Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0248300 |
| Transcript ID | LotjaGi4g1v0248300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb factor; TAIR: AT3G47600.1 myb domain protein 94; Swiss-Prot: sp|P81392|MYB06_ANTMA Myb-related protein 306; TrEMBL-Plants: tr|I3RSY3|I3RSY3_LOTJA R2R3MYB transcription factor; Found in the gene: LotjaGi4g1v0248300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:60107237..60109240) extracted from Lotus japonicus Gifu genome v1.2.
ATATATACTCGCATCAAGCCAATTCCTGTAGCGCTACAACGCCATCATCAACCCTTATATCAGATCAAGCAAGGTTTGGA TCTGAGAGCAAAACTCTTAGAACTAAGAGAAGAAGAAAGATAAAAGATAGGCAAATATAGCTAGCTAGAGTTCATTTTCT CTTGACATAAACATGGGCAGACCACCTTGCTGTGACAAAATTGGCATTAAGAAAGGACCTTGGACCCCAGAGGAGGACAT CATCTTGGTCTCTTACATTCAAGAACACGGACCAGGGAACTGGAGATCAGTTCCTACCAATACCGGTATACAACTACACT TAACTATTTCCTCTTAATTTAATCACTTTTTCCATTTTTCTGATTGATTAGTATAGTCTTTTCATTAATTTTGTGTGTTC TTTTTTCTTTTCTAGGTTTGATGAGATGCAGTAAAAGCTGTAGACTTAGATGGACTAACTATCTTCGTCCCGGTATCAAA CGAGGTAACTTCACGGATCAAGAGGAGAAGATGATCATCCACCTCCAAGCCCTTTTGGGAAACAGGTACTAATTACTCAC ATGTTTGCTCTAATTTGCTATTTTCAATATAACAGTACTAGATCTTGAAGAAGTAGTTAAAGAAAAGAAAGTTAGGTCAC AAAACACACATACACAAAACACACACATATTTTACCTAATACTAACATTTTCAGATCCAAACAATATATGGTACTCATGA AATAAAAGGAAGTAAGTATATTGGATCTAGTTGTTTGGTTTGGAAATACTTGCTGAAATTAATGATGAAGTTGTTGCTAA ATACACAAAATGATATTGTAAGGAGCAGATGTGGTCTTGGCATGATCCACTAAGATTCAACTATTGTCGTTTCGATTCGT AAAAAAAATAAAAAATTAACAAGGTTTCTGTATGTATGAACATGCAGATGGGCTGCTATAGCTTCATACCTTCCTCAGAG GACAGACAATGACATAAAGAATTTCTGGAACACCCATTTGAAGAAGAAGCTAAACAAAGACCAAAGTGGGAGTGAAGAGG GTCATGACCATGAAGGACATTCTCCTTCCTCTTCTTCTTCCCAACAGATAAAGGGTCAGTGGGAGAGAAGGCTCCAAACA GATATCCACATGGCCAAACAAGCCTTATCTGATGCTTTGTCCCTTAATAATGTTTCACCTGAAACCAAGCCCTCACCTTC TCATGCATCCACCACATACGCATCAAGCTATGAAAACATTGCTCGATTGATGGAAAACTGGGTGAAAACAACTCCAAGTT CAGTTGAGACAAACTCCTCATCAGGTTATTCAATCAGCAACGTGGTCACCACTGGATCTAGTTCTAGTGAAGGAGGGCAA TCCACCACGACGTGCGCGCAAGATCATGCTTTTGATTACTTGTTGACCTTCAAATTATGTGATGGCGGATCTCGATCTAG GTCAGTTGAAGAGAACAACAAGAAGGAGGGTATCTTCCAAGATCTGAAGACAGGTTTCGAGACACAAGTCCCTCTCACGC TGCTGGAGAAGTGGCTCTGTGATGAAGGAGCTGCTCAATGCCATGAAGATCTCATAAACATGTCACTGGAAGAAAGTTCC ACAGGTTTGTTTTAGCGTGTGTTTGAATTCAGAGTCGGAATCACCTTCAATGCTAAAGCTATGTAATATTAGTATTTAGT ATGTTTAGATCTACTTCTCTTTCATCACAATCAATTCTGAAGCTTACAAGCTACTCAAAGTTTCTTTCATTAATCGATCT CAGCTTCAGGATCAATTGTAGAAGAGATTCTAAGCATGCACTGTAACTTTTCTTTTTAAAGTGATTCCAGTAGGTTGTAA TGTGCATCCAAACAGCGGAAATTAAGGCCTTTTAGAAATATGGACGAGCTCTTGCAAATGTAACTTAATTAGCTTAATTA GAATTGTACATTACAAGTACGTCTTTATCCTTAATTATGTTATGTACCAATGTTTAAGAGTTCAATGTACGTGTTGTTTC GCCA
CDS sequence (LotjaGi4g1v0248300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCAGACCACCTTGCTGTGACAAAATTGGCATTAAGAAAGGACCTTGGACCCCAGAGGAGGACATCATCTTGGTCTC TTACATTCAAGAACACGGACCAGGGAACTGGAGATCAGTTCCTACCAATACCGGTTTGATGAGATGCAGTAAAAGCTGTA GACTTAGATGGACTAACTATCTTCGTCCCGGTATCAAACGAGGTAACTTCACGGATCAAGAGGAGAAGATGATCATCCAC CTCCAAGCCCTTTTGGGAAACAGATGGGCTGCTATAGCTTCATACCTTCCTCAGAGGACAGACAATGACATAAAGAATTT CTGGAACACCCATTTGAAGAAGAAGCTAAACAAAGACCAAAGTGGGAGTGAAGAGGGTCATGACCATGAAGGACATTCTC CTTCCTCTTCTTCTTCCCAACAGATAAAGGGTCAGTGGGAGAGAAGGCTCCAAACAGATATCCACATGGCCAAACAAGCC TTATCTGATGCTTTGTCCCTTAATAATGTTTCACCTGAAACCAAGCCCTCACCTTCTCATGCATCCACCACATACGCATC AAGCTATGAAAACATTGCTCGATTGATGGAAAACTGGGTGAAAACAACTCCAAGTTCAGTTGAGACAAACTCCTCATCAG GTTATTCAATCAGCAACGTGGTCACCACTGGATCTAGTTCTAGTGAAGGAGGGCAATCCACCACGACGTGCGCGCAAGAT CATGCTTTTGATTACTTGTTGACCTTCAAATTATGTGATGGCGGATCTCGATCTAGGTCAGTTGAAGAGAACAACAAGAA GGAGGGTATCTTCCAAGATCTGAAGACAGGTTTCGAGACACAAGTCCCTCTCACGCTGCTGGAGAAGTGGCTCTGTGATG AAGGAGCTGCTCAATGCCATGAAGATCTCATAAACATGTCACTGGAAGAAAGTTCCACAGGTTTGTTTTAG
Protein sequence (LotjaGi4g1v0248300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLMRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIH LQALLGNRWAAIASYLPQRTDNDIKNFWNTHLKKKLNKDQSGSEEGHDHEGHSPSSSSSQQIKGQWERRLQTDIHMAKQA LSDALSLNNVSPETKPSPSHASTTYASSYENIARLMENWVKTTPSSVETNSSSGYSISNVVTTGSSSSEGGQSTTTCAQD HAFDYLLTFKLCDGGSRSRSVEENNKKEGIFQDLKTGFETQVPLTLLEKWLCDEGAAQCHEDLINMSLEESSTGLF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 280 | 278 | 1.2E-119 | – | |
| PANTHER | 3 | 280 | 278 | 1.2E-119 | ||
| ProSiteProfiles | 9 | 65 | 57 | 25.334 | ||
| SUPERFAMILY | 11 | 108 | 98 | 4.49E-30 | ||
| Gene3D | 12 | 67 | 56 | 3.3E-19 | – | |
| SMART | 13 | 63 | 51 | 2.1E-13 | ||
| Pfam | 14 | 61 | 48 | 8.9E-15 | ||
| CDD | 16 | 61 | 46 | 2.73875E-11 | ||
| SMART | 66 | 114 | 49 | 3.8E-15 | ||
| ProSiteProfiles | 66 | 116 | 51 | 19.544 | ||
| Pfam | 67 | 112 | 46 | 9.3E-14 | ||
| Gene3D | 68 | 140 | 73 | 9.9E-20 | – | |
| CDD | 69 | 112 | 44 | 1.22252E-10 | ||
| MobiDBLite | 116 | 132 | 17 | - | – | |
| MobiDBLite | 116 | 146 | 31 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi4g1v0248300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…