Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0242200 |
| Transcript ID | LotjaGi4g1v0242200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ulp1 protease family, carboxy-terminal domain protein; TAIR: AT3G06910.1 UB-like protease 1A; Swiss-Prot: sp|A1ZAU8|PTRO_DROME Patronin; TrEMBL-Plants: tr|G7K006|G7K006_MEDTR Ulp1 protease family, carboxy-terminal domain protein; Found in the gene: LotjaGi4g1v0242200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:59030031..59034777) extracted from Lotus japonicus Gifu genome v1.2.
GAATATTATTTTCTTTAATAATTAAATATTCAATAATTTTGAAAAATAATTAAATGAAATTATTGGAACATTATTAAATA TTAATTTCTATTTAAATAATAAATTTTAAAATATTATTACCTAAAAATAATATGCTGTACTGTCGTTAGTCTTCTTCCTT CATGACCTCTTTCTCTTTCTCTCTCAGCTTCTTTTTGCTGACACGCATGTTGCTTGTTCAGCTAACATAGCACGTGAAGT GCAAAAGCTTACTCTCCTTCCTCTTTCTTTTGAACTTTGAACGACCACAGATGACAGACGTAGGTTTAAAGCCTACTCTG TCTCTGTACTCTGTTGCAGCTTTGGCAGCTTGCATAGTGTTGTCCAGTCGATTGAGTAATAATACACAGTAAATATATTA TCTAATATAATATACTTAGTTATATAGCCAAGGTAGGGATACATCCAAACCAGTTTCAAAAAATGCAAAGACAAAATAGG GTACGACCACCACCACTTGAGGCAACAATAGGTAGATATGTTGTTTTTGTTGGTAGAGAGTCTGAGATATACACAAATTG ACATGATTGCAACCGGCAGGTTTATGGATTCCCTGATTCATATTTTAAAAAATACCCCACTTGCGAGGAAGATGCTGGCG CGTGGATGCGTTTTTTGGCCGAGGGAGGTATGAGGAACTTTCCTCGTAGAGGAGCAAGGCCAATGGAACATGTTCACTGG GAGGGGGATTTACACTTTGCCCCCTCCCCTGCTGCATCTGGAGGCTTGGATGAGTCTTTGAGAGAGTCATCCTCTGAAAA TCAAGGGCTCGGGATTTCAAATGCTCGACCAAGAAATAACATGTGGGATTCCATGTGTTTTATTTTGTTTGGTATTTTCC TTGGCATGATGCTGACATCATATGTGATTTCTTAGTTTTGTTGTTTTGTAATTTGACATTAAATGTTTTTTTTAATTATG TATGTCTGTGTGTTGTGTTGTATCCAAGTGTTATTGTAATGTGTAATATATATTAATTTAAGTTGTTTATGTTTGGAATG CATGTCTGTTTTATTTAATTTAATGTTAAATTTAAATTAAATGATAATCTTGAATGATTCTGGATTGGATTGTGGGTCCT GAGTTCAGTTCATTGTTAGAAATGGAAGTGGTTTTGTGTTTCTGATCGTGGGGTCCCACGGTCTTACTTGGAAAATTCTA GTCCTTTTGTAACTATGTTTAAACTACCTAGTTGAAGTGAAAGTGACTGAGTAATGGGCTGATTGGTGACTACTTGTAAA CCCAACAAAGTGACAAAGTGTACTATATTACTATTAAATTGAATTGGGTTTCAACACCCACCCTATCACAATCACAATCC TCTGAAGTAAGATACTCTTACCCTTACCCTACTCTCCTCTTCCCTACTCTTACTCTTGAGTCTTGTTGAACCTGTTTGGA ATTTGGCTAACTCTAACTCTATTTTCGTGTAAGTCATGGGTGGATCTGAACCTGGAAAGTTTGTTGAGGATGAACCAAGC CTCAATACTCCATTGGATGGAGGGGAAGGAAGGTTAGTTGATTTATTCTTGTTGCCTTGTAACATCATTTTGATTTGAAC TATCTTCGTAACTTGAGTTTTTCTCTTTTTCTCTTCCATTATTTAACATCAGATCTTTAAAAAAGAATAACATTGTTTAA AAATTTGTTACATTTATTTATTTAGCATTATTTTTCTTGCCTTCAAGAACTAAGTTTGTAATATCAGTTTCAACATTATT TCTTGTCTTCAACAATTATGTAACATGAGTTTCAAAATATTCTTATTTATAATGAGATATTCCAGAAATCATCCAAGAAC TAAGTTTCTAACCTCTTCTCTTGTATTAAATCTTCAGCTTAGATATGATGACAGACATTGTACATGAGGAGGCTAGGGTG GTCGAGCATTTTGATCCAACAGCACTTTGCAGTGATGTTAAACAGATTAACATTGCTGTTATTAGTCTTGCTGGGTCGGT GAAAGCTGCGTTGCTGAAGTTCGAAAGTGTAGATGCTCGGCTAGAGGAATTTCAAACTATTCAGGCTGGGATGCAAGCTA ATATGGTGAGGGTAGACAAGTATTTGAGCATGGTTGAGAAACCAGTTGTAACAAAACCACATCCCAAAGGTGTTAGTCAG TCTAAAGGGTTTGCATCTTCTGCTGGTATGAAATTTAAAGCCACTACATTGGAGCCTAAAGGTGGTAGTCAATCAAAAGG GAAAAGTGCATCTGGTGCTGGTATTAGGTCTAAACGCATTTCAACTTCTGCTGGTAACAACAAAAGGATGAAGACAAGAG CTGCAACTGAGATCATGGAAAATGACATATTGAATGTTGATTTTGATGGAGCTGATTTGGAGATTGATGAAGGTGCATCT GCTGCTATCCAAACCCAAGAGAGTGATGTTGATGTTGTTGCTAGTGCTGAAAATCTGTGTACTCCAGAAACTCCAAAGAA CCCACCCTTTCTTACATCTTGGTTGCAAAAACGTTTTAGGAGTGCTACATCTATGGAGGTAATCTTCTTAGTAGTTGACA AGCTTTAAATTTTTATTTCTAAATGACATCCTAAGTGTTTGTGTTTGACCTTGAATCTGCAATGTTGTAGGGAGTTATTG GAGCCTTTGTGAGGAAAGATGTTGAAGAAACAAAGCAGAAGCTATTTCATTCCCCGTGTTCCGCCAAAAAGCCTCCAAGC AATTTTCTAACTACTCTCCCTGCCTCTAAAGTCATTAACCCGGTGACGCAAGCAAGACTATACATTCGGCCTTCACCTGC TCCCATTTTTCCCAAGGTAATTGTAACAATATAAAGTGCTGAAATAACAGTATTATTTGTAATTAACTGGTGTGAAATGT TAAATTGTTCTTTAATATTAATAATTAACTTATTATTTATGATGACAGAGTGCCAATTTAAAGTTTAACCTCCCTTCGGA GTTTGACTGAGGTCATTTTGAAGCTCAAGCTGCTGTGTACTTATTCCAAAAGGACCAAGACCCAAAGTAAGTTGATGTTT ATTATTTGTAATCTGTTACAATCCTGTTTACATACTTAATGTCTTGCGCTGCTGTGTAACAGGGAGGTTGTCCTAACAAT GGATTCTTATGAAGCAAGGAGAAAGGATTTTGATTGCTTGGTGCCTGGTCAACAAATTACAGATAAGGTGGTTTATTGTT TAGAATGTTCATGCTTGCATTTAAGCTGTTTGTGGCAGAAGACTGTTCTTATATTTGTCTTTTTGTTTGTTTGTATTTAT ATTTTCAATTTGATTGTTGTAAAGATAGCACGGGAACAGAGCTATCTTCTGAATGATACTATATGGTGCATTCCTCCATC TTTTGTGGTAAGTATTAATTCAATTTCATATCCTCTTTTTAAATTGTCTGAAAATATTGAATGGAGCATTTTTATTTAAG TTGTTGTTTTTTGTTTTTATTAGGATGATGTTTACAAGGGTCTTTCTATTGAAAAGCTTGTTAGGGCTTACTTCATCCCT TTCATGACTCCATGGAACACACTAAGCTTTGTAAGTATTGACATAGCTATTTGTACATGTATATTTGGAGGGGGGGTTGG GGGGCTGCAAAAAATTGGAGGGGGGGGGGGATGCAAACTCTTTGTGGTCACCATTTAACATATTTGAATCATGTGTAGAT TTATGTTCCTATGAAGAGTGAGTCTGGGCATTGGTATTTGATGGTCATTTCTATTGTGGATTATGCTTTCTATTACTTTG ATTCTCATCTCAATGTGGAGGATGTACCCATAAGATGTGCAAGCATGCGAACAATGGTAATTATTTGTCTCACTTCAAAA TATCTTACTTACATTATTTATTCACCTTCAAATTTAATGTTTCTCTGGTGGTGTTGGCAGTGTGATACACTTATGCAAAT GATGAGTACATCAGACCGATATGTTGAAATAGATTTCTTCCTAAAAATGTCAGAATTCCATTCATGGCAGCTGAAGGAAG CAAGGGGAATCCCCAACACAGGGAGCAGGTATGTGTATAATTCCTTAATGGATTATATAGAAATGCAGCAACTGTTTTGT ACTTTTGCCTAATTATTTCCTCCTGTTTTGACTGCAGTCATGATTCAGCGGTTTGGGTGCTGAATTGGCTTGAGATGGGA GCCGGGCTTAGCCCCAATTATAGTGGATATGTAAGTTTTCTCAACACATGTACATGTGGCTGTTTGTTTGTGTTATTTTT CCAATTAATAACATTTGTTTAGCCCCAATCATTGTCTGATGCTATCTGTTTCTATGACTAACATGATGTTGTTTATGTTG TAGCCGAATGATTGTGTTGTGCGTACGAAAACAACCACTAGTTTGTTGTATAACGACATGAGGAGAATGTTCGAAGAGAA GACTTGCTTGCTCTGGACCAGCCTTCATGTCGCTGATATAGATTGAGGAGAAAACCGTGAAGTTTTTTTGTTGTTTGCTG ATGTTCAGAGGGATGTGGCTATGGATGAGGCTAGTGCAAGTTGGAAAATATGTTTTTTTGTTGTTGATTTACATTTTTTT CCACCACTGATATGATATGATTTTGTTGCTGTGATTGATTGTAATGCCTCTTGTTTTGTTGGCTGCCTTGAACCTCTTGT AATTATGCCACATGGATGATTGGATGATTGGATTGTCAATGGAATTAGCTGGCAGAATTACTGCAACATTTAAGCTGGCA AATCCTGCATTATTGCAGAGCTGTAAT
CDS sequence (LotjaGi4g1v0242200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTCTTATGAAGCAAGGAGAAAGGATTTTGATTGCTTGGTGCCTGGTCAACAAATTACAGATAAGATAGCACGGGA ACAGAGCTATCTTCTGAATGATACTATATGGTGCATTCCTCCATCTTTTGTGGATGATGTTTACAAGGGTCTTTCTATTG AAAAGCTTGTTAGGGCTTACTTCATCCCTTTCATGACTCCATGGAACACACTAAGCTTTATTTATGTTCCTATGAAGAGT GAGTCTGGGCATTGGTATTTGATGGTCATTTCTATTGTGGATTATGCTTTCTATTACTTTGATTCTCATCTCAATGTGGA GGATGTACCCATAAGATGTGCAAGCATGCGAACAATGTGTGATACACTTATGCAAATGATGAGTACATCAGACCGATATG TTGAAATAGATTTCTTCCTAAAAATGTCAGAATTCCATTCATGGCAGCTGAAGGAAGCAAGGGGAATCCCCAACACAGGG AGCAGTCATGATTCAGCGGTTTGGGTGCTGAATTGGCTTGAGATGGGAGCCGGGCTTAGCCCCAATTATAGTGGATATCC GAATGATTGTGTTGTGCGTACGAAAACAACCACTAGTTTGTTGTATAACGACATGAGGAGAATGTTCGAAGAGAAGACTT GCTTGCTCTGGACCAGCCTTCATGTCGCTGATATAGATTGA
Protein sequence (LotjaGi4g1v0242200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSYEARRKDFDCLVPGQQITDKIAREQSYLLNDTIWCIPPSFVDDVYKGLSIEKLVRAYFIPFMTPWNTLSFIYVPMKS ESGHWYLMVISIVDYAFYYFDSHLNVEDVPIRCASMRTMCDTLMQMMSTSDRYVEIDFFLKMSEFHSWQLKEARGIPNTG SSHDSAVWVLNWLEMGAGLSPNYSGYPNDCVVRTKTTTSLLYNDMRRMFEEKTCLLWTSLHVADID
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 58 | 58 | - | – | |
| ProSiteProfiles | 1 | 176 | 176 | 8.869 | ||
| SUPERFAMILY | 2 | 177 | 176 | 7.26E-13 | ||
| Phobius | 59 | 78 | 20 | - | – | |
| Gene3D | 62 | 205 | 144 | 1.7E-6 | – | |
| Pfam | 72 | 176 | 105 | 2.6E-10 | ||
| Phobius | 79 | 83 | 5 | - | – | |
| Phobius | 84 | 100 | 17 | - | – | |
| Phobius | 101 | 226 | 126 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. | ||
| Molecular function | Cysteine-type peptidase activity | Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile. |
Expression pattern of LotjaGi4g1v0242200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…