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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0246800 |
| Transcript ID | LotjaGi4g1v0246800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heat shock family protein; TAIR: AT2G27140.1 HSP20-like chaperones superfamily protein; Swiss-Prot: sp|D9UBX6|RTM2B_ARATH Inactive protein RESTRICTED TEV MOVEMENT 2; TrEMBL-Plants: tr|I1JZS1|I1JZS1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0246800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:59818171..59820300) extracted from Lotus japonicus Gifu genome v1.2.
ATATTAGTGTCACGTTTCTTACCAAAGCTTGAGGTTTATTTTAATTGCTAGTTCACCCATCAATGGCTAATGCAAGAGGT GCTACTCCAAGGGTTGGAGTAACAACAAGGGCACGGGCACGGGCACAAACTCCAGTTGTTGAAGAGATTGTACCTAATTC TGGATGGACAGAGGACTCTGCAGGGCATTATCTTCTAGTTGATCTTCCCGGTATTGAATTAAACACCTAATTTACTTTTG AAGAGAAGAATGAGTGAATGTTTAGAAATTCTTGTATAATTGATTGATTTTGATGTCATAATCAATTGTGGAGATAAACT CATCCGAGTAGCTTCTTAGTTTTATAATTGATTTGAGGAAAAAGAGAAAGTAATCCAAACATGATATTAGAACATGCATA ATAATTGAGACTTGAGAGCAAACCTCATAGAGATCAATGGTTTTTGTCCTCTTCTTTTCCTTGGAGAACCACCTCAAAAT TTGTATGTACGCCATTTATTTACCCAACACTTGTTTAGAGTGTGTTTGGATAAATAACTTAATTAAGTGCTAATGAGTAA TGACAATAAATACTCATCACATGCAAACTAATTTGAGTAGCTTATGAAATTAAGTTTAAAAAAGCTTATAGTTAGGTCAA AAAGTTATTTTCACAAGCTTACCTTGAATCTTGCATAAGTTATACTTTAAGATACATTCAAATAACATCTTCCAAACACA AGTTTAACTAACTTTTAATCATATCTTGCTTCTTTAGAATTCAGGAAGGAGGAGGTGAAGCTTCAGGTTGATAGCTATGG CCGTATCGTTGTAAAGGGAGAAAGGCAAGCAAATGAGCAGAAACGTGTTCATTTTCAGCTGGTTTTTCCAGTGCCGGTGG ATTCCGATACGGATAAGCTAGCCGGACATTTTGATGGTGGAATCCTTTATGTGACTGTCCCCAAGCGAGTAGCAGAAGAG AAGAACCAAGAAAGTGAAGCTGAGAAAGCTGGGAATGGTGATGTAGCTGAAGCTGAAAGAGCACAAGAACATGATAGCCA TGAACCTGTTGTTGATCATGAGAGGAGGGATCCTATGCCACAACATGAAAACCATACTGAGCAGGAGGAAGAAAGAAGAA GAAATGAAAATCCGCAGATCCAAGAACTTTCTGAACAAGTCATAAGGAAGTGGAATCAAGAATCCATGCTCAGAAGTGCA AGGGTGGTTCTGATAAAAAACAAAGGAATTGTTATAACGGCTGTCATAGCCTTTTCCTTGGGTCTGTTCATATCTCGTAA ATTTGATTTCTCAGCAGAACCCTAAATCAAGTCCTTTGACCTGCATCCATTAATGTATATCCCTCAATTCAGGTCACTTT CCTTTTATATGTTTGTATAGAATAAAGCATCATGCAGATATTCAAACATTAATAATAATATATCTGCTTCATCTTCTTCT TTTCCAGTTAGTCTTTATATCTGCATTTGTAATTTGATTTAACTTAGCATGTCTAATTGAGTTAGTTGTGTGTGTTCCCC TTAATATATCCCATCTTCATTATAATTGGCCATAAAAGACTCAAAATCTTGCCTCATAATCATACAGAGTTATGGATCTA ACTAGAAATCAACATTTATACAAAATTGCTTTAATTTTCTTTGTCAAAATCACATATATTTTTACCATGAGTTTATAGCA ATCTGATCAAAGCCAAGTACTCATTAATTCAGTTCTAGTCTAAAGAAAGTATTTTAAACCAAATCCAAACCTCCTCATCT CTGCATCCTTGACTCCCAACAAAGTAAGGAACCAAAAGAAAGAGGTTATGAATTTTGATGCATATTACATACAGGCACAG CAGGTGCATCTGATCAATGAAGATTAAACAATACACAATCACTATAAGGCTTATCTTCCAAAAACAAACCTTTGTTCCAA CTTCCTTCTTTCTCAAGTGCCTGATTCTTTAGCTTCTATCCAATAACTTATGTTAGCTTCTATGCTCTAGTGAAACCTCA GAAAACAAAACTATAAACCAGATGACATCACATCTTCTTTATCAAAACAAAGCTCCTTTGCATATGATTCTTTAAAGTTT AAACTACAGGATTCTTCACTGACTACATCCAGTACCTGATCCCAATTAAG
CDS sequence (LotjaGi4g1v0246800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTAATGCAAGAGGTGCTACTCCAAGGGTTGGAGTAACAACAAGGGCACGGGCACGGGCACAAACTCCAGTTGTTGA AGAGATTGTACCTAATTCTGGATGGACAGAGGACTCTGCAGGGCATTATCTTCTAGTTGATCTTCCCGAATTCAGGAAGG AGGAGGTGAAGCTTCAGGTTGATAGCTATGGCCGTATCGTTGTAAAGGGAGAAAGGCAAGCAAATGAGCAGAAACGTGTT CATTTTCAGCTGGTTTTTCCAGTGCCGGTGGATTCCGATACGGATAAGCTAGCCGGACATTTTGATGGTGGAATCCTTTA TGTGACTGTCCCCAAGCGAGTAGCAGAAGAGAAGAACCAAGAAAGTGAAGCTGAGAAAGCTGGGAATGGTGATGTAGCTG AAGCTGAAAGAGCACAAGAACATGATAGCCATGAACCTGTTGTTGATCATGAGAGGAGGGATCCTATGCCACAACATGAA AACCATACTGAGCAGGAGGAAGAAAGAAGAAGAAATGAAAATCCGCAGATCCAAGAACTTTCTGAACAAGTCATAAGGAA GTGGAATCAAGAATCCATGCTCAGAAGTGCAAGGGTGGTTCTGATAAAAAACAAAGGAATTGTTATAACGGCTGTCATAG CCTTTTCCTTGGGTCTGTTCATATCTCGTAAATTTGATTTCTCAGCAGAACCCTAA
Protein sequence (LotjaGi4g1v0246800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MANARGATPRVGVTTRARARAQTPVVEEIVPNSGWTEDSAGHYLLVDLPEFRKEEVKLQVDSYGRIVVKGERQANEQKRV HFQLVFPVPVDSDTDKLAGHFDGGILYVTVPKRVAEEKNQESEAEKAGNGDVAEAERAQEHDSHEPVVDHERRDPMPQHE NHTEQEEERRRNENPQIQELSEQVIRKWNQESMLRSARVVLIKNKGIVITAVIAFSLGLFISRKFDFSAEP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 201 | 201 | - | – | |
| Gene3D | 10 | 122 | 113 | 1.9E-15 | ||
| PANTHER | 15 | 223 | 209 | 4.1E-68 | – | |
| PANTHER | 15 | 223 | 209 | 4.1E-68 | – | |
| ProSiteProfiles | 24 | 127 | 104 | 18.217 | ||
| SUPERFAMILY | 27 | 117 | 91 | 6.98E-15 | ||
| CDD | 35 | 112 | 78 | 1.78218E-13 | – | |
| Pfam | 36 | 121 | 86 | 6.5E-11 | ||
| MobiDBLite | 117 | 178 | 62 | - | – | |
| MobiDBLite | 117 | 176 | 60 | - | – | |
| TMHMM | 199 | 221 | 23 | - | – | |
| Phobius | 202 | 221 | 20 | - | – | |
| Phobius | 222 | 231 | 10 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0246800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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