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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0233100 |
| Transcript ID | LotjaGi4g1v0233100.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transducin/WD40 repeat protein; TAIR: AT5G16750.1 Transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q2KJJ5|TBL3_BOVIN Transducin beta-like protein 3; TrEMBL-Plants: tr|A0A0R0JZQ4|A0A0R0JZQ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0233100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:54422801..54428704) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAGGCTCTTCGGTTGAAATCAAACTACCGTTGCGTTCCAGCTCTACAGCAGTTCTACACCGGCGGCCCCTATGTAGT CTCCTCCGACGGCTCCTTCATCGCATGTGCATGTGGCGAATCCATCAAAATCGTTGATTCCGCCAACGCATCCATCAGGT CCACCCTTCAAGGCGACTCGGAGTCCGTCACCGCATTGGCTCTCTCCCCTGACGATAACCTCCTCTTCTCATCCGGCCAC AGCCGCCAAATCCGAGTTTGGGATCTGTCCACCCTCAAATGTGTCCGCTCCTGGAAGGTAGCTCAATTTTATATAATAAT AATTAGGTTTATCAAATTTAGATTCAATTGTGTAAGGTTAATGTTACTGATATTGTATGAATGATGGCACTGGTGTAGGG TCATGAAGGTCCTGTGATGTGTATGTCGTGTCACCCTTCTGGGGGGTTACTGGCTACCGGGGGAGCTGATAGGAAAGTCC TTGTCTGGGATGTGGATGGTGGCTACTGCACTCATTTCTTTAAAGGTCATGGTGGAGTTGTTTCTTGTGTTATGTTCCAT CCGGACCCGGAGAAACAGCTCGTGAGTCTCAAACTTCGTACTTTTAGTTTTTCGCACTATGACAGTGTATATTTTTGTAA TAGTAGTGTTAACTAATTGATGGGTTCATACAGAGCGGATTAAATGACAATCACAGATTGTTGTTATTTTAGCCACGTTT TAAAATCTGACTTTAATTGAAAAAGGGGCAAACTTACCCTCCTAATTTTTCTGATGGTAAAGTCTAAAACGACACGGCAT GTGGTATGGACTATCAAGTTTTTGATATTTTGACCATTCAGTATACTGAGTAGAGTGATGAATGATGGCTGGGAGTGGGG GAATGCAAGTTTGATTAATGGTGATGTAATATGACCTTTTCATTTGGGTATGTTTTCTACCAATTTTATATTACTATTCA TGATTGTTGAAGTACAAGAAGATGGAAGTTAACTGAACATCAGAAGGGGGAAGGGTTTAATTTAATAACCTTCAAATTAC ACAATTGATAGGACTGTTTGTTTCTAATCCTTTTAATGCAAATTTGAAATTTTTTTATTGTTACCCCATTTGTTGTTTTC AGCCATTGCAAAGTGTTGATTAATGATTCCAACTTTCTTCATATGTTTAACTGATTATGATGAGGTTGGTGCCTGCAGCT TTTTTCTGGGAGTGATGATGGTGGTGATCATGCAACTGTAAAGGTTTGGGATATCTCCAAGACCAAGAGAAAGAACTGCA TTGCATCACTAGATAATCATCGTTCAGCAGTGACTTCAATGGCAGTATCTGAAGATGGATGGACATTGCTTAGTGCTGGA AGAGATAAGGCAGGCTCTATAAGGCTCTGTCTTACCTTTTTTTCTTGTTAATTTACCCTTGATACTAGTTCTGCATCATG AGCTTATTCTTTATTCTCTTTTATTTATTTATTCCCTTTTGGATTTTGTGTAAGTTTCTTCACTTTTCTTTGGGACTTAA GCAGCATAATTGAAGTTTTAAAAACTCCTGAATATTAAGTGCTTTTAACATTTATTTATTTATTATTATTATTATTATTA TTATTATTATTTTTAATTTCAAGTGAGACGGACCATACATTACATGCTGCATGATTTATCTGGAAGAGATTTTAATTAGT ATGCCGAAGTTGTAACAAATGAAGTCTACTAAATTGACAAACTAGTGTGAATTTTTATTGGTAGGTTGTAAGTGTGTGGG ATCTTCATGATTATAGCAATAAGAAGACTGTCATCACAAATGAGGCCGTTGAAGCTGTTTGTGTAATTGGTGCTGGGAAT CCTTTTGCTTCATCTCTGGATTCATATCGGAAAAATGCAAAAAAGCATGCTAGTTCCCAAGCTTTATATTTCGTTACAGT TGGTGAACGGGGAATTGTGCGCATATGGTGTTCTGAAAGGTAATATATACGGATTTTTTGTTAGTTGATATTTTGAATTC AATATCATTATGCCCTAGTTAGACTTAGTTAATAATAGTAGAGTAAATGTTTTTAGGCGGGTATGCTAGGAGAGTTTAAA GCTTGGATTTAATTTTGTCATTGGGTATTGATTCTAATGGAGGCAGCTTGTAAATAATCTGACACTCTGAAATATGATGT AAATACTCTATAACAATAAAATATTTGTTGCTGTGCATTCCCTCATTAGTTTTTTTTTGTTAACAGTGCAGTTTGCATAT TTGAGCAAAAGGCTTCAGATGTTACAGCTAGCATAGATGAGGATGGCTCACAAAGGGGTTTTACTTCTGCTGTTATGGTC ACCTCAAAACAAGAATTGCTTTGTGTGACTGCAGATCAGCAGTTTTTGTATTACACTCTTGAATACACTGAAGAATTGTT AAAATTAACTCTAACCAAAAGACTTGTGGGATATAATGAAGAAGTTATAGACATGAAGTTTATTGGGGATGATGAAAAGT TCCTTGCTCTTGCTACAAATCTTGAACAGGTACGAAAATTTGTATTTAATCCAGAAATCTGAAACTGTTGTGATTCAAGT GGAATGTTATTTTTTTTTACAAACCAATTAATTTGAACATATCAATACTGAAAAAGGCTACTGCTGGATATTGTTTTCAT TTAGTTGATTATTTTTGCAGTGTTCGTCCTTGTCACTTCACTCAAATATTGATTTAGTTTGTTCTTGAAATAAACGTACT TACTACCTAGTGCTGAATACAGCATTTTTCATGATCCATTTCTCTTTTTATATGGATTGAAAATAATGCTATGCATTCCC TGAAAATAACTTTTTATTGCTTTCATAGTTTTTTGTGTAAAACACTGAAAATAGGAAACAGTGAAAACAATGTGGTGCTT TTGTAATTAAAATTCTAAACAGAAAATGGAATAAAAAATGAAAATGGAAACCAAACATGAGTTTTTCTAGAATTTTTTAT GGATAAGAATATTTGGTCGGTAGATTCCATTTGTAGATATTTTTCATTTTGTAATTGATTTCCTCAACTTTTGAAATAAG ACCATTTTGGAATTCTTCAATTCACAAAGGCAATGAGGTGTATTCATCTCTAAGATATTCACGATGATAAGATGTTGTCA TGGTCTTATTTATGCTTTTGCTTTGGTGAGTGATGACATGTGAAAAGCTTAATGGTTTTTTAGCTGGTTTTTCATTTGAA AGGCATAGAGTGAGAAGTGCTTTTGGAATTTCCATTTCTAATTATGGTGTTGTCGTCACCATAACTTTTTACAGTATTTC ATAATCTTCTATATAGATAAGGCAATCAACATGTTCTATATTAATTCAAATATTTTCTAATCATACCTTCTTAAATCTTA GTTCTTAGTGAATCTAGTATCATTGAAAAAGGTAAGAATAAGAACAGGAAAAAGGAATAAAATTGGATCCTTAATCACTA ATTTGTTTCAAAGACTTGCATAATACTATACAGGCAAACTATATGTCCTAATTTTTTGTACTAGTTAAAAGAAAAATAAA ATAAAATCACAGTCAATTGTATGGTGCAACGATTTGCATAGTATCACACAAACAAACTAAATGTCCTATTTTTTTTTATC TTGTACTATTACAGTTTGTCAAATTAAATGTGTACAGATATCATCAAAAAATTAAAAGTAAACATTGACACTCCAGTTAT TGGGATTTGGATGATTGATGAGTGTGAAAAGTTCAGCCCTTGATTCACCACCCTTCAATTTGTATGGATTTGCGTCCACC AAGAGTAGTGTTTAAGGTTTAGGTTTTTAATGTAATACTCCATTGAATCTTTGCAGGTTCGGGTTTATGACCTTGCATCT ATGTCATGTTCCTATGTCTTATCTGGACATACTGAAATTGTTCTGTGCCTTGACACCTGTGTTTCAAGTTCTGGGAGAAC ACTGATTGTAACTGGAAGTAAAGACAACAGTGTAAGTTTTTTCCTCTTTGGTGTCATTTAATACTTTGGATTTTCTTCTA TGGGAATTAATGCTTGTGGTGCACCAGTTCAATGTGTTATCTCTATCAAGTTCATAGTATGCTAATAGTGCAATGTATTG AAGTCTTATGTATAGGAATCAGAAATTACATGACAAATGTCGGCTTGCTGTATAGGTTAGGTTGTGGGATTCAGAAAGTA CAAGTTGCGTCGGAGTTGGTATAGGTCACATGGGAGCTGTTGGAGCCATTGCCTTTTCAAAAAGAAAGCGAGACTTCTTT GTTAGTGGTAGCAGGTTTGTATTGACGCATTTGATACTATTTTTATCCTTCATTTTTAATTCCTTTATCTTGGCTGTTCT TATGCACTCTATTAATGCCACAAAACAATTACTATAAAGTATAAACTTAAAAAGAACATAAAAATTGTAACGAGAGATGA GTTAGGCCTAGGGGTTAAATCTATTCTCAAGTGATATAATGTTACAAAGGAGGCAGTGAGTAAGTTATATCACTATCACT GCTATTATATTGATTTTCAAGATAGCATTCAATTTAGCTCCAATTATGATAATTGTTCGAGTAGATATGATAACAGCATT TTTGAGAACCTTTTGCTGTTAAGGTTGATTGTGGTCTGTTTCACTGTTCTGCAACAGTGATAATGTGATTTTACATATTA GTAATGTCATGGTCGAACTTATATGTGGTGTTGTCTAGTTTGGTTAAAGGTAATGGAAGTGGAAATTCCTGCAAATTTCA TTTGGTTACTAGTTTTATTGAATTGACCTCAGCTTGTCTCTGCAATAACATTGATATAATAAACTTTGTGCTGACTTTAA TCTTGAGTATCTTCCCTTTCTATGTTCTTCACTCAACTATGCTAGGTATCTGCATTTATCTCTCAGCAAGATATTCTGCT ACCAAGGGATCATTTACCCCGAACATAGAATTTGACTTCCCTGTTCTTTCTTTTATATGAACTGAATGTTTTAATTTGTT AAAGTGTTTGCTGTTGAATCCTTTGGTCATAAACTTGCTAGCTTTTGGATGATACTATTCAGATTTATTTCTGATCAATC TTTGTCAATGTTGATCAGTGATCATACTCTTAAGGTGTGGAGTATGGATGGTCTCTCAGACAATATGACAGAGCCAACAA ATTTAAAAGCAAAAGCGGTTGTCGCAGCTCATGACAAAGATATCAATTCTATAGCTGTTGCTCCTAATGATAGTTTAGTA TGTAGTGGTTCTCAGGTTGGTATTATGTATGACCTGCTGCTTTCTTGGGCCTTTTAAATCAACTTATCTAATTATTTAAA AGAAATATTTTCATCTTAGTTGTCTATTTCTTACTATGGTTTTGTCCTGAGTGAGACTACTGAGTACTGACACTGGCTTC TCTCTTTCACCGTTTCTTTTTTTTGAATAATTATAGAATTTTCAGTAGTTAACTATTATTTATTTATTATCTGTATCCAA TCAGGATCGCACGGCTTGTGTTTGGAGACTTCCAGATCTTGTATCAGTAGTTGTATTTAAAGGGCACAAAAGAGGAATCT GGTCTGTAGAATTTTCTCCTGTTGATCAATGTGTTGTAACAGCATCTGGTGATAAGACAATAAGAATATGGGCTATATCC GATGGTTCATGTTTGAAGACATTTGAAGGACACACTTCAAGTGTACTAAGAGCGTTGTTTGTTACTCGTGGGACACAAAT CGTGTCATGTGGTAAGAGGCTATTTGTAGCTCATTATTTTTTTCATTTCTAGCAGTTTGATCGATGTGTGATTAACACTC AATATTTCAGGTGCTGATGGTTTAGTCAAGCTGTGGACCGTAAAAACTAATGAATGTGTTGCCACACATGATCAGCATGA AGACAAGGTAACCATTGATCCTTAATTATGCTCCTCATTTTCTTTTGATTTTTTTTAATCTTGA
CDS sequence (LotjaGi4g1v0233100.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGCTCTTCGGTTGAAATCAAACTACCGTTGCGTTCCAGCTCTACAGCAGTTCTACACCGGCGGCCCCTATGTAGT CTCCTCCGACGGCTCCTTCATCGCATGTGCATGTGGCGAATCCATCAAAATCGTTGATTCCGCCAACGCATCCATCAGGT CCACCCTTCAAGGCGACTCGGAGTCCGTCACCGCATTGGCTCTCTCCCCTGACGATAACCTCCTCTTCTCATCCGGCCAC AGCCGCCAAATCCGAGTTTGGGATCTGTCCACCCTCAAATGTGTCCGCTCCTGGAAGGGTCATGAAGGTCCTGTGATGTG TATGTCGTGTCACCCTTCTGGGGGGTTACTGGCTACCGGGGGAGCTGATAGGAAAGTCCTTGTCTGGGATGTGGATGGTG GCTACTGCACTCATTTCTTTAAAGGTCATGGTGGAGTTGTTTCTTGTGTTATGTTCCATCCGGACCCGGAGAAACAGCTC CTTTTTTCTTTTTTTTTTGTTAACAGTGCAGTTTGCATATTTGAGCAAAAGGCTTCAGATGTTACAGCTAGCATAGATGA GGATGGCTCACAAAGGGGTTTTACTTCTGCTGTTATGGTCACCTCAAAACAAGAATTGCTTTGTGTGACTGCAGATCAGC AGTTTTTGTATTACACTCTTGAATACACTGAAGAATTGTTAAAATTAACTCTAACCAAAAGACTTGTGGGATATAATGAA GAAGTTATAGACATGAAGTTTATTGGGGATGATGAAAAGTTCCTTGCTCTTGCTACAAATCTTGAACAGGTTCGGGTTTA TGACCTTGCATCTATGTCATGTTCCTATGTCTTATCTGGACATACTGAAATTGTTCTGTGCCTTGACACCTGTGTTTCAA GTTCTGGGAGAACACTGATTGTAACTGGAAGTAAAGACAACAGTGTTAGGTTGTGGGATTCAGAAAGTACAAGTTGCGTC GGAGTTGGTATAGGTCACATGGGAGCTGTTGGAGCCATTGCCTTTTCAAAAAGAAAGCGAGACTTCTTTGTTAGTGGTAG CAGTGATCATACTCTTAAGGTGTGGAGTATGGATGGTCTCTCAGACAATATGACAGAGCCAACAAATTTAAAAGCAAAAG CGGTTGTCGCAGCTCATGACAAAGATATCAATTCTATAGCTGTTGCTCCTAATGATAGTTTAGTATGTAGTGGTTCTCAG GATCGCACGGCTTGTGTTTGGAGACTTCCAGATCTTGTATCAGTAGTTGTATTTAAAGGGCACAAAAGAGGAATCTGGTC TGTAGAATTTTCTCCTGTTGATCAATGTGTTGTAACAGCATCTGGTGATAAGACAATAAGAATATGGGCTATATCCGATG GTTCATGTTTGAAGACATTTGAAGGACACACTTCAAGTGTACTAAGAGCGTTGTTTGTTACTCGTGGGACACAAATCGTG TCATGTGGTGCTGATGGTTTAGTCAAGCTGTGGACCGTAAAAACTAATGAATGTGTTGCCACACATGATCAGCATGAAGA CAAGGTAACCATTGATCCTTAA
Protein sequence (LotjaGi4g1v0233100.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEALRLKSNYRCVPALQQFYTGGPYVVSSDGSFIACACGESIKIVDSANASIRSTLQGDSESVTALALSPDDNLLFSSGH SRQIRVWDLSTLKCVRSWKGHEGPVMCMSCHPSGGLLATGGADRKVLVWDVDGGYCTHFFKGHGGVVSCVMFHPDPEKQL LFSFFFVNSAVCIFEQKASDVTASIDEDGSQRGFTSAVMVTSKQELLCVTADQQFLYYTLEYTEELLKLTLTKRLVGYNE EVIDMKFIGDDEKFLALATNLEQVRVYDLASMSCSYVLSGHTEIVLCLDTCVSSSGRTLIVTGSKDNSVRLWDSESTSCV GVGIGHMGAVGAIAFSKRKRDFFVSGSSDHTLKVWSMDGLSDNMTEPTNLKAKAVVAAHDKDINSIAVAPNDSLVCSGSQ DRTACVWRLPDLVSVVVFKGHKRGIWSVEFSPVDQCVVTASGDKTIRIWAISDGSCLKTFEGHTSSVLRALFVTRGTQIV SCGADGLVKLWTVKTNECVATHDQHEDKVTIDP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 163 | 160 | 1.8E-205 | – | |
| PANTHER | 4 | 163 | 160 | 1.8E-205 | – | |
| Gene3D | 24 | 165 | 142 | 9.1E-37 | ||
| SUPERFAMILY | 27 | 289 | 263 | 2.15E-48 | ||
| SMART | 49 | 88 | 40 | 2.2E-7 | ||
| Pfam | 55 | 88 | 34 | 3.4E-4 | ||
| ProSiteProfiles | 56 | 513 | 458 | 67.177 | ||
| ProSiteProfiles | 56 | 97 | 42 | 14.686 | ||
| SMART | 91 | 130 | 40 | 4.4E-12 | ||
| Pfam | 93 | 130 | 38 | 5.7E-8 | ||
| CDD | 94 | 491 | 398 | 4.56024E-57 | – | |
| ProSiteProfiles | 98 | 139 | 42 | 13.55 | ||
| ProSitePatterns | 117 | 131 | 15 | - | ||
| PRINTS | 117 | 131 | 15 | 1.5E-7 | ||
| SMART | 133 | 175 | 43 | 12.0 | ||
| PANTHER | 167 | 509 | 343 | 1.8E-205 | – | |
| PANTHER | 167 | 509 | 343 | 1.8E-205 | – | |
| Gene3D | 169 | 364 | 196 | 1.4E-28 | ||
| SUPERFAMILY | 226 | 510 | 285 | 1.28E-64 | ||
| SMART | 228 | 268 | 41 | 25.0 | ||
| SMART | 271 | 313 | 43 | 2.6E-6 | ||
| Pfam | 273 | 313 | 41 | 1.9E-6 | ||
| ProSiteProfiles | 278 | 322 | 45 | 11.511 | ||
| ProSitePatterns | 300 | 314 | 15 | - | ||
| PRINTS | 300 | 314 | 15 | 1.5E-7 | ||
| SMART | 316 | 356 | 41 | 1.2E-5 | ||
| Pfam | 318 | 356 | 39 | 0.0053 | ||
| ProSiteProfiles | 323 | 365 | 43 | 11.143 | ||
| PRINTS | 343 | 357 | 15 | 1.5E-7 | ||
| Gene3D | 365 | 511 | 147 | 6.2E-41 | ||
| SMART | 369 | 408 | 40 | 4.0E-6 | ||
| ProSiteProfiles | 376 | 409 | 34 | 11.645 | ||
| Pfam | 377 | 407 | 31 | 2.6E-4 | ||
| SMART | 411 | 450 | 40 | 4.0E-8 | ||
| Pfam | 417 | 449 | 33 | 1.2E-5 | ||
| ProSiteProfiles | 418 | 459 | 42 | 15.12 | ||
| SMART | 453 | 492 | 40 | 3.2E-7 | ||
| Pfam | 454 | 491 | 38 | 1.3E-4 | ||
| ProSiteProfiles | 460 | 501 | 42 | 13.015 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0233100.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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