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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0242400 |
| Transcript ID | LotjaGi4g1v0242400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MYB-like transcription factor family protein; TAIR: AT1G19000.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q2V9B0|MY1R1_SOLTU Transcription factor MYB1R1; TrEMBL-Plants: tr|A0A0S3R7S9|A0A0S3R7S9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0242400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:59070150..59072923) extracted from Lotus japonicus Gifu genome v1.2.
CCTCATCGCCGTCTTCGACCTATATTTAACACCACCCACTCTCCCCTCTCACTTTCTCTCTGTCACATTTTCCCTCAATT TCTCTCCCTCTCTCTCCGAGTCACTGACTCACCTCGTACGGACTCCGATTCCCCGATTCCGAGTTGAGTTCACCTCAAGC AACGCGCGATCCGATGATGAATCGTTCCTCCGCCGCCGATGACTCCGCCGTCTCCGGCGAGATCATGCTGTTCGGAGTCA GGGTCGTGGTTGATTCGATGAGGAAGAGTGTCAGTATGAACAATCTCTCACAGTACGAGCTTCCTCAAGACGCCAACAAT AACAACAACAGCAACAACAAAGACGTTATCGCCGCCGATTACGCCTCCGCCGACAACGCCGCTCCTCCCAGCTCCGGTAA GCAGCGCGACCGCGAGCGCAAGCGAGGTTTGATTAATAATCTCTTCGATTTTCACGCTTTTGTTTTCAATCTCAGTAGAT TCGTAATCGGTTGAAATGGAAATACGATTGTTGATTTTTGAATTGATTGGATGGATGTTGTTGTTCAGGGGTACCGTGGA CGGAGGAAGAGCACAAGCTGTTCTTGGTGGGATTGCAGAAAGTAGGGAAAGGTGATTGGAGGGGAATCTCAAGGAACTAC GTCAAAACGCGAACTCCAACGCAGGTTGCTAGTCATGCTCAGAAGTACTTTCTCCGGCGAAGTAACCTCAATCGCCGTCG CCGTAGATCCAGCCTCTTTGACATCACCACCGACACGGTAACTCCATCATCTCATCTTCCCTCTCTCTGGTTAATTTCAT TCCATTTTTTTCCCTTGTGTATCAATTAATTTATCAGCAATCTCTATATAGAAAAACTGAGAATGCTTTTTTGTGTGAAT TATTGTTCAATTAGTTTTATTCCTAATTAAACTGAGCATTATGGTTATGGTCTTTAAAAAATGACATTGGATTTTCTCTG GTTTTTCTTTGACTTCTAGGTTTTAATCAATAGTCAAGGTGAATACTAATACTTTAGTAATATTGGGGATTTGTAAGAAA GGAAAAAAGGAAAAAGAAACATCAAAATTGAAATGAAAACTTCTGATATTATGTGTATCTTGTTATGAAATAAATTCCCT TGGGTAGTTGAAGATTAGTCTGGCAGAACTAGAAAGGGGTGATTTAAGGTTATTGTTCCCCGCAATTTAAGGTGATTTAA GGTTATTGTTCCCTGCAATTTAAGGTGATTTAAGGTTTGCCAAGGGTTAAAAGTTATTGAAACCTGAATTGGAGAAACAA AATTTTATGATCTGATTTATTTATTTTTGTGTGTTTATCAGGTCTCTGCAATTCAAGTGGAGGAAGAACAGGTCCAGAAT CAAGATACCATGTTTCATTCACAGCCCATGTGCCCTGAAACTAGCAAAATCAGTGGATTTCCTATGATGCCGCCGGTATA TCAGTTCGGTGTTAATGAGAGTCCAATGGAAGAACTCTCTCTGGGACAAGGAAACATGAAACCCAATGTGCCAACCAATC TATTCCATCCAATTCCTGTTGCCCCAGATCATAAATCTCCCGCCATGTCTGATATCACATCCAGTTCGAGTTCCGCTGTT GAGCCGCCAACACTCTCCCTCGGGCTATCCTTCTCATCTGATCAGAGGCAGACATCATCAAGACATCCAGCTTTACATTC AATGCCGCGTTTCAACAACGGAGATAGCATCATAAGTGTTGCTTGATAAAGATGAAATCATGAAATGATCATGATCCATA TCTAGATCATCTTTGTTTCAAAGATTACTTATCTCTAATCTCATGTCACCGACCTTTTTTGGTGGGAGAAGAGGAAGAGC TTGAAGGAAAGGGCGATGGATTAGAGAAGGCAAGCTTAGGTGACTGTGTTTGATGATCCTTGTACAGACCGGGGACATGG TCCTGTCCTGTTTCTTCTTCTTGTTTGGTTATGTTAATGCTATCTATGACTTGAGATTCTTGTTTATTTGGACTTTTATG TTTGTAGTTGATGGATGTAACTGGAAATAACAAAGTACTTTCTGTTCATTGCTGATAACATTGGATGTGGACTACACAGA TGTGTGGTTTGAGACACTTTTGGTGGATAATATCAAGTTGGGTTTCAATTTAAAGGTTTGGCAGCTTGAGCCATTCTTGT TAGGTGTTGGAGGAGGGCACGTTTTTCATTTGTGATGAATGAATATGACATATCTACGCCTACCCACTAATGGACGGTTG CTGTAGTAGCATCATAGTTGTCTCTTGTTTATGAACCATGAAAATATCCGGTTTGTCCAAACACCAACTTTGTTTATGTC GTTCTTGAGTTGCTATCTTCTGGTGATTTGGTGGTAGTCCTATGCATTGATCACTGAGAACGATGTTTCTGGTCTAAGAA CCTTTGATCTATACACGTCTTTATTATAAAGGGACCACCCTGCATTAGTGATGCCAATTGCCATCAAGGAAAAAAAGAAC ATGCTAACTACCCAATTCCTCCTCCACAGAATAGAATTATAGGAATTGAAGTGGGGAGAGAATTATATGATAAATCATAT GATAAGAAATGAAAATATATATGAAAAAAACGCGTGGAAAGGAAGAAAAAAATGTATGTGAATTAATCAAAACTCTGGCC TCTGCCATCTACCGGTTCCACTTGGCATATTTTTCATTTCGTTCGAAATTTAAGGTTTCTATCCAAGTTTTTGAATCGAC TAATGCTATGTTTGACATGCCATTTCAGCTAGCTTATAACTTATTTGACTAGCT
CDS sequence (LotjaGi4g1v0242400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAATCGTTCCTCCGCCGCCGATGACTCCGCCGTCTCCGGCGAGATCATGCTGTTCGGAGTCAGGGTCGTGGTTGA TTCGATGAGGAAGAGTGTCAGTATGAACAATCTCTCACAGTACGAGCTTCCTCAAGACGCCAACAATAACAACAACAGCA ACAACAAAGACGTTATCGCCGCCGATTACGCCTCCGCCGACAACGCCGCTCCTCCCAGCTCCGGGGTACCGTGGACGGAG GAAGAGCACAAGCTGTTCTTGGTGGGATTGCAGAAAGTAGGGAAAGGTGATTGGAGGGGAATCTCAAGGAACTACGTCAA AACGCGAACTCCAACGCAGGTTGCTAGTCATGCTCAGAAGTACTTTCTCCGGCGAAGTAACCTCAATCGCCGTCGCCGTA GATCCAGCCTCTTTGACATCACCACCGACACGGTCTCTGCAATTCAAGTGGAGGAAGAACAGGTCCAGAATCAAGATACC ATGTTTCATTCACAGCCCATGTGCCCTGAAACTAGCAAAATCAGTGGATTTCCTATGATGCCGCCGGTATATCAGTTCGG TGTTAATGAGAGTCCAATGGAAGAACTCTCTCTGGGACAAGGAAACATGAAACCCAATGTGCCAACCAATCTATTCCATC CAATTCCTGTTGCCCCAGATCATAAATCTCCCGCCATGTCTGATATCACATCCAGTTCGAGTTCCGCTGTTGAGCCGCCA ACACTCTCCCTCGGGCTATCCTTCTCATCTGATCAGAGGCAGACATCATCAAGACATCCAGCTTTACATTCAATGCCGCG TTTCAACAACGGAGATAGCATCATAAGTGTTGCTTGA
Protein sequence (LotjaGi4g1v0242400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMNRSSAADDSAVSGEIMLFGVRVVVDSMRKSVSMNNLSQYELPQDANNNNNSNNKDVIAADYASADNAAPPSSGVPWTE EEHKLFLVGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDTVSAIQVEEEQVQNQDT MFHSQPMCPETSKISGFPMMPPVYQFGVNESPMEELSLGQGNMKPNVPTNLFHPIPVAPDHKSPAMSDITSSSSSAVEPP TLSLGLSFSSDQRQTSSRHPALHSMPRFNNGDSIISVA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 278 | 276 | 5.8E-129 | – | |
| PANTHER | 3 | 278 | 276 | 5.8E-129 | – | |
| ProSiteProfiles | 70 | 126 | 57 | 15.477 | ||
| SUPERFAMILY | 74 | 127 | 54 | 2.09E-16 | ||
| SMART | 74 | 124 | 51 | 8.8E-10 | ||
| TIGRFAM | 75 | 124 | 50 | 2.4E-16 | ||
| Gene3D | 76 | 128 | 53 | 1.3E-16 | – | |
| CDD | 77 | 122 | 46 | 4.96266E-10 | ||
| Pfam | 77 | 121 | 45 | 6.7E-12 | ||
| MobiDBLite | 218 | 278 | 61 | - | – | |
| MobiDBLite | 225 | 278 | 54 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi4g1v0242400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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