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LotjaGi4g1v0252100.5

Overview

Field Value
Gene ID LotjaGi4g1v0252100
Transcript ID LotjaGi4g1v0252100.5
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description Eukaryotic translation initiation factor 5A; TAIR: AT1G13950.1 eukaryotic elongation factor 5A-1; Swiss-Prot: sp|Q9AXJ4|IF5A_MANES Eukaryotic translation initiation factor 5A; TrEMBL-Plants: tr|I3SPM6|I3SPM6_LOTJA Eukaryotic translation initiation factor 5A; Found in the gene: LotjaGi4g1v0252100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:60580657..60581244) extracted from Lotus japonicus Gifu genome v1.2.

ATGTCTGACGAGGAGCACCATTTCGAGTCCAAGGCCGACGCCGGAGCCTCCAAAACCTACCCTCAACAAGCCGGTACCAT CCGCAAAAACGGCTACATCAACATCAAGAACCGCCCCTGCAAGGTTTAGATCTCGCGTCTTGATTCTTATTATCATTTTT CATTTTCCCCTAATTTCAGGTTTTGATTTGTTCCACTTTTGGTTGATTGAACTGCAGGTTGTTGAAGTTTCCACTTCCAA GACTGGGAAGCACGGTCATGCTAAGTGCCACTTTGTTGGAATTGATATCTTCACTGGCAAGAAGCTTGAGGATATTGTTC CTTCTTCTCATAATTGTGATGTATGCTGCTGCATACCCATTAATCTTATTATGATTTAATTTATTATTTTTTGCGAAAAT TGTTATTAAGATTTTTTTTTTGCGTGGTTAGGTTCCTCATGTGACTCGTACTGATTACCAGCTCATTGATATTTCTGAGG ATGGATTTGTGAGTTTAACTTAACACCTTCCTTTAATTCATTCCATGTTGTTGTTGGTGTTGATTTTTCTTCTGTATTTT TAATTTGTATAAATGCTATTAGGACTAA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0252100.5) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCTGACGAGGAGCACCATTTCGAGTCCAAGGCCGACGCCGGAGCCTCCAAAACCTACCCTCAACAAGCCGGTACCAT CCGCAAAAACGGCTACATCAACATCAAGAACCGCCCCTGCAAGGTTGTTGAAGTTTCCACTTCCAAGACTGGGAAGCACG GTCATGCTAAGTGCCACTTTGTTGGAATTGATATCTTCACTGGCAAGAAGCTTGAGGATATTGTTCCTTCTTCTCATAAT TGTGATGTTCCTCATGTGACTCGTACTGATTACCAGCTCATTGATATTTCTGAGGATGGATTTGACTAA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0252100.5) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSDEEHHFESKADAGASKTYPQQAGTIRKNGYINIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTGKKLEDIVPSSHN CDVPHVTRTDYQLIDISEDGFD
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11673:SF32
1 101 101 9.2E-81 –
MobiDBLite
mobidb-lite
1 27 27 - –
PANTHER
PTHR11673
1 101 101 9.2E-81
IPR001884
Gene3D
G3DSA:2.30.30.30
1 85 85 1.3E-46
IPR014722
SUPERFAMILY
SSF50104
15 93 79 1.91E-27
IPR008991
TIGRFAM
TIGR00037
17 99 83 1.0E-31
IPR001884
Pfam
PF08207
24 72 49 3.3E-4
IPR013185
ProSitePatterns
PS00302
50 57 8 -
IPR019769

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0003746
Molecular function Translation elongation factor activity Functions in chain elongation during polypeptide synthesis at the ribosome.
Subterm of
GO:0043022
Molecular function Ribosome binding Interacting selectively and non-covalently with any part of a ribosome.
Subterm of
GO:0045901
Biological process Positive regulation of translational elongation Any process that activates or increases the frequency, rate or extent of translational elongation.
Subterm of
Positively regulates
GO:0045905
Biological process Positive regulation of translational termination Any process that activates or increases the frequency, rate or extent of translational termination.
Subterm of
Positively regulates

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0252100.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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