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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0246200 |
| Transcript ID | LotjaGi4g1v0246200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Homeobox protein, putative; TAIR: AT3G01470.1 homeobox 1; Swiss-Prot: sp|Q02283|HAT5_ARATH Homeobox-leucine zipper protein HAT5; TrEMBL-Plants: tr|I1JZS9|I1JZS9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0246200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:59788364..59792662) extracted from Lotus japonicus Gifu genome v1.2.
GTTCATTTATTGTACACAAAGAAATACTTGTGCAAAGTTACACAAACCTAAGTTGACCTGTTATATCAAGTTACAACAAG TTAAATCATTTTTTTTAAGAATAAATAAATTATTGTAAGAAAATCACATCTCCTTAATCTCTAATCTTTAATATTATCAC CTACCTACTTTAACAATAAAATTCAGAAAAGAAAATGTATTCAATTATTCATCATCAACCCTCTTTTTTTTTTTTATTTG AAATAGAAATTGATGATTAATAGGATGAGATTGAACGAACGGTACCAACAAGGAGGTGACTCAGAGCTTATTCAATTTCT ACTCCCAAGTCTAGAAAAAGAAACAGCATGACAATGAAACTCATCTCCAATGGAAATTTGGAATAGTTTAGCTTTTCCAT CCGTGAAACACATTAACACACATAGATGTAGGGAGTTTGCTGTTAGCGAGAGGCACAAAAAAATGGAGCAAGAAAACCTC TTAGAAGAGAATCGAACCAACAGTCCCTGAACCACCATGAGCCACCGCGCCGCTGAGGTCTATCATCTCCCCGTCGTTGC CAACAACAGCCCCACTATCCCCTCCATTTGCAGGTTCAATTTTTATTATCTCTTATTTCTGGATTTTGGGTCAAGTTCAT GGCTCCCAACCAAAATAGCAGCAGCGAAGGAAAGGGAAGGAGCTTCGATTCACCGTTGGAGCTGCGGTTGGGCTTGAGCA AGGAGGAACGACGGCGTGCCACGGGCTCGGGTTGGTGGTGGTGTGGTATGGGTTATTGGGGTTCCAATCTGGGTTTTCGT GCATAATGAAGATGAAGAGTGAAATGAATTTCTGGGGTTAAGATGAAGGAAGAAGATTAAGGATGGTGATGGCAGATTTA GACTTTTTCTTTAATTTTTTATTTTAACCCCATTTTAAATTAAAAAAGGGTGACCTGCTACTAAACTTGTGATAACAGGT CAATATAGGTTTGTGTAACTTTGCACAAACATTTCTTTGTGTACGGTAAATGAACCGAAGAAAGTGTTTTCAACATTTTT CTTTCATTGATACCTTACAACATTTGAAATCCCATTTGCATTTGTCATGGATGTACAGAACCCACTCGATCCTTTAATCT GTCCCCGCCCAAGTCCATCAAACCCGCATTCCAACAATTTCGAATTGAGTCTATGTACTATAAACATCCCTTACTTCTAG CTCTAAACATGTTTTTTTTTTGGAAACTATGTATGAAAGATTGCAATTTTCTAAATTAACATCACATGAAGACAATTTCA TATAATAGTAGCTACAAGCCTCCAACAATCTGATATGTATTTATGATGAAATATTATAGTACAAATGCATTTCATCATAT ATTTAAATGACATTGTGGCATGCAAATTTTAGTACAATTGATTTAGTAATTGTGTAATTTCTTTTATAATTTATTGATAG GATTAAAAATAAAGTGCTTACAAAATTAAAAAAACTTTATTAAATCTGCACCTCATCAAGTTACTTCGAACCTAAGGATC AATTCAAACTCAAAAATTGCTTCAATCAATATTCGAAATTGAATGAAAAATAAGTTGAACATGCGTAAGATGTCCTTGTC TAACAAACCCCCTTTGGACTAACCGAAACAAAAAAATGAAAGATATTATCTTCTTCCCGCCTTAGGAGTAGGAGTAGCAC AAAAAGAGGCATTAGCATTATACACCTAAAATTAAGGTCCAAAATGAGATTGTATACATTAAAAAATTTGAGGTAAATAA CTCATCATCCAATCACATTAGAGATAAGTGAGTTGAAAATAAATTAATAAATTCCAACCCACTTATCTCCAATATGATTG GATGATGGGTTATTTAACTCAAACTTTCTCATGAAACTTTTTTTTTTTTTTGATTATTCACGTGGTCTCATCTTCCCATT CATGTGTGCTTGTCAAAATTAATAAATATCATAAGGTTAGCAAGGAAAAACCAAGTAAACCATGAACATGACCTCAAATA GTGTGATTCACTCAAAGGGCATCATAGTAATAAGTAAACACTCTCTTCCCACCTAAAATGTCTTCCTATAAACCCAACTA GTCTCTCTTCTTCTCCAAACTCCACACACAAAACCGCCACCGCCTCTGTCTCCGCCTCCGCTCTGTGTCCGTTTCCGCCG TATCCACCTCTCCTTGATCCCCCATCGTCTCCCCCTTGTTCTGCTTATTCTGAGTGATGGGTATGCCCTGCCGCTGTTCC CACACCTCCCACATCACCGAGATCATCATCACCAGCTTCTTCCGCCACAAGTCTTAGATCTCCTTCCCCTTCTTCGTTCA ACAAAGCCTTCTCCGATGGCACGCTAAGCGCTTCCTTGGATTAAGCTTCTTTTTCTTTCTGATTTTATGGCGGGAGGGAG GGTCTTTAGCGGCGGTTCTGCTGCTCCTGCAAATGTTTCCGATACCAGTCTTTTGCTTCAGAATCAACCTCCTGATTCTT CTCTCTTCCTCTCTACCTCTGCTTCTTTTCTCGGTGAGTAATCGATTAACCTTCTCTGTATTCATGGTGGTTCAGTTTTA CTGATGAACTGTTTGTTGTTATGTCCAGGTTCAAGATCCATGGTGAGCTTCGCAGATAATAAATTAGGGCAAACGCGGTC GTTCTTCTCCGCGTTTGACCTCGATGAGAACGGCGATGAGGTCATGGACGAGTACTTTCACCAATCGGAGAAGAAGCGCC GTCTCTCTGTTGACCAAGTTCAGTTTCTGGAGAAGAGCTTCGAGGTGGATAACAAGCTCGAACCTGACAGGAAAACCAAG ATTGCCAAGGACCTTGGTTTGCAGCCACGCCAAGTCGCAATCTGGTTCCAGAACCGCCGTGCACGGTGGAAGACGAAACA GCTTGAGAAGGATTATGATTCTCTGCATAGTAGCTTTGAGAGTCTCAAATCCAACTATGATAATCTTCTCAAGGAGAAAG ACATGTTAAAAGCTGAGGTATATATATATTTGATCAACCTGCTTCTAAGGTGTTTGATGAAATGCCCAGAAAGTTTTGGC TTCTAAGTAAATTGTGATATTAAGCATACACTTAACTATTTTCAATTTCACCTTACATGTGTTTGTGAACTTTCAATTTT CAGGTGGCAAGTCTCACTGAGAAGGTGCTTGCAAGAGAGAATTTGAAACAAGTTGAAAGTGAAACAAAGGGATTGGTTGA ACCACCCCAAAGGCCTTTACTTGATTCAGTTTCAGAGGGTGAAGAATCTAAAGTCTCTGTTGGGGCTTGTAAACATGAGG ATATCAGTTCAGCCAGGAGTGAGAGTTTGGATTCTGATAGCCCACGTTACAGGGATGGATATGGAGTTAACTCAGCAGTG CTAGAGACATGTGATTCTTCTTATGTGGTTGAACCTGATCAATCGGATATGTCACAGGATGAGGAAGACAACCTGACCAA GACCCTGTTGCCTCCATACATGTTTTCCAAACTTGGAGATATGGATTACTCCGACCCGCCTGAAAGTTCATGTAATTTCG GATTTCCGGAGGAAGATCATGCCCTTTGGTCATGGTCTTACTGAAGAATATGTATCTCTGCTTTTATGTTCATGTTTAGT GTTTGCCCCTTTTGTTAAGATTTCAAATATGAGAGAGGCTGAGTGCTTCATAACAAATAAATCAGAACAATGACACCTTT GTAGAAATGGTGGTGTTTTGCTACATTGTAATTAATGGAACTTTTTATTCAGATGTTAAAAATGTCTTATAGCTGCTTGA AAATGTTGCTCTGGATGTAATTTCACAGGGAAATTGAAATAGAGGATGAACCAAGTTACTTTTTTATTGGTTCACTTTGT CTTGTTATCTTGGGTTCTGAACTTCTGGATCCCTGTTGTTTTGATTCATAAGCTACCATGCATTTTTTTGTTTTGATAAG CAATAAGCTACAATGCATGACCAAGTTGACTTGCTCATTGGTTGTTTCACTTTGCTAGAAGAGACTTGATGAAACCATTC AAGCTTTGTGAACACTTCCAATATAAAAAATTGACCAAACATGGCCCTCCAATGGATGAGAATCACGGAATCTCTTCTTC ATGTGCTCATTCCTGAAAATTTAACATAGAATTTTATTTTAGTACACTTCTTAATTAAAGCCAAGGGGATCTGTTTTATT TTAAGTTCTTCTCAATAATGCAAAAAAAGAAAAGAAGAGAAGACAACACTATGATGAGAAATTTAAAGGTTTGTGGCGAA TTTTGTACTTACTATAGGAGGAATTTATTAACAATCCATGACATTTCAGCTGTAAATTT
CDS sequence (LotjaGi4g1v0246200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGGAGGGAGGGTCTTTAGCGGCGGTTCTGCTGCTCCTGCAAATGTTTCCGATACCAGTCTTTTGCTTCAGAATCA ACCTCCTGATTCTTCTCTCTTCCTCTCTACCTCTGCTTCTTTTCTCGGTTCAAGATCCATGGTGAGCTTCGCAGATAATA AATTAGGGCAAACGCGGTCGTTCTTCTCCGCGTTTGACCTCGATGAGAACGGCGATGAGGTCATGGACGAGTACTTTCAC CAATCGGAGAAGAAGCGCCGTCTCTCTGTTGACCAAGTTCAGTTTCTGGAGAAGAGCTTCGAGGTGGATAACAAGCTCGA ACCTGACAGGAAAACCAAGATTGCCAAGGACCTTGGTTTGCAGCCACGCCAAGTCGCAATCTGGTTCCAGAACCGCCGTG CACGGTGGAAGACGAAACAGCTTGAGAAGGATTATGATTCTCTGCATAGTAGCTTTGAGAGTCTCAAATCCAACTATGAT AATCTTCTCAAGGAGAAAGACATGTTAAAAGCTGAGGTGGCAAGTCTCACTGAGAAGGTGCTTGCAAGAGAGAATTTGAA ACAAGTTGAAAGTGAAACAAAGGGATTGGTTGAACCACCCCAAAGGCCTTTACTTGATTCAGTTTCAGAGGGTGAAGAAT CTAAAGTCTCTGTTGGGGCTTGTAAACATGAGGATATCAGTTCAGCCAGGAGTGAGAGTTTGGATTCTGATAGCCCACGT TACAGGGATGGATATGGAGTTAACTCAGCAGTGCTAGAGACATGTGATTCTTCTTATGTGGTTGAACCTGATCAATCGGA TATGTCACAGGATGAGGAAGACAACCTGACCAAGACCCTGTTGCCTCCATACATGTTTTCCAAACTTGGAGATATGGATT ACTCCGACCCGCCTGAAAGTTCATGTAATTTCGGATTTCCGGAGGAAGATCATGCCCTTTGGTCATGGTCTTACTGA
Protein sequence (LotjaGi4g1v0246200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGGRVFSGGSAAPANVSDTSLLLQNQPPDSSLFLSTSASFLGSRSMVSFADNKLGQTRSFFSAFDLDENGDEVMDEYFH QSEKKRRLSVDQVQFLEKSFEVDNKLEPDRKTKIAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDSLHSSFESLKSNYD NLLKEKDMLKAEVASLTEKVLARENLKQVESETKGLVEPPQRPLLDSVSEGEESKVSVGACKHEDISSARSESLDSDSPR YRDGYGVNSAVLETCDSSYVVEPDQSDMSQDEEDNLTKTLLPPYMFSKLGDMDYSDPPESSCNFGFPEEDHALWSWSY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 18 | 317 | 300 | 9.8E-91 | – | |
| PANTHER | 18 | 317 | 300 | 9.8E-91 | – | |
| SUPERFAMILY | 69 | 141 | 73 | 6.42E-19 | ||
| ProSiteProfiles | 79 | 139 | 61 | 17.119 | ||
| SMART | 82 | 143 | 62 | 1.5E-19 | ||
| CDD | 84 | 140 | 57 | 2.01558E-18 | ||
| Pfam | 84 | 137 | 54 | 1.8E-16 | ||
| Gene3D | 87 | 137 | 51 | 9.8E-18 | – | |
| PRINTS | 110 | 119 | 10 | 3.0E-5 | ||
| ProSitePatterns | 114 | 137 | 24 | - | ||
| PRINTS | 119 | 135 | 17 | 3.0E-5 | ||
| Pfam | 139 | 180 | 42 | 6.9E-16 | ||
| Coils | 152 | 179 | 28 | - | – | |
| MobiDBLite | 190 | 222 | 33 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi4g1v0246200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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