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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0230500 |
| Transcript ID | LotjaGi4g1v0230500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FKBP12-interacting protein of 37 kDa; TAIR: AT3G54170.1 FKBP12 interacting protein 37; Swiss-Prot: sp|Q9ZSZ8|FIP37_ARATH FKBP12-interacting protein of 37 kDa; TrEMBL-Plants: tr|I3T8J0|I3T8J0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0230500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:54103553..54107925) extracted from Lotus japonicus Gifu genome v1.2.
CAGTCTTCAGAACTGTCAGGATACGCTTGAGGCATGCCAGGTACGTTTTCCCTTTGACAATGGTGAATGGATGTTGTTTG TTCTGAGAATTTGAACTTATGTTATATAGGGAAGTGGGCTGTGGTTATTATTCATATGATTTAAGTGTTGGATTCGTGTA TGGCTCACATGGAAAATTGGCTTTGTGGTTATTTATTTCTTATGTTACCACTATGAATGCTTTGTTGTAGAATGCTCAAT TGCTTGTAGAACCTACCCATCATAAATTAGAGATTCCTCATAGCTGAGCCTAAGCTGTTTGAGTGGAGTGTCCTTTTTAT TTGAGATTTATGTTTTTTATTTTCATTTTAGAGTTTAGACTATTGATAGCATCTTAAGTTTCTTTTTACTGCCAGCATCA TGCCATTATAATTTTTAAAATTTGTATGATGTGTCTGTGTTGTGTCGTATCATATCTGTCGCATGTCAGTGCTTTGTAGG ACTGCACTCCAAAGTTCCATAGATGGTAGTCTAGATTGATTTGTACCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT TCTTTCTTTCTTTCCTGTGTCATATGGATCCCTGTCCTGTGCTGTATTCTAGGTACCCCAAAGTTCCATATATGAAATTA TAGGTTGATTTATATCTTTTCATTTCCGATGAACGTTTACTGAATTTATGCATATTCTAGAATGAACTTGATGCTGCAAG ATCTGAGATTCAGAAGTGGCGCACTTCATTTCAGAATGAACCTTTCATACCAGCTGGGGTCCCTCCTGGTTAGTTTATAC TTGTTTTATTGCAAATGATACATGTACTAATTGTTCACAATCTAGTTCTGTTTACTGTTGTGTTCTGGGTTTTAAATTTA TATACCTGAGCAATTATTTCTTCTTTCTACTCACTAGCTCCCAAATTGGTGATTAATTATTTTCAAGCTCTTAAGTCAAA TGAAGAGTCTTTAAGAGACCAGGTTCAGAATCCAATCTTCCATCCATTGCTTCAAATTGATTCATTATACTTGATATTAA TCTATTGATCACATTCTCTTTTTATGCTGGTCAGCTTGAAAAGGCAAAGAAAAAGGAAGCTGCATTAATTGTAACATATG CAAAACGGGAACAAGAGATAGCAGCGTTGAAGGTAGGTAGTTAGTAATATTCTGAGAATGAGGTTCTTGCTCTATATAGC ATGTGCATGTGTTATTGTATTTATTTCGCATCTACCAGAAGGCTAGAGAAAATTCCTTTTTCCCCCTAGAGAAAATATAC TATGAACAGAATAAAAAAGAAATCTAGGGTGGACTTGGTCTTTCTTTCTTCCTCTTTCACTTACATCTATAACATTAAAT AATTATGCAAACAAGGTTTTCTTTATCCTGCGGTGAGGGGATTAGTCATTGTTGCCGGCGGTAGATACTCTTGTTTGCAC CAAAAAAGACTTTCTTTGTCCCAAAAATATTGTTTATACGAGGCTCATAAGGTTTCAATGCTTCTTTAATTGAAGTTGCT ATGAAGATTTATAAAATCTGAGTCATGAATGGTTTAATATCTTTTATGTACTTGGTTGGCATTTAGATAATATTTGCACT GCCCAACAATAAAATTTTGAGAGAGAATATAATAAGGGGAGGGTGTGGTTCTGTTAAAGTTCAAGAAAAATCATGAAAAT CTGAAAAGTGTTCTATTCTGTTCTTACCAATTTAACCTTGTCATATGATTTTTACCTAAGTGTTATCTTGATCAGAAAGT TGAAAGCCACTTGCATTTTACAGAATTTAATAGTATATATTTTAAATTTTATTTATTGTTTTTAGTTTATAATGCCTAAA TCTTTTTCAGTCTGCTGTACGGGACTTGAAAGCTCAACTCAAGCCAGCATCAATGCAGGTAATCTTTACATTAAGATTGT TTAAGTGTATATCTAGAACACTGTTGATTCTTTGTTCTCATTTGTGCAATAATTGCAGGCAAGGAGGTTGTTACTGGATC CAGCGGTTCATGAAGAGTTCATACGATTAAAGGTTTGTTCTTCAAGTTTAGTCTTTTATCACATACGGAAGAGGGGATTA TGTTTAATAATTTAGGTTCCCCAAGGAAATTGTTCCAGTTGTAGTTTATCACTTGACATTTTGTGAAGAAAGCATTTTTT CAGTGTTACTTCCATCTTTGTTTTTTTATTGGGAGGACTTATTAAGAGATTTTATTACTTTGAACATAACAAAGTGAAAT AGAACAAAAACAACCACCACCAAAGCCTTTCCCCATCTATAGGGTCAACAAAATGGTTCAAAGATGTCATAATGTCTTCT ATTAGAAAAGAGAAGTAGAGAAGATAGTAGACAAGCTTCCTAGTTTGAGTATGCAGTTCAGATATACAAAGCACTGGGAC AGAAGATAAATTCGAGGCTGGAGGGTGTTATGAAATGTATAAATGGGCTTGTCAGCTGGCATCTAGTAACACTTGCTTTC AAATTTCTGTAATCAATCTAGAGGGTGTTTAATAATGCTTCTCGAATGTGTTTCCCTTTTAGGCAAGTCTAAAGTTGATG CTTATAGCGCAGGTTTATTATATCTTAATTGCTTTTTCTTGTGGCTTAAGATAAATTTATTCTTTTACATTCTTGAAGTT TTAATTTCATTTATATGTTACATGTCCTCATTTCCTTCATACATGAGAAAAATATTTTATTAGTTTATTGACATATCACT TACATTGGTGATTACACCTTTGAGCGTTTCTTACAAGTGTTCTCATCTGATCATCTAGAATTTAGTTGAGGAAAAGGACA AAAAAGTAAAGGAGCTGCAGGATAACATTGCTGCTGTTAATTTTACTCCCCAAAGCAAGATGGGGAAAATACTCATGGCA AAATGTAGAACCCTGCAAGAGGAAAATGAGGAGATCGGGAATCAAGCTTCTGAGGGCAAGGTGCTGCTATCTTATTTACT ATATGCTACCAATTACCAATTGTCATTTCCCCTACTTTTAACTCATTCATCTGGGAGTCGGTTTTCTTCCCTTATCCTGC TTTACCATGTTTTTGAATACATATAAGTTAACATGTTGAACTGATTGGGAAAAAAAGTTTGTGGTATATAGTAACTGGAG GTAACATTGAACATATTAACATTTACACAACTACAAAGCTGAATGTTGCCCAATATAGTTGTTGCTCAATTTGTGCTGAT ATTGTCTTCTTTTTGCTTCTTTTTTCTTGGTCTGCAGATCCATGACTTGGCAATGAAACTTTCATTGCAGAAATACCAGA ATGCAGAACTCAGAAGTCAATTTGAAGGTTAGTTGTTAAGTGATTTCATCGTGTGAAGTTTTGGCATCTTGTAGTTTCTT GTGTCACGTTATCTTATTCATTAATTAAAGAGGTGTAGTTAATTAATATATATTATGTAGACTGTAACACTGAACACCTG AAGTTGAAAGTAGTATACTTGAGATATTGTTATCGGTGAATGTGCTGACATGTTAAATGTTTGCTAGGGAGGAATCCTTG ATCTGTTTGTCTATAAGGTTGGAGACTGGGGGGATTTAAATTTAAAGTGTCATGCAATTGTTACTCTATTGTTATTTCTC CATGCACCAGCAATTTGTGTAATTTTTTATTACAGGTTTGCAGAAGCGTTTGGGTGGATTGACAAATGATGTGGACAGAT CCCATGAAACGGTTTTCACTTATCCTTATTTAAATATTTTAATGTTATTTGAAATTTTCACTGCATGTTTTATGTTGCCA TTATTCTTTGTTTCTTCTTTACTAATCAATGTTTAAAAATCTCAACAAAACTTCTATTACATCCAGAATACTGATATGGA ATAGATAAACGCTTATGTATATTGAAAAATACACCTTTAGAAAACTGTAATGGATTCCTTCGGATTAACTTGACTGCTTT ATTCGTGTTTATTTGTGTATGGTAATAGCGTGTGTAACCAACTTAAGTGGTTTTTTACTGCAGCTTTTTATGTTGCAAGA GAAATTAGAAGAGAAGAATCAGGAGATCCAAAGACTGAAAGCTGAGTTGCAACAAGAAAGCTGCATGGAGAACGGGAGCA CAGAAGCAGCAGCTAATGGGAAAGATAATGGTGAGATGATACCTGCGGAAGACGCTAACTAATATCACTAACTAGACTAA TAAAATTTTGTCGGGAGCGGTTGATTCAAGTTTTCATGGATAGTTGTATGTTATTGTGTCAAATGTGCAATTGTGAATGT GCACAAGGACTTATCTCAGTTGTCCATATGGAATTTAAACGGTCGTTGCTTCTATGGTGCTGGGGATGATGATCATAGCT TTTTAGATATTTATGCCAATACTTTAATAAATTGGAAATTTTGGTTAGAAATG
CDS sequence (LotjaGi4g1v0230500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGGCAAGGAGGTTGTTACTGGATCCAGCGGTTCATGAAGAGTTCATACGATTAAAGAATTTAGTTGAGGAAAAGGA CAAAAAAGTAAAGGAGCTGCAGGATAACATTGCTGCTGTTAATTTTACTCCCCAAAGCAAGATGGGGAAAATACTCATGG CAAAATGTAGAACCCTGCAAGAGGAAAATGAGGAGATCGGGAATCAAGCTTCTGAGGGCAAGATCCATGACTTGGCAATG AAACTTTCATTGCAGAAATACCAGAATGCAGAACTCAGAAGTCAATTTGAAGGTTTGCAGAAGCGTTTGGGTGGATTGAC AAATGATGTGGACAGATCCCATGAAACGCTTTTTATGTTGCAAGAGAAATTAGAAGAGAAGAATCAGGAGATCCAAAGAC TGAAAGCTGAGTTGCAACAAGAAAGCTGCATGGAGAACGGGAGCACAGAAGCAGCAGCTAATGGGAAAGATAATGGTGAG ATGATACCTGCGGAAGACGCTAACTAA
Protein sequence (LotjaGi4g1v0230500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQARRLLLDPAVHEEFIRLKNLVEEKDKKVKELQDNIAAVNFTPQSKMGKILMAKCRTLQEENEEIGNQASEGKIHDLAM KLSLQKYQNAELRSQFEGLQKRLGGLTNDVDRSHETLFMLQEKLEEKNQEIQRLKAELQQESCMENGSTEAAANGKDNGE MIPAEDAN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 162 | 162 | 1.2E-80 | – | |
| PANTHER | 1 | 162 | 162 | 1.2E-80 | ||
| Pfam | 2 | 117 | 116 | 7.5E-34 | ||
| Coils | 16 | 36 | 21 | - | – | |
| Coils | 89 | 109 | 21 | - | – | |
| Coils | 117 | 144 | 28 | - | – | |
| MobiDBLite | 140 | 168 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of alternative mRNA splicing, via spliceosome | Any process that modulates the frequency, rate or extent of alternative splicing of nuclear mRNAs. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | MRNA methylation | The posttranscriptional addition of methyl groups to specific residues in an mRNA molecule. |
Expression pattern of LotjaGi4g1v0230500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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