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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0249600 |
| Transcript ID | LotjaGi4g1v0249600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT3G47530.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9SN85|PP267_ARATH Pentatricopeptide repeat-containing protein At3g47530; TrEMBL-Plants: tr|I1JZP1|I1JZP1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0249600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:60269265..60271088) extracted from Lotus japonicus Gifu genome v1.2.
CACCCAGTGGAACCTGCAATCAACTTAGCGCCTATTCCACACCACAAACGAAACCAACCAACACCCATCTCGTCTTTCCC TCCATCTCACAAAGAACAGGTGATTTCTACCATAAAATCTGTTTCCCAGAAACCCCATTTGCTTCAAATCCATGCTCACA TTGTTTGCACAACCCTCGTTCATGACCCTGCAGTTTCTCTTCACTTCTTGTCCCGGGTAGCTCTCTCTGGCCCTTTGCAA GACCCCATCTATTCCCGCCGATTCTTCGAGCAAATCAACCGACCCATTGTCTCCCATTTCAACACCATGATCAGAGCTTA TTCCATGAGTGATTCACCTCAAAAGGGTCTCTATTTGTATCGGGATATGAGAAGAAGAGGCATTGCTGCCAACCCTTTAT CGTCTTCCTTTGCTGTGAAGTCATGTATCAGGTTTCTGGATATTGTTGGTGGTGTCCAGGTTCATTGCAATGTCTTCAAA GATGGGCACCAATCAGATTCCCTTTTGCTCACTGCTGTCATGGACTTGTATTCACAGTGCCGGAAAGGTGATGATGCTTG TAAGGTGTTTGATGAGATGCCTCAGAGGGATACTGTTGCTTGGAATGTGATGATCTCTTGCTGTGTTCGGAATAATCGGA CTCGTGATGCTTTGAGCTTGTTTGATGTTATGCAGAGTACGAGTAATAAATGTGAGCCTGATGATGTTACTTGTTTGCTG CTTCTTCAGGCTTGTGCTCAATTGAATAGCTTGGAATTTGGTGAACGAATTCACAATTATATTATGGAACGTGGTTATGG AGGTGCTATCAATTTGTCGAATTCACTCATAGCTATGTATTCACGGTGTGGTTGTTTGGATAAGGCGTATGAGGTGTTTA TGGGAACGCCCAACAAAAGTGTGGTTTCTTGGAGTGCAATGATATCTGGTTTAGCAGTGAATGGATATGGGAAAGAAGCC ATTGAAGCGTTTGAAGAGATGCAGAGAATTGGAATTCGGCCTGATGATCAGACATTCACGGGTGTCCTTTCTGCTTGCAG TCATTCTGGATTGGTCGATGAGGGGATGTCATTTTTCGACAGAATGATCGGAGAGTTTGGGATAACTCCAAACATTCATC ATTATGGGTGCATGGTTGATCTCTTAGGCCGTGCTGGCTTACTTGACAAGGCCTATGAGGTAATTACAACAATGGCGGTA AAGCCAGATCCCACAATATGGAGGACATTGCTCGGGGCTTGCAGAATTCATGGTCATGTTACACTTGGTGAACGAGTAAT TGAACGTCTGATTGAATTGAAAGCTCAAGAAGCCGGGGACTATGTTTTGCTCCTAAATATTTATTCTTCTGCTGGACACT GGGAAAAGGTAGCAGAAGTAAGAACATTAATGAAAGAAAAAGCAATCCAAACCACACCTGGTTGTTGCACAATTGAATTG AAGGGAGTTGTCCATGAGTTTGTTGTGGATGATGTTTCACACAAGAGAAAAGGTGAGATTTACGAGACACTGGATGATAT TAATAAGCAGCTAAAGATTGCTGGTTATGTCGTTGAACTTTCATCTGAGTTACATAAGGTGGATGACAAAGAAAAGGGGT ATGTGCTCTCTTATCACAGTGAAAAACTGGCTATTGCTTTTGGGGTTCTTGCTACTCCACCCGGCACGACACTTAGAGTG GCTACTAATGTCCGAGTATGTGTTGATTGCCACAATTTTCTGAAACTTTTTTCTGGGGTTTACAACCGTGATGTAATTCT TAGGGACCATAAACGGTTTCACCACTTCCGCGGAGGGCAATGCTCCTGTAGCGACTACTGGTAG
CDS sequence (LotjaGi4g1v0249600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCAGAGCTTATTCCATGAGTGATTCACCTCAAAAGGGTCTCTATTTGTATCGGGATATGAGAAGAAGAGGCATTGC TGCCAACCCTTTATCGTCTTCCTTTGCTGTGAAGTCATGTATCAGGTTTCTGGATATTGTTGGTGGTGTCCAGGTTCATT GCAATGTCTTCAAAGATGGGCACCAATCAGATTCCCTTTTGCTCACTGCTGTCATGGACTTGTATTCACAGTGCCGGAAA GGTGATGATGCTTGTAAGGTGTTTGATGAGATGCCTCAGAGGGATACTGTTGCTTGGAATGTGATGATCTCTTGCTGTGT TCGGAATAATCGGACTCGTGATGCTTTGAGCTTGTTTGATGTTATGCAGAGTACGAGTAATAAATGTGAGCCTGATGATG TTACTTGTTTGCTGCTTCTTCAGGCTTGTGCTCAATTGAATAGCTTGGAATTTGGTGAACGAATTCACAATTATATTATG GAACGTGGTTATGGAGGTGCTATCAATTTGTCGAATTCACTCATAGCTATGTATTCACGGTGTGGTTGTTTGGATAAGGC GTATGAGGTGTTTATGGGAACGCCCAACAAAAGTGTGGTTTCTTGGAGTGCAATGATATCTGGTTTAGCAGTGAATGGAT ATGGGAAAGAAGCCATTGAAGCGTTTGAAGAGATGCAGAGAATTGGAATTCGGCCTGATGATCAGACATTCACGGGTGTC CTTTCTGCTTGCAGTCATTCTGGATTGGTCGATGAGGGGATGTCATTTTTCGACAGAATGATCGGAGAGTTTGGGATAAC TCCAAACATTCATCATTATGGGTGCATGGTTGATCTCTTAGGCCGTGCTGGCTTACTTGACAAGGCCTATGAGGTAATTA CAACAATGGCGGTAAAGCCAGATCCCACAATATGGAGGACATTGCTCGGGGCTTGCAGAATTCATGGTCATGTTACACTT GGTGAACGAGTAATTGAACGTCTGATTGAATTGAAAGCTCAAGAAGCCGGGGACTATGTTTTGCTCCTAAATATTTATTC TTCTGCTGGACACTGGGAAAAGGTAGCAGAAGTAAGAACATTAATGAAAGAAAAAGCAATCCAAACCACACCTGGTTGTT GCACAATTGAATTGAAGGGAGTTGTCCATGAGTTTGTTGTGGATGATGTTTCACACAAGAGAAAAGGTGAGATTTACGAG ACACTGGATGATATTAATAAGCAGCTAAAGATTGCTGGTTATGTCGTTGAACTTTCATCTGAGTTACATAAGGTGGATGA CAAAGAAAAGGGGTATGTGCTCTCTTATCACAGTGAAAAACTGGCTATTGCTTTTGGGGTTCTTGCTACTCCACCCGGCA CGACACTTAGAGTGGCTACTAATGTCCGAGTATGTGTTGATTGCCACAATTTTCTGAAACTTTTTTCTGGGGTTTACAAC CGTGATGTAATTCTTAGGGACCATAAACGGTTTCACCACTTCCGCGGAGGGCAATGCTCCTGTAGCGACTACTGGTAG
Protein sequence (LotjaGi4g1v0249600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIRAYSMSDSPQKGLYLYRDMRRRGIAANPLSSSFAVKSCIRFLDIVGGVQVHCNVFKDGHQSDSLLLTAVMDLYSQCRK GDDACKVFDEMPQRDTVAWNVMISCCVRNNRTRDALSLFDVMQSTSNKCEPDDVTCLLLLQACAQLNSLEFGERIHNYIM ERGYGGAINLSNSLIAMYSRCGCLDKAYEVFMGTPNKSVVSWSAMISGLAVNGYGKEAIEAFEEMQRIGIRPDDQTFTGV LSACSHSGLVDEGMSFFDRMIGEFGITPNIHHYGCMVDLLGRAGLLDKAYEVITTMAVKPDPTIWRTLLGACRIHGHVTL GERVIERLIELKAQEAGDYVLLLNIYSSAGHWEKVAEVRTLMKEKAIQTTPGCCTIELKGVVHEFVVDDVSHKRKGEIYE TLDDINKQLKIAGYVVELSSELHKVDDKEKGYVLSYHSEKLAIAFGVLATPPGTTLRVATNVRVCVDCHNFLKLFSGVYN RDVILRDHKRFHHFRGGQCSCSDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 155 | 155 | 2.1E-86 | – | |
| Pfam | 1 | 26 | 26 | 0.038 | ||
| TIGRFAM | 1 | 29 | 29 | 3.7E-4 | ||
| Gene3D | 1 | 168 | 168 | 4.0E-29 | ||
| ProSiteProfiles | 1 | 28 | 28 | 8.046 | ||
| ProSiteProfiles | 64 | 94 | 31 | 8.122 | ||
| Pfam | 69 | 94 | 26 | 0.0028 | ||
| TIGRFAM | 69 | 95 | 27 | 0.0027 | ||
| ProSiteProfiles | 95 | 129 | 35 | 10.238 | ||
| Pfam | 95 | 144 | 50 | 4.6E-11 | ||
| TIGRFAM | 97 | 132 | 36 | 1.3E-7 | ||
| ProSiteProfiles | 132 | 166 | 35 | 6.939 | ||
| PANTHER | 150 | 363 | 214 | 2.1E-86 | – | |
| ProSiteProfiles | 167 | 197 | 31 | 6.106 | ||
| Pfam | 172 | 191 | 20 | 0.011 | ||
| Pfam | 197 | 245 | 49 | 7.1E-12 | ||
| ProSiteProfiles | 198 | 232 | 35 | 11.783 | ||
| TIGRFAM | 200 | 233 | 34 | 6.8E-6 | ||
| ProSiteProfiles | 233 | 268 | 36 | 9.295 | ||
| TIGRFAM | 236 | 269 | 34 | 4.9E-5 | ||
| Gene3D | 249 | 434 | 186 | 1.5E-19 | ||
| ProSiteProfiles | 269 | 299 | 31 | 7.487 | ||
| Pfam | 272 | 296 | 25 | 0.13 | ||
| ProSiteProfiles | 301 | 331 | 31 | 6.095 | ||
| ProSiteProfiles | 335 | 369 | 35 | 7.191 | ||
| Pfam | 339 | 365 | 27 | 1.1 | ||
| Pfam | 371 | 495 | 125 | 2.2E-34 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi4g1v0249600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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