYNNLPFTHYQSFGPSSSHGFSSMPSLTQSDHGN MSSVVTEFSNNNSASKISSLFMNDQVKESSSISSNMSTIYPGGSHSQMRSLMENAGFSWDNGDNKLDPLFQFQVNGIKSE DFRTSSWEEGQLQNQNSIDFTSCPLTSLSEDLTEANFDVFQHI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 300 | 300 | 4.8E-109 | – | |
| PANTHER | 1 | 300 | 300 | 4.8E-109 | ||
| ProSiteProfiles | 9 | 61 | 53 | 17.443 | ||
| Gene3D | 11 | 67 | 57 | 1.1E-17 | – | |
| SUPERFAMILY | 12 | 108 | 97 | 1.12E-28 | ||
| SMART | 13 | 63 | 51 | 1.0E-11 | ||
| Pfam | 14 | 61 | 48 | 4.2E-13 | ||
| CDD | 17 | 61 | 45 | 2.33114E-11 | ||
| ProSiteProfiles | 62 | 116 | 55 | 24.457 | ||
| SMART | 66 | 114 | 49 | 1.4E-13 | ||
| Pfam | 67 | 111 | 45 | 9.0E-13 | ||
| Gene3D | 69 | 142 | 74 | 1.1E-19 | – | |
| CDD | 70 | 109 | 40 | 4.04077E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi4g1v0229700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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