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LotjaGi4g1v0237600.1

Overview

Field Value
Gene ID LotjaGi4g1v0237600
Transcript ID LotjaGi4g1v0237600.1
Lotus japonicus genome version Gifu v1.2
Description Ribosomal RNA small subunit methyltransferase G; TAIR: AT5G50110.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp|Q67J35|RSMG_SYMTH Ribosomal RNA small subunit methyltransferase G; TrEMBL-Plants: tr|I1JZW8|I1JZW8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0237600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:55292332..55299288) extracted from Lotus japonicus Gifu genome v1.2.

GGAAAAATCAGGAAATCACCATCCCAAGCCTTATTGACTACCAAAAGTGGTGTGGAGTTGTAAAAGCGCGCCGTGGTGGG AGATGGTTTTGAACTTGCAGTTTTCTCCGGGGACTTTCATCAAACACCTCACGTCCCGAAAATTCACAACACACTGTTTG CACAAATCCTCCACACCCTCCCTCTCCCACTTCGGAACCCTAACCTCTCGCCAGAAAGACCAGATTCATCTCTACGTCGA CGCTCTTCTTCAATGGAACAAGGTACATTCACTCTCTCTCTCTCCCTCAATCTCCATTGACACTGACTTCGTTGCGTATT GTAACTGCAATTGCAGCGTATGAATCTGACAGCAGTTCGAGAAGTGAACCAAGTCATGGAAAGGCACGTGGAGGATTCGC TTGCGATTTTACCTCCGTTGAGCGACTGTTACCGCGCGCACTGCGGTGGTTCTGGCGATAAGCTCAGCCTTGTTGATGTC GGAACCGGCGCGGGCCTCCCCGGAGTAGTTTTGGCCATAGCTCGTCCAGGTGAATTACTCATATGTAAACTGTAATGTAG TATTGTTCAGTGGAGTTTCCTTGTTTTGAGTTTTGACTTGTGATTTGATTGAATAGAATGGGATGTGACGCTGCTCGAGT CTATGAACAAGCGATGCGTCTTCTTGGAGCATGTTGTTAGTGTTGTAGGTTCCTCCAACATTCAAGTTGTAAGAGGAAGA GCTGAGGTAAAATGTGCACTAACTCCATTTTGATAAGAATTTTCATTATTCTCATGCCTGAAAATTTGTTTGTTATGTGC ATAGGACAGAGTTTGGGGCAGAATCCTCGCTTCAGAGAGCAATTTGACGTAGCGGTAGCCAGGGCAGTTGCAGAGATGAG AATATTAGGTACTACTATTGACTATTGAGGACTTCCTGGTTTAATTTTTCATTGCTTCGATAGATACTCAGTGATTTGTT TCTGGTTTGGTGTTTGATTCTTGTTATTTAATTTCCAGCTGAGTATTGTGTTCCATTTGTTCGAGTGGGTGGGTTGTTTG TTGCTGCCAAGGGTCATGATCCTGAGGTATGTAATTTCAAGTCCTTTATCTTCTGTTGATTCATATATCATGTATTCATT GATGGTTTGCCTGTTGCTTTCCTCAAGAAATGTCAGACAATGTTAATTCTTAATTGTATCTGTCGTACTAAGTCTTAATC TGATTTGCATTTCATTGGTGTTGGTCGTGTCCTTATACTGAGAAACCCACTAGCTTGGTTCTGTTCAGTAGATTGCAATT GAATTATATTGAAGGAAAACTTTTTGGCCTTGCGCTGACCCTTTAGGAATAACCACGTTTCAAGCTTGTATTCTGCCCGG ATATCCTCTAGTTTGAATTCACTTTCAGGGTGTAGTTCTGATATGATAGTGCCCTGGGAGGGAATCTATGGGCTAGCTGC CTGGGAGACAGTCAGAGTTTGCAAGTATTAAGATTTCACCCAGTGTTATTAAATTCTTGTAAATAGTTTGACCTGAATAT AATATTGAGAAAAGAGAAAAAGTTAGAAGCTGATTTTTATCCCCCTGAAAGAAAAGTAGAGTTAAGAAGCCAAACCGCTG GTTACATCATTAAGACGTGAACCTGTCCATTTTGTGGTCTGTCCATCCTCTCAAGCTACTAATTTGAAATTTAGTCTTTG AACCACTGAATTGGTTGCATACTGTCCTGAACTGCATTCAGTTTAATTGATATCTGGTTCAAGCTTTATTTCTCCAAACA AATACTAAATGTTCTCCGCTGAGTATTGAACTTTGATCATTTTGCATGATTAAAATTTAAAATCTCCTGTCTTACTTATG TGTCTCCTTTTTTCTTGTTCCTCCAGTTGAAAAGTGATCCTTCAACAAAACAAAACAAAAACTCTTTAAGTGGCAACCAA CATTTCTCTTAGTTTCTTTCTAGTTCTCCGTATGTGTCATTTTTCAAATGAAGGGTCAGGGAGGGAGACAGGAAAAAGGA TAGATAATTTCCCATCAAGGATTTGAGATAATTGGGCCATGCTTTTTACCGTTGTTATTTGCTTTGAATTTTTTTATAAT ATTGCATCCTGAAGTATATTTCTCACTAGATACATTTTGTTTAAGTTCATATCAAATCATGTTGAATTATAATGTGGCTT TTCTATACAATCTCATGGATTTGAACTTTGAACCATCTATTGATTTCCTGTGGGATGAATTCGGATAGGATGAAGTTAAG AAAGCTGAAAGCGCCATCCAGAAGCTGGGTGCATCTCTATTGCAAGTACAATCAGGTACACAGCTTTAAACTTCAATCAT GCGATATAGACTTTTGTTGGAGTTTTTTGTTGTTGATATTTTCTGAGATGAACTTGCATTTTTTGTATCTGTATATTCTC AGTGAAGTGAGATCTAAACCTTCCATGTCAGATAGTGCTAACCATCATATAAAGTGATTAAATTTATACAAGCTAAATCA TGTAAATTGATTAACTTTATACAAGTGAATCTGTTAAATCAAATTTCAAGTATTTCATTTCCCCTCGCTCTATTCAGTTG AATGTTCTGGTGCTTAGCAAGTGATGGCTCTTTTTTCTACTAGAAAAACTGTAGGGGGGGTTTAACACTTTAACTCCCTG CCCTATGGGTATGGTCTTCCACAGTTTTTCTAGAAACAGTTATTAATCTTGGCTATACCATTATGTTCATGATTTTGTAG AAGAGTTTGTATTTGTTTTGTTACTTTTGTATTTATTTATCTTCAGTGGATGAGCTAGCTTATTGAAGTAACTTTATGTT GATGTTGTCATGTCCAGTGGAATCGCAAAGCCCATATGGTCAGCGAACTGCTGTCATATGTCTAAAGGATCATCCCACAC CGATGAAATATCCCCGTGATCCAGGTACACCAGCTAAAGAACCGTTGTAAGTTAGATGCTCATTCTGTTGGCTGTATTTT ATCATTCTTTATCCTCAATCCTCCCATCTATCTTTACCAATGTCTGAGAAGACCCTATATAGAACAAGCTTTTGTAAGTA CCTGCTGTTATGACTGTAAAATTTATCTTCCTGTAATGTTACTGTACATGCATATAGACAAAGCTTTACAATATGTAATG CATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATATAGACAGGGAAAGTATGCGTT CATTGCATATTTGCGTTGTGTAATATAGTGCCTAAAGCCAAAATCAAATGAGAAAAATTGATGTGCCCCATGAGATTACA ATATGAAACTTTTGCCTTATCATGCATAGGATTGTGTGCACACGTGTAACCATAGTCGCCTAATATATGAATTATGTTCT AAACTTCTAATCAATTATCACAATTTTGAAAGGGAAAAAAAATACTCGACAATATACAATTAAAAGTAAGTTACTATTAT ACAATTGAAAAATGTTGAAAAGTCATTACTGTGCAATTGTTTTGAAAATGTTAGTATTGGTTTGGTTGACATTGTTATCT GCTTGCATCATGTTTTTGACGACCATCTTTTTCATTCTCCCTGACATAAAACTACATTTTTGTCGGCAAAAATATTGACT AAATATTTTAAATTCATCTATACGAAAAGATAACAATGTACAAAATCAATAAAGTGTTCATCTAATGGTAAGCAAACTAG TCTCTTCTAAGGATGAACGAAAAGTTTATTTAGAACATGTAACTGTTTTCTGAATGAGTGACGATATACGTTGGAGATAA AAAAAAAATGAGAACACTGGACAAAGTAATTAGTTCTGGAGATGGCAACATGGGATAATCAACGAAGATGGGATATTGAG TAGATGGGGCAAGTAATAAACAGAAATAGAGGTCTTTGGGGGCAGTTGTGTGAAGGAGAACACCATACTAGGGGCATGAA AAGTGGGGAACGATAAGGGTATGAGTAGAAAGAGCCAAAATGCTTCAGCATAAGTATTTACCATATCAAAGAAAGATTGC AAATTTTGTATGAATTTGAAAACCCACTCCAAGTAATGTTTTACCCAACAAGCTCAATTATCCTACTCAAGAGTTACTGG AAATAATAAACACTCACTCATATGAGATTACTAAACTTGCTCACTGCTCTTGAACTTGAGATGTCACAATTCTCCTTCAT TTAGTAGTGGTGAGTGACTTTTCCTGAAAGCTAATTAATTACTTTTCTCATTTGTAAGACTTTTAATTCTTCATTTCTCT TTCGGATCTTCATTTTTTCTTCCAAATCTTTCCAATATTCCTGGATATGAATGAAAGCCCATCATCACCGTTTGATTCTT CTTCTAATTCTTCATACTTCTTCAAAGATTCTTAAGCATCGACTGTCCACTTTGAGAGCAATGGATTTTCCTTTTCTTCC ATTGTCCTTCTCATTGAACTCTAATGCATCTTCAAGTAACCAAAAATTGTCAAGTTTCGTTATGAGATCTCAAGGATATC AAGGAGTTTCAAATTCTAATCATTGTTTAAAGCTTTTTTTTTTTTTTTTGAAACTGTTTAAAGCTTTTCTAACCCAAGTT TTTTTTTTCTTCTGTAAACTAAACAAAGTAAGAGTATATCAATATTAAAATTTTAATGAATTAAAATGGCGATGTATATC CTCTGATTCTTCCTTTTTAACTTCACTCAACCTTTACAATGGAGTCTTGCATGGACTCTCTTTACACTCTTTGAGCCCAC TCTTGTTGAGCTCTGACTTGGCCCTTTTTGAATTTTGAAGCTTTGCTCCGTTAACAAAAAAAATAACATGATGAGATAGT CAGAACTCAGAATAGACACAAATTCAATATGAATATACATTTGTATAGTAATGAAGGTTACTTCTTAATACAAACTGTAT CTTTCTTTCAATATAGGAATGAAGAATCCTCAGATTACTTAACGAATTAGTTTTATAAATCCGAGGTTGGTAAAAGAATC CAAATAGGAAGGTTGAAGATAGATGGAGAAAAGCCCAACATCCTACCAAATCCCCTGAAATAATAGTAAAAAGTTGATGA GCTTATAGAACAGGAACAAAAATCTGCCAAACCTTAATATCACAGTCCAAACTGCCACTATAAACAAGATAAGAAGCTTC CGACGAGTCACAACGATCAACCACTGCACTTAGGCTCTTAACCGGACCCCTATGCCCTTCCAAAACACCTAAACAACAAT ACTCATTCCCTTCACCTCTCCAAATCCTTATCGTTTTATCCTCAGAACCGCTGCAAATCAAATTCTCAACCACAGCCAAA CACAGTATAGACCTCGTGTGCCCCCTAAGCGCACCCACCACGACCAACTCACCATTTTCACCCTTTTCCGACACCAATAT CGACCTGTCACATGCACCAGAATACAACACAGAGCCATCACTGCTTAGAGCCAGAGCATTGATCCCAGAGTTGTGTTTCT CCAAGGTGTCCAACAAACTGTGTTTCTTTTCTCCTTCCTTTTTCTTCCACACCTTGATCCTCTTATCAGCTGATCCAGTG TAAACGTGCCCATCATCTGAAACTGCAACCGCGTTTACAGCATCATCGTGGGCATTAGAAACTGATTCCAAGCAGGTGAA GTCTCTGGTTCGCCAAATCTTGATTGTTCTGTCCCATGAAACAGAGTACAGCAAGGTCCCGTCCTTGGATATAGCCATAG CAGACACGGTGTCAACATGGTGAACCCAGGTGCATTTTTTGTGCCTCCGTACCTGAACGTGGTTCTTGGGTATCAGCATC TTCGAGACACGGTCGTTGAACGTTGGAAGCGTGGCTAAAAGTGTTTGCTTTTGTTGTTTGCTCTGTTTCTGTTCGTTGTT GTTGTCGGTGATTTTCCAGACGCGGATTTTGTGGTCCTGGTGAGCAGTGAAGAGCTTGTCGGAGTGAAATACTATTGATT TTACAGCACCCTTTCCTGCAAGAACGAGTGAATGTTGTTGAGGGTCGAGTTGGGCACGGTTGAAGGATCTGATTTCTCTG TCGGAGGAACCGGTGTAGAGGAACTTGCCGGTGAGGGTGAGGGAAGATGTGTAGGATGATGATGATTGGCCTTTGAGAGT TGTGAGGCAGTTGTAGGAGGAGGTTTGGGAAGGGTTGAGGAGATTGGAGAATGAGGAGTTAAGGGAAGGGATTGATGCGA GGCTGCGTTGTGAAGACAGAGACCTTGAGTTGTGGTCATTGAATCTGTGACTAGTGTTGTGTTCCATGAAGATTGAAGAA TCACATGGTATGAGCTAGAGGGGAAATGTTGGTGTAGCCGAAAAGGAAGTGAAGTGATGCTATATAAATGGAGGTGGGTG GTGATTTGTGTGCAGTGATAATATGGATATCATTGCCTACAAATTTTAATGACAGTTTAAACCCTCATTTACCGATTTAT TTTGTGGCGATTTTAAAACTGCAACTGATGCATAAAAACAACCACAAAATGTGTTGGTGACAATCGAAATCGACACAAAA ATAGATGACAGGACAAGTGTTAGTGGCGGTTTAAACTGTCAAAAAAGTGTCCCAAGCACTGAGTCACTAAAAAATAAGGT GTTGTCGCTCGCCCAACTAAGGTCGCTCATCAGGTGAGGGCACTACATGCTGCACGAAGAAGTGGCTCGCCGAATAAGAA AGTCGCCAATGAGTGATCGCTCACTAAATAAAGATGAGGCTCGCATGATGAAGGGATCACCTCACTAGCTCGCCTAATCG CCTCCCTCCCAGAAATCTCTGACATGTTAGCTCAAGTTGGCAACACGCCAACACTACTCAACTTTGTAGTCTAGCATGGC CCTTGGAAGTTTGTGGCTAATATATCTATAAAGTTTTCCAGCTAAAATCCGGGTGGTGTCATGTTGTGTAATTTATCCAA AGATGTGATTTTTAACTCCACTTCAAATTCTACCTGCCTGGCCAATAAACCACATAATACAAATAATCTGTGGAAAT
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0237600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTTTTGAACTTGCAGTTTTCTCCGGGGACTTTCATCAAACACCTCACGTCCCGAAAATTCACAACACACTGTTTGCA CAAATCCTCCACACCCTCCCTCTCCCACTTCGGAACCCTAACCTCTCGCCAGAAAGACCAGATTCATCTCTACGTCGACG CTCTTCTTCAATGGAACAAGCGTATGAATCTGACAGCAGTTCGAGAAGTGAACCAAGTCATGGAAAGGCACGTGGAGGAT TCGCTTGCGATTTTACCTCCGTTGAGCGACTGTTACCGCGCGCACTGCGGTGGTTCTGGCGATAAGCTCAGCCTTGTTGA TGTCGGAACCGGCGCGGGCCTCCCCGGAGTAGTTTTGGCCATAGCTCGTCCAGAATGGGATGTGACGCTGCTCGAGTCTA TGAACAAGCGATGCGTCTTCTTGGAGCATGTTGTTAGTGTTGTAGGTTCCTCCAACATTCAAGTTGTAAGAGGAAGAGCT GAGAGTTTGGGGCAGAATCCTCGCTTCAGAGAGCAATTTGACGTAGCGGTAGCCAGGGCAGTTGCAGAGATGAGAATATT AGCTGAGTATTGTGTTCCATTTGTTCGAGTGGGTGGGTTGTTTGTTGCTGCCAAGGGTCATGATCCTGAGGATGAAGTTA AGAAAGCTGAAAGCGCCATCCAGAAGCTGGGTGCATCTCTATTGCAAGTACAATCAGTGGAATCGCAAAGCCCATATGGT CAGCGAACTGCTGTCATATGTCTAAAGGATCATCCCACACCGATGAAATATCCCCGTGATCCAGGTACACCAGCTAAAGA ACCGTTGTAA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0237600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVLNLQFSPGTFIKHLTSRKFTTHCLHKSSTPSLSHFGTLTSRQKDQIHLYVDALLQWNKRMNLTAVREVNQVMERHVED SLAILPPLSDCYRAHCGGSGDKLSLVDVGTGAGLPGVVLAIARPEWDVTLLESMNKRCVFLEHVVSVVGSSNIQVVRGRA ESLGQNPRFREQFDVAVARAVAEMRILAEYCVPFVRVGGLFVAAKGHDPEDEVKKAESAIQKLGASLLQVQSVESQSPYG QRTAVICLKDHPTPMKYPRDPGTPAKEPL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31760:SF1
16 269 254 1.4E-137 –
PANTHER
PTHR31760
16 269 254 1.4E-137
IPR003682
Gene3D
G3DSA:3.40.50.150
35 269 235 2.9E-86 –
Hamap
MF_00074
37 246 210 26.8
IPR003682
SUPERFAMILY
SSF53335
37 269 233 2.16E-37
IPR029063
Pfam
PF02527
45 235 191 2.8E-51
IPR003682
TIGRFAM
TIGR00138
50 243 194 1.4E-48
IPR003682
CDD
cd02440
105 183 79 0.00873339 –
MobiDBLite
mobidb-lite
250 269 20 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005737
Cellular component Cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
Subterm of
GO:0006364
Biological process RRNA processing Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
Subterm of
Part of
GO:0008649
Molecular function RRNA methyltransferase activity Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a nucleoside residue in an rRNA molecule.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0237600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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