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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0250600 |
| Transcript ID | LotjaGi4g1v0250600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT1G74410.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q8LBA0|NIPL2_ARATH NEP1-interacting protein-like 2; TrEMBL-Plants: tr|A0A0B2SUU1|A0A0B2SUU1_GLYSO NEP1-interacting protein-like 2; Found in the gene: LotjaGi4g1v0250600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:60406082..60413193) extracted from Lotus japonicus Gifu genome v1.2.
TTAGCAAATGCTTTTGTCTATAAAAAAGTTGGAGAATTTTGCATATGTTGAATGAATTACTAGCCACTAGCTACTCTTTA AGTGTTGCTTGCTCAAGGATTTGAGGTTTGCTTTTATTGGTCTCATGTAACTCGTGATGTCTTGTGTTTTTTCAATTGCA GCTGGGGCTCTCACAGGAGCTCTAGCAGGCGCTTTAGCAGCTAAGGCTACCAAGAGTGGTTTTTTCCGGGGAGTTTCGTT GGGTGCCATTGCTGGGGCTATACTCTCGGTGGAGGTGTTGGAAGCTTCCCGGGCCTACTGGTGTATGGAGCAAACTGGTT CACGGGGTGCATCATCTATGGTTGGTGATCATTTTGCTCTTTATTTTCAATTATTTCTTTATGTTTGGAGTCATATTTGT AACTTGCAAAGTTATGAGGAACAACATGGTTACAGAATTACATTTTGGTTTGAAATGGCTCTATATAGGAGATATTTATG CCTGGTACTAGTTTGTGCTTGCCTGTTCATTAAGAAGCACCTTAAGAGTGTGATTACTGAGTGGCAATCTTAATTCGTAG TTTTAAACCAATTTCTATCATTTAAGTCCAGGCAGATTTCATAGAAGAACTTGTTCGTGGAAGGCTTGTAGAGGAATCAC TTACACCTGCTATTTTAACTGCTTACAACTTGCAAGTATTATTTCTATCTCTCTCTCCCCCCACATTTTCCTTTTAAAAG CAAAAGCTTTTTATGTATGTTGATGCATATAATAGTCTAGTTACAGCGGTGTAACCTCTGTGTTAGTAATATTGAGCTGT TGAGTGTGACCAATTTGAGATGGGCAACTCAGTGTATATAACTGGTTATTGTTGTAAATAAGGAATTAATATAAGAATTA TTATTAGAAGATTATATTCAGTATTAGGAGATTTATTCTCTTATTAGGAGATTGTGTACATAATTAGTTATTTCCTTATT TAGGATTAGTCTTCTTCTATATAATGTAATTACCCTTTGTATTCTGATTAAGAAGTAATAATACAATTTCTCCTACTTTC AAGTTGGTATCAGAGCTCCCGATCTTGGGAGTTCTGCTTCTGCGAAAAAAACCCTAGCCGTCTTATTACGACCCTTTTAT CTGGTAACGTTTCCTGTTTTGCCACTGTTGGCTTATACCGTTTGGAGGCCTGTGCTCTTCATCACCGGCCTGCCATCCTC TGTTCGTTACTCCGATTGCACAGAGAGGGTTCCCCGTGCCTTTTGGTCTTGTTCTGAGGGTCGTTTCCTCACTTTGTTGG TGTTTTTTCTTGAGAAGCCTTTGGTTCTTCCATTCAAGGAGAGTGCAATCTTCTCTGTTTCTGTTATTTTTCCTCTTGTT TCCCTTCTACAGTAACATCTCTCAGTATGTCTGGAGACGAGATTCCCATACCTAAGGAGAAACTCACTTCTGGAGTGAAA GTCTCTCTTCCACCTTTGACCCACAAAGATCTTCCGGTATTACAAGGTTCCTTTCGCTTGGATGGGCGCAACTACCTCCA ATGGTCTGAGCTCATCCGTCACACTCTCATAAGTCGTAAGAAAATCAGTTATATTGAAGAAAAAGCCCCTGCTGAAACTG ATCCACAATATGACACATGGCGTGAAGAGAATTCTCTTATTATGACCTGGTTTTGGTACTCCATGATTCCGGAAATTAGC CGGAATTATATGTTTTTCCCTACTGCTAAGGAGATTTGGAATAATCTGGCACAGGCATATTCTAAGAAACAAGATCTCTC AGCTTGTTATGAATTGGAAAATAAAGTTTTCAATTCTAAGCAAGGAACTCTCTCCGTGACAGATTACTATGAGACCTTGA ATGGTCTATGGATTGAATTAGATCAGTATCAAAATCTGAAGATGAAGTGTGATGCTGACTCCACAACATTGAATAAATTT ATTGAAAAAGCGCGAATCTTTAAGTTTCTCTCTGGGCTTAACTCTGAATTTGATCCGATTCGGGTCCAAGTTTTGGGTAA AGAGCAACTCCCTTCTCTCTCAGAGGTGTTCTTTATAGTTCGTGGTGAAGAAACTAGGAGGACAGTGATGGTGGAAGACA AATCAGTTGATGGTTCAGCCTTAGCCTCTGGAAAGGGTCCCATAAAAGGATCCACCTCTTCCGGACACCCTAACCGTGAT GATCGCCCCAACCGTGATGATCGCTTCAACCGTGATGATCTCTTCAACCGTGATGATCGTTGCACTTACTGTAAGAGGTC TGGTCACACCAAAGAGTACTGTTTCAAACTTTATGGAAGGGAAAACGTCCTTAGACGTATGAGGGGGTCCAAAGGTGCTC CGCAGAGGCGCGCAAATCACACAACTTCTGACATGGAAAATGATGGTGAAGTCCCACCTGTACCACCAGCAGAAGATGTC CCTAGCCTTAGCAAAGCAGAATTGGAGCGTCTGAGAGCTTTTATGGACTCATTGAGTAAGCCCTCTGGTTCTTGTTCTCT CACAATGACTGGTAAGAGTTCTACCTTCTTATCTCTTAATGCTTTGAGTACTGAAAATGACTGGATTATTGACTCTGGTG CTACAGATCATATGACACCTCACCCCTCACATTTATCTTCTTATTCCACTTACCCTGAAAAACACTATATCACTGTTGCT AATGGATCCCAAAACCAGATTACGGGATGTGGTAATATTCACCTTAGTCCATCTCTTCCCTTAAAGCATGTGCTTCATGT CCCAAAGCTTTCTAACAATCTTTTGTCCATCCATAAACTCACTCGAGACTTGAACTGTGCTGTAACCTTTTTCCACTCAC ATGGTGTTTTTCAGGATCTTGCCACGGGACAGATAATTGGGATTGCTAAGGAACAGGACGGGTTATACTGTCTGCGGCAC GAGGAAAGCAAGTGTCATCAGACGAGTTCAGAGTCCTGGAATACTTCTCAAATATGGTTGCGGCACAAGCGTCTTGGGCA TCCTCCTTTTAGTATTCTTAGGACCATGTTTCCCCATTTATTTTCAAAAGTGTCAGTCGAATCTTTTCATTGTGATGTTT GTCAGTTTTCTAAGCATCATCGTTCAACTTTTCTTCCTAGTAATAATAAATGTGCTCAACCTTTTGATCTTGTTCACTCT GATGTGTGGGGACCTTCGTCCATTTCTAATGTTTTTGGTGCAAAATGGTTTGTTACTTTTATTGATGATTGTACTCGGAT TACATGGGTTTTTCTTATGAAAGATAAGTCTGAGGTGTTTCAATTATTTGTTAACTTTTTCCACATGATTAGAACACAGT TTGGGAAACCTATTAAGAGGTTAAGGTCAGACAATGGGAAAGAGTATGTTAACAAGAATTTTTCTGAATTTCTTACAAAA AATGGTGTGGTTCATGAGTTGACTTGTGTTGACACCCCACAACAAAATGGGGTTGCTGAAAGGAAAAATCGTCATCTTCT TGAAATCACTCGAGCTTTACTCTTTCAAATGAATGTTCCTAAGTTTTATTGGGGGGAAGCTTTCTTGACTGCTGCTTATT TAATTAATAGGTTACCTTCTAGGGTTTTATCTAGTGTTAGTCCTGTGCAGGTTATGACTAGCTTCTTTCCGTCTGTGCCC ATTAAGTCAGGTCTTCAAAGTCGTGTATTTGGTTGTTCCGCCTTTGTCCATGTTCACGGTCATCATCGGGGTAAGTTAGA TCCTCGGGCTATTAAGTGCATCTTTATAGGATATGCCTCAGATAAAAAGGGCTACAAGTGTTATCATCCTCCTAGTCGTC GTGTCTATATATCCATGGATGTTACTTTTCAAGAATCAGAGTCTTTTTATCCCAATCCTCAGCTTCAGGGGGGGAATACT CAGGAAGTTGAGTCTCCAGAATTGTCTGTTATTCCTCTTTTACAGGATCCCTTGATGCCTTCCTCTATTCCTATCACTGA GGACAGTGATGATGATGACAATGGTCCTGAACTAGTACCAAATCAGAATGATGACAATGGTCCTGAACTAGTACCAGATG AGAATGATGACAATGGTTCTGAAGTAGTACCAGATCAGAATAATGTTGACAGGTTCAGGATAAAGTACCAGCGGAAAGTA AAACCCGTCCTGATCCAACAACAAGTCCAATCGTCTGATCCTGAGGTAAGTGTTGCGAACCCTGAGCCTAGTAATTCCTA TGAGCATAACCTTGATGACTTACCTATTGCCTTACGAAAAGGAAAACGTTCATGTGCCAAGTACCCTATATCCCAGTTTG TGTCTACTCAAAATCTTTCTGTGCAGCATCAGAGTTTTATTTCAGCTATTGACTCTATTAGAGTCCCTACATCAGTACAA GAAGCATTAAAAGATAAGAACTGGATTCAAGCCATGAATGAAGAGATGCATGCACTGGACAAAAATGGAACTTGGGAGAT TGTTGAGAAGCCAAATGACAAGAGGACAGTAGGTTGCAGGTGGATTTATACCGTGAACTACCGATCTGATGGCACACTTG ACAGGTATAAGGCGAGGCTAGTTGCAAAGGGATACACCCAGACCTATGGAATTGATTATGAAGAGACATTTGCTTCGGTA GCAAAAATGAACACTGTAAGGATCATTCTTTCCTTAGCAGCTCATTTTGATTGGGAGTTGCAACAGTTTGATGTTAAAAA TGCTTTCTTGCATGGAGATTTGGAGGAAGAGGTGTATATGGAGATTCCACCGGGGTATGACCCTACTTCAGGAAGAAATA AGGTGTGCAAACTGAAGAAGGCCCTATATGGGCTCAAACAGTCACCCCGAGCTTGGTTTGGGAGATTCACTAATGCTATG GTGTCTCTGGGTTATAAACAAAGCCAAGGTGATCATACCCTCTTTATCAAACATACTCAAAATGGTAAACTCACTCTTCT GTTAGTCTATGTAGACGATATGATCATTGCAGGTAATGATGAACTTGAGAAGCAGAATCTGAGGAAACAGTTGGCAGCCC AATTTGAAATGAAGGATCTTGGAAAACTGAAATATTTCCTAGGTATGGAGGTGGCATACTCGAAGCAAGGGATTTTCATA TCTCAAAGAAAGTATGTCCTTGATCTTCTCAAAGAGACTGGTAAATTGGGTTGTAAGCCCATTGGAGTGCCTATAGAGCA AAACCACAAGATTGGAAGTAGTGAGGAGGACCTTAGGGTTGATAAGGCTCAATATCAGAGACTTGTGGGGAAGCTCATTT ATCTATCTCACACTAGGCCTGACATAGCTTATCCTGTTAGTGTTGTCAGTCAATTCATGCATGACCCACAGGAGAGACAC TTACAGGCTGTGGATAGAATCTTGCAGTATCTGAAGGCAAGTCCAGGGAGAGGTCTGCTGTTCAAGAAGAGTGAGCAGTT GTCTATGGAGGTTTATACTGATGCAGATTATGCAGGGTCAATTGTTGACAGGAGATCCACTACAGGATATTGTATGTTCT TGGGTGGAAATTTAGTTACATGGAGGAGCAAGAAGCAGAATGTAGTTGCTAGATCAAGCGCAGAGGCAGAGTTTAGAGCC ATGGCTCAAGGAGTTTGTGAACTGTTGTGGATGAAGATCATACTGGATGATTTGAAAATAAAGTATGAAGCTCCCATGAG ACTCTTCTGTGATAATAAATCTGCCATTAGTATTGCTCATAATCCAGTCCAACACGACAGAACAAAGCACATAGAGATAG ACCGGCACTTCATCAAAGAGAAATTGGATAGTGGTCTAATATCTACACAGTATGTCCCCTCAGGACTTCAGTTGGCTGAT GTGCTCACCAAAGGACTTCCCTTGGAGCGGTTTCGAGAGCTTACTTGCAAGCTGGGAATGATAGATATTCATTCACCAGC TTGAGGGGGGTGTTGTAAATAAGGAATTAATATAAGAATTATTATTAGAAGATTATATTCAGTATTAGGAGATTTATTCT CTTATTAGGAGATTGTGTACATAATTAGTTATTTCCTTATTTAGGATTAGTCTTCTTCTATATAATGTAATTACCCTTTG TATTCTGATTAAGAAGTAATAATACAATTTCTCCTACTTTCAAGTCCATCTGTGCTAATAAGACCTGTGAATAATGCCCC ATTTGTTTCATATAAATTTCCTTTCCATTATGAAAGCCTCCAAAATGCCAACATTCTATCTCTCCTCCTGTTCGCTAGTT TTCTGAGCATCTTAACTATTTTGTATCTGAAATCAGCCTCTTTTTCAAGCAATTCACCTGAAAAGGGTATTTCTAGGTTT TTTCACAGAAATGTGGTAATATAATACCAATGACACTAATGCTACACATGCTCAGGATGATCTTTATTCTTTTCATGTAT TTTGACAATATATTTTGATGTGCACTCACTACTAATTGCTTTTGTATGTCAATGATTGGATGTGCCTCTTTTTGGTCTTC TTTGTATTTCTCTCCTGACTATTCTGTTTCACTCTTGTTGATTTTTATAACCCCAAATGTAAACGATTTCGAATTTTATT TTAAAAAGCCATGGTTTGTAAGATTTGCTTACATGTAACTAAAATGAACTTTTGTAAATCTTTACTATGGTGATTGTTCT GGACTTCTGTGTCTGAAGGTAGATGTTTTAGTTTGAGCAGGTCGGGGTTGCAAACACAGGCTATGATGATATTCATGATG TTCATAACTTAGTAGCATCCAGAGGACTGTCAGGGGACTCATTGAAGAAACTGCCGCACCATATGATTTTGAAGGACATG AAGGCAGAGAATTCTTACTGTACAATATGTTTGCAGGTGATTATTCTTTGAGAATTTGAAAATTCCTAATTTTTTCTTTT TAACGGCTTCGTGGATTAACGGAGAAGGACATTTATTCATGTGTAGGTTCTGCAAGTACTAACATCAAACTGTTACATGT TACTTCCCATAGTTTTTCATTACCTCCCCATTTGAATTTTTGAAGATACTGTTAATGAAACGTTTGTAACATCAACAAGT GCAATTTGCAGGATATTGAAGTAGGCGAAATTGCAAGAAGCCTACCTGACTGTCACCATACATTTCACTTGATATGCGTT GACAAGTGGCTTGTCAAGAATGATTCATGTCCTGTCTGCAGACAGAATGTGTAGTTTGTTCATTTTGGGTGG
CDS sequence (LotjaGi4g1v0250600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGCAAACTGGTTCACGGGGTGCATCATCTATGGCAGATTTCATAGAAGAACTTGTTCGTGGAAGGCTTGTAGAGGA ATCACTTACACCTGCTATTTTAACTGCTTACAACTTGCAAGTCGGGGTTGCAAACACAGGCTATGATGATATTCATGATG TTCATAACTTAGTAGCATCCAGAGGACTGTCAGGGGACTCATTGAAGAAACTGCCGCACCATATGATTTTGAAGGACATG AAGGCAGAGAATTCTTACTGTACAATATGTTTGCAGGATATTGAAGTAGGCGAAATTGCAAGAAGCCTACCTGACTGTCA CCATACATTTCACTTGATATGCGTTGACAAGTGGCTTGTCAAGAATGATTCATGTCCTGTCTGCAGACAGAATGTGTAG
Protein sequence (LotjaGi4g1v0250600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEQTGSRGASSMADFIEELVRGRLVEESLTPAILTAYNLQVGVANTGYDDIHDVHNLVASRGLSGDSLKKLPHHMILKDM KAENSYCTICLQDIEVGEIARSLPDCHHTFHLICVDKWLVKNDSCPVCRQNV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 131 | 131 | 5.0E-56 | – | |
| PANTHER | 1 | 131 | 131 | 5.0E-56 | – | |
| Gene3D | 49 | 132 | 84 | 1.2E-19 | ||
| SUPERFAMILY | 68 | 132 | 65 | 1.74E-20 | – | |
| Pfam | 86 | 129 | 44 | 2.0E-12 | ||
| SMART | 87 | 128 | 42 | 1.1E-6 | ||
| ProSiteProfiles | 87 | 129 | 43 | 12.238 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0250600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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