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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0230500 |
| Transcript ID | LotjaGi4g1v0230500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FKBP12-interacting protein of 37 kDa; TAIR: AT3G54170.1 FKBP12 interacting protein 37; Swiss-Prot: sp|Q9ZSZ8|FIP37_ARATH FKBP12-interacting protein of 37 kDa; TrEMBL-Plants: tr|I1MTE4|I1MTE4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0230500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:54103157..54108700) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAGAATCGAGGGAGAGGGAAGAGCTATATAATCCAGAAAATCTCGCAGATTCAACATGCAGCAGCAGCAGCAGCAGC AGAAGTAAGCGTCAGAACAACAGTGTTGATTCTGGTTCGATTTCGCCACTGCGATTCGTTCTCTCTTCCCTGCATCTGCA TCACTCAGCTTTCTAGGGTTTCAACTCGACGATGGCTTCTTCCCCTGCTCAATTCGAAGAAGTAAGTCTCTGCATTATCA TCATCTCTCGCTACTTGCTCTCTCACGCGTGATTTTCTTATCATCTTGCTCTTTCTCATAGCAACAGGAGTTTGATTTTG GCGGCGAAATTGCTGGAGCGCGCTCAGGTTTTGTGCTTGTTATCAAACGCATATGCGAATTTCTGCAGATTTTTTGTTGT TTGATTGTGCTGAAATGAAATGGATGTTGTAGGTAACAAGAGGTCATCTCCTGAATTTGATGGTGGAGATTTCGATAAGG ATCACAAGAAGGTGAAATTGGTAGTTAATCAATGATTTTTACTTGCTCTATCGAATTGTTTGAGTCATGGTTTGCTCAAA ATATGAACAATTGTTTGTGGTGTTTCGTCATTTAGGTCAAACCGAATGGTGAAGAAGCTTCTTCTGGTGTCACCACTGGA ATGATCTTGACTCTCCGTGACAGGTATTTCTCGTGTTTTGTCGAATGTTTGTTATTAACGAATTATTATGCTCTCTTAAG ACTGTTGTGAACTGTTTGATTTGAGACTGAATTTTTTGCTGGGTTTTGCTTTCTGCAGTCTTCAGAACTGTCAGGATACG CTTGAGGCATGCCAGGTACGTTTTCCCTTTGACAATGGTGAATGGATGTTGTTTGTTCTGAGAATTTGAACTTATGTTAT ATAGGGAAGTGGGCTGTGGTTATTATTCATATGATTTAAGTGTTGGATTCGTGTATGGCTCACATGGAAAATTGGCTTTG TGGTTATTTATTTCTTATGTTACCACTATGAATGCTTTGTTGTAGAATGCTCAATTGCTTGTAGAACCTACCCATCATAA ATTAGAGATTCCTCATAGCTGAGCCTAAGCTGTTTGAGTGGAGTGTCCTTTTTATTTGAGATTTATGTTTTTTATTTTCA TTTTAGAGTTTAGACTATTGATAGCATCTTAAGTTTCTTTTTACTGCCAGCATCATGCCATTATAATTTTTAAAATTTGT ATGATGTGTCTGTGTTGTGTCGTATCATATCTGTCGCATGTCAGTGCTTTGTAGGACTGCACTCCAAAGTTCCATAGATG GTAGTCTAGATTGATTTGTACCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCCTGTGTCATAT GGATCCCTGTCCTGTGCTGTATTCTAGGTACCCCAAAGTTCCATATATGAAATTATAGGTTGATTTATATCTTTTCATTT CCGATGAACGTTTACTGAATTTATGCATATTCTAGAATGAACTTGATGCTGCAAGATCTGAGATTCAGAAGTGGCGCACT TCATTTCAGAATGAACCTTTCATACCAGCTGGGGTCCCTCCTGGTTAGTTTATACTTGTTTTATTGCAAATGATACATGT ACTAATTGTTCACAATCTAGTTCTGTTTACTGTTGTGTTCTGGGTTTTAAATTTATATACCTGAGCAATTATTTCTTCTT TCTACTCACTAGCTCCCAAATTGGTGATTAATTATTTTCAAGCTCTTAAGTCAAATGAAGAGTCTTTAAGAGACCAGGTT CAGAATCCAATCTTCCATCCATTGCTTCAAATTGATTCATTATACTTGATATTAATCTATTGATCACATTCTCTTTTTAT GCTGGTCAGCTTGAAAAGGCAAAGAAAAAGGAAGCTGCATTAATTGTAACATATGCAAAACGGGAACAAGAGATAGCAGC GTTGAAGGTAGGTAGTTAGTAATATTCTGAGAATGAGGTTCTTGCTCTATATAGCATGTGCATGTGTTATTGTATTTATT TCGCATCTACCAGAAGGCTAGAGAAAATTCCTTTTTCCCCCTAGAGAAAATATACTATGAACAGAATAAAAAAGAAATCT AGGGTGGACTTGGTCTTTCTTTCTTCCTCTTTCACTTACATCTATAACATTAAATAATTATGCAAACAAGGTTTTCTTTA TCCTGCGGTGAGGGGATTAGTCATTGTTGCCGGCGGTAGATACTCTTGTTTGCACCAAAAAAGACTTTCTTTGTCCCAAA AATATTGTTTATACGAGGCTCATAAGGTTTCAATGCTTCTTTAATTGAAGTTGCTATGAAGATTTATAAAATCTGAGTCA TGAATGGTTTAATATCTTTTATGTACTTGGTTGGCATTTAGATAATATTTGCACTGCCCAACAATAAAATTTTGAGAGAG AATATAATAAGGGGAGGGTGTGGTTCTGTTAAAGTTCAAGAAAAATCATGAAAATCTGAAAAGTGTTCTATTCTGTTCTT ACCAATTTAACCTTGTCATATGATTTTTACCTAAGTGTTATCTTGATCAGAAAGTTGAAAGCCACTTGCATTTTACAGAA TTTAATAGTATATATTTTAAATTTTATTTATTGTTTTTAGTTTATAATGCCTAAATCTTTTTCAGTCTGCTGTACGGGAC TTGAAAGCTCAACTCAAGCCAGCATCAATGCAGGTAATCTTTACATTAAGATTGTTTAAGTGTATATCTAGAACACTGTT GATTCTTTGTTCTCATTTGTGCAATAATTGCAGGCAAGGAGGTTGTTACTGGATCCAGCGGTTCATGAAGAGTTCATACG ATTAAAGGTTTGTTCTTCAAGTTTAGTCTTTTATCACATACGGAAGAGGGGATTATGTTTAATAATTTAGGTTCCCCAAG GAAATTGTTCCAGTTGTAGTTTATCACTTGACATTTTGTGAAGAAAGCATTTTTTCAGTGTTACTTCCATCTTTGTTTTT TTATTGGGAGGACTTATTAAGAGATTTTATTACTTTGAACATAACAAAGTGAAATAGAACAAAAACAACCACCACCAAAG CCTTTCCCCATCTATAGGGTCAACAAAATGGTTCAAAGATGTCATAATGTCTTCTATTAGAAAAGAGAAGTAGAGAAGAT AGTAGACAAGCTTCCTAGTTTGAGTATGCAGTTCAGATATACAAAGCACTGGGACAGAAGATAAATTCGAGGCTGGAGGG TGTTATGAAATGTATAAATGGGCTTGTCAGCTGGCATCTAGTAACACTTGCTTTCAAATTTCTGTAATCAATCTAGAGGG TGTTTAATAATGCTTCTCGAATGTGTTTCCCTTTTAGGCAAGTCTAAAGTTGATGCTTATAGCGCAGGTTTATTATATCT TAATTGCTTTTTCTTGTGGCTTAAGATAAATTTATTCTTTTACATTCTTGAAGTTTTAATTTCATTTATATGTTACATGT CCTCATTTCCTTCATACATGAGAAAAATATTTTATTAGTTTATTGACATATCACTTACATTGGTGATTACACCTTTGAGC GTTTCTTACAAGTGTTCTCATCTGATCATCTAGAATTTAGTTGAGGAAAAGGACAAAAAAGTAAAGGAGCTGCAGGATAA CATTGCTGCTGTTAATTTTACTCCCCAAAGCAAGATGGGGAAAATACTCATGGCAAAATGTAGAACCCTGCAAGAGGAAA ATGAGGAGATCGGGAATCAAGCTTCTGAGGGCAAGGTGCTGCTATCTTATTTACTATATGCTACCAATTACCAATTGTCA TTTCCCCTACTTTTAACTCATTCATCTGGGAGTCGGTTTTCTTCCCTTATCCTGCTTTACCATGTTTTTGAATACATATA AGTTAACATGTTGAACTGATTGGGAAAAAAAGTTTGTGGTATATAGTAACTGGAGGTAACATTGAACATATTAACATTTA CACAACTACAAAGCTGAATGTTGCCCAATATAGTTGTTGCTCAATTTGTGCTGATATTGTCTTCTTTTTGCTTCTTTTTT CTTGGTCTGCAGATCCATGACTTGGCAATGAAACTTTCATTGCAGAAATACCAGAATGCAGAACTCAGAAGTCAATTTGA AGGTTAGTTGTTAAGTGATTTCATCGTGTGAAGTTTTGGCATCTTGTAGTTTCTTGTGTCACGTTATCTTATTCATTAAT TAAAGAGGTGTAGTTAATTAATATATATTATGTAGACTGTAACACTGAACACCTGAAGTTGAAAGTAGTATACTTGAGAT ATTGTTATCGGTGAATGTGCTGACATGTTAAATGTTTGCTAGGGAGGAATCCTTGATCTGTTTGTCTATAAGGTTGGAGA CTGGGGGGATTTAAATTTAAAGTGTCATGCAATTGTTACTCTATTGTTATTTCTCCATGCACCAGCAATTTGTGTAATTT TTTATTACAGGTTTGCAGAAGCGTTTGGGTGGATTGACAAATGATGTGGACAGATCCCATGAAACGGTTTTCACTTATCC TTATTTAAATATTTTAATGTTATTTGAAATTTTCACTGCATGTTTTATGTTGCCATTATTCTTTGTTTCTTCTTTACTAA TCAATGTTTAAAAATCTCAACAAAACTTCTATTACATCCAGAATACTGATATGGAATAGATAAACGCTTATGTATATTGA AAAATACACCTTTAGAAAACTGTAATGGATTCCTTCGGATTAACTTGACTGCTTTATTCGTGTTTATTTGTGTATGGTAA TAGCGTGTGTAACCAACTTAAGTGGTTTTTTACTGCAGCTTTTTATGTTGCAAGAGAAATTAGAAGAGAAGAATCAGGAG ATCCAAAGACTGAAAGCTGAGTTGCAACAAGAAAGCTGCATGGAGAACGGGAGCACAGAAGCAGCAGCTAATGGGAAAGA TAATGGTGAGATGATACCTGCGGAAGACGCTAACTAATATCACTAACTAGACTAATAAAATTTTGTCGGGAGCGGTTGAT TCAAGTTTTCATGGATAGTTGTATGTTATTGTGTCAAATGTGCAATTGTGAATGTGCACAAGGACTTATCTCAGTTGTCC ATATGGAATTTAAACGGTCGTTGCTTCTATGGTGCTGGGGATGATGATCATAGCTTTTTAGATATTTATGCCAATACTTT AATAAATTGGAAATTTTGGTTAGAAATGCGTGTGGTTGTCTTGGTAAATCATTGATTACTTGAATTGTCAAGAAATTGTA GTTGTGTGGAGGTGAGATAATGATGACCTGGGCCTGCGTGAGCGGTGTTTGTCTTGTTGGAATTAAGTGTTAGAGTCAAG TCCCACATTGGAGAAATCAAGGTAAGAAGGAGAGTTTATAACCTAATCCCTTAAGGTTTTGGGTTAAGATGTGGTGTCCA AGATCTTCTTGGTGTTTCCCCTCGACCTTGCCCCATAAAGATTTTGTTTTTTCATGAACAATACAGTAAATTAAACATGA AACATGTTAGAAACAAAAAGCTATCCATTTGCTTAACAAGAAACAGTTTACCATTATCTTTAGGCGGTTGACATTTTGCT ATTTATTGAAAGAGATTTAACCGC
CDS sequence (LotjaGi4g1v0230500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCTTCCCCTGCTCAATTCGAAGAACAACAGGAGTTTGATTTTGGCGGCGAAATTGCTGGAGCGCGCTCAGGTAA CAAGAGGTCATCTCCTGAATTTGATGGTGGAGATTTCGATAAGGATCACAAGAAGGTCAAACCGAATGGTGAAGAAGCTT CTTCTGGTGTCACCACTGGAATGATCTTGACTCTCCGTGACAGTCTTCAGAACTGTCAGGATACGCTTGAGGCATGCCAG AATGAACTTGATGCTGCAAGATCTGAGATTCAGAAGTGGCGCACTTCATTTCAGAATGAACCTTTCATACCAGCTGGGGT CCCTCCTGCTCCCAAATTGGTGATTAATTATTTTCAAGCTCTTAAGTCAAATGAAGAGTCTTTAAGAGACCAGCTTGAAA AGGCAAAGAAAAAGGAAGCTGCATTAATTGTAACATATGCAAAACGGGAACAAGAGATAGCAGCGTTGAAGTCTGCTGTA CGGGACTTGAAAGCTCAACTCAAGCCAGCATCAATGCAGGCAAGGAGGTTGTTACTGGATCCAGCGGTTCATGAAGAGTT CATACGATTAAAGAATTTAGTTGAGGAAAAGGACAAAAAAGTAAAGGAGCTGCAGGATAACATTGCTGCTGTTAATTTTA CTCCCCAAAGCAAGATGGGGAAAATACTCATGGCAAAATGTAGAACCCTGCAAGAGGAAAATGAGGAGATCGGGAATCAA GCTTCTGAGGGCAAGATCCATGACTTGGCAATGAAACTTTCATTGCAGAAATACCAGAATGCAGAACTCAGAAGTCAATT TGAAGGTTTGCAGAAGCGTTTGGGTGGATTGACAAATGATGTGGACAGATCCCATGAAACGCTTTTTATGTTGCAAGAGA AATTAGAAGAGAAGAATCAGGAGATCCAAAGACTGAAAGCTGAGTTGCAACAAGAAAGCTGCATGGAGAACGGGAGCACA GAAGCAGCAGCTAATGGGAAAGATAATGGTGAGATGATACCTGCGGAAGACGCTAACTAA
Protein sequence (LotjaGi4g1v0230500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASSPAQFEEQQEFDFGGEIAGARSGNKRSSPEFDGGDFDKDHKKVKPNGEEASSGVTTGMILTLRDSLQNCQDTLEACQ NELDAARSEIQKWRTSFQNEPFIPAGVPPAPKLVINYFQALKSNEESLRDQLEKAKKKEAALIVTYAKREQEIAALKSAV RDLKAQLKPASMQARRLLLDPAVHEEFIRLKNLVEEKDKKVKELQDNIAAVNFTPQSKMGKILMAKCRTLQEENEEIGNQ ASEGKIHDLAMKLSLQKYQNAELRSQFEGLQKRLGGLTNDVDRSHETLFMLQEKLEEKNQEIQRLKAELQQESCMENGST EAAANGKDNGEMIPAEDAN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 58 | 58 | - | – | |
| PANTHER | 3 | 333 | 331 | 1.2E-160 | ||
| PANTHER | 3 | 333 | 331 | 1.2E-160 | – | |
| MobiDBLite | 31 | 50 | 20 | - | – | |
| Coils | 62 | 96 | 35 | - | – | |
| Coils | 118 | 138 | 21 | - | – | |
| Pfam | 135 | 288 | 154 | 2.7E-42 | ||
| Coils | 146 | 166 | 21 | - | – | |
| Coils | 187 | 207 | 21 | - | – | |
| Coils | 260 | 280 | 21 | - | – | |
| Coils | 288 | 315 | 28 | - | – | |
| MobiDBLite | 311 | 339 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of alternative mRNA splicing, via spliceosome | Any process that modulates the frequency, rate or extent of alternative splicing of nuclear mRNAs. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | MRNA methylation | The posttranscriptional addition of methyl groups to specific residues in an mRNA molecule. |
Expression pattern of LotjaGi4g1v0230500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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