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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0254100 |
| Transcript ID | LotjaGi4g1v0254100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane adipocyte-associated 1; TAIR: AT3G05010.1 Protein of unknown function, transmembrane-40; Swiss-Prot: sp|Q5ZII3|TPRA1_CHICK Transmembrane protein adipocyte-associated 1 homolog; TrEMBL-Plants: tr|I3T2L6|I3T2L6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0254100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:60830240..60836193) extracted from Lotus japonicus Gifu genome v1.2.
CAACTATTATTAAATGGAAAGTTTGTGTTTCCTCCCTAATCCTAATTAGTGTTGCTGACAGAAGCTTTGGTCGTTCCATG ATCTACCATTCAACCCAACCAATTCCACGATCTAGTTGAACACAACTCCACTCCACTTTCTCAACAACCAAACAAACAAT GTTTTCTTGTGAATCAATCACACTCTGTGAATCAGGGACGTAACAACAACGAAACTAAACCATGTCAAGGAGCGTGGAAG AGGAGATCAAGATCAACAGCGATGTGGTTGATCTGAACTGCAACGGATACGACACCTTCCTTGTCGTTTCGTCGGTTCTG TTCATCGTGTATCTGGTGGTGCGCGCCAAGAAGAACTTCAGGAGGCTCTTTCATGGTGGCTCATACATTTTGATTTCCTA TTATGCCCTCCTCTGGCTTGTTACCCTTTTGAACCTCGCTTGGTCTTTTCTTCAGGTACATACATGCCCATCAATCATAT CTTCCCTTTCTTTGCGAAATTTCGGAACTTGTTGTGATTCTCTTGAAATTTCAGTGGTTTTGGTGCAGAATTTGCATCTG GGTCTTTCCCGATTTCTTTGCATTTTTTTGTCACAGTTTTTTATGATTGGCTGTATGTTTTTTACATTGTCAAGTAGGGT GAGTGTTGCAAGGAATGAAGTGTGAGTGTGAGAGTATTGTTCCTACAAGGAATTGTTAATTAGGTAGTAATGTACTTGGT AAGGTAAATCAATATTTGGACTAGTTCATTTTGGTTGAAGAGAGTGCTAAAAGATATCTAGATGACATGCAGAAAGAGTT AAATATTTTTTTGAAGTTTCAAATGTATACAATGCAGCAATGCTTTACAATGCACAGGAAATAATGATAGAGGGGTTAGG GTCTGATTTCACCTTATTTTCCCTTAATGCATTTATTGAACCCAAACCAAGTTCTTAGTCAGAAATCAACTCAGTTAGAT AATTAAGTTCATTTCCTTGGTACCGCAATCCTTTATTCCTGACCTTAGTTGACTAATTCCTTAGATTGGCTTATTTGGCA ATAATCAATCGAAGCAAGGGAATTTACGCAAGATCACATTTATTTACACCGACGTCTTTTCATAGATCATCAACTTATGT GGTGATTACTTCAAGACCTCCCGTACACTAATTTTTCGATTGGATATATGGACATATCATTATCTTGTGGTGGACCAAGG CATGTAAAGCGTTACGAACAGAAGGAATCACTTGATCAAGGACAAAGAGCTTGACTAAAAGCATCGAATCTGAGGTGCAA TTGAGTTTAAATTTGGATCCATCCTTCCCTAGCCTAAAGAATATGTTTTCACATGATAATAGAAGCAAAAGAGCAAAGAG ACGGAGAAAACTCTTCTAGATCCATAGAGTAGAAGCTAGATCGGAGCTTCCACATTCAAGGCTTGTATTCCTTTGAAAAG CAGTTTCAAAGACGCATGCTTCATGATCCCTCTCTCTGCCAAAAGATTTCTCTAACTTTTATAATTTTTATACTGTTAAA AATAATTTTCAGCACTGACCATGGAGTGCTAGATTCTTGGTGTTGGGCCCCATCAAGGCTGATAAGCTTTCTTACCTCTT CCCATTGGCCTGAGCACTGTAGGTCCAGAGCTTAGTGTTGGCTATGCAGCGCTTCATCTGGTGCTCTTTTTGTGAAAGAA AGCATGAATTCAAGAGCTATACAATGATTACATTGCTTGATAATTCTTGACACAATAACATGTCGTAGCTTGGCCCTTTT TCAACGAATTAAACCATATTGCTCAAGAATCCCTATGTAAAATCAGAGATTATCTTTAACCTTTCAACTTCGGCTTCTTT TTTGCTTAAACAGACATGGCAGTGTTCTCCCGGAAAGCAGGTTGCATGGAATCTCCTGTCATTGTTTACGACATCTGGTA TGCTATGTCTAGAGATAAGCTTGATGGCTTTCTTACTAAAGGATAACTACATGAATGCCATGGAAGCTCTAGCACACACT TTCATTGTATCAGGAATTATTGTCTTTGTGGATATCCTTCTTAAGGTGAGACTGGTTTACATTCATTTAAGTTATATACA TGCATGTGTATGCATATTTACTTGTTTTATAAAATATAAGTGAATTTTTATGCCCCTGTTTGGTGTCTAAATTTATTTAG TCTTTCTCGGTTTCATATAATTTTCCTCTGTCCAGGCATTTAATTTTCTCCGCACCAGTTACCTGTTTTCAAAACCATAG TCTTAAGCTTCATCTAGTTGCAATATATCTGCTTAGAAAACCATAGACCTTTGTATTAGCAATATGCAAAGAAGAAAAGT AGTCAGTTGGCTAATGAATCGTCATTGGTTTATATCAGCAACGCTGATCAGTAGTTTGATTGCAACCTGATTTGAAGCAG CATCATAGAGTTCCATGAAAACAATTCTTTAGAACGCTTTACAGCTTCTATGATACTAGAGAAAATGTGTTTGACTTGAC AAGCGAACTTGTTTTGGTAGTGATTCTATGGTAATGGTAACTGTCCATAAGTTCATGTTAGAGTCCTCTGTGAATGTCCA TGGTCAAGTTTTCAAAAGGCCATAATGAATAATTGCAACCTCATTTTTGCAATCTTTATGAGTTTTTTGGTTTTTGCTAT ATGATTTTTGAACTCAACTCTATCATTCAGTAAAAAAATCACTGTCAGTTTTCAATGAATACTAGGACCTAGATGTATCT TACCTGGTCTGACAGATATAGCGTATGTTTTGTGATGAAATACTGGTGTGTAGTATGTTTTAAGATTGTAATACATTACT GGGTTTTAATCACATGCTTTATCAAATTTAATCTTTTATTGAGTTGGAACAGGTTTCCAGATTACTACAAAGAATTGGCT TCAGTTACATCTTATGATTGGGGGGGGGGGGAGACGGGTATCTCATGAATGTTAAGAATATGAAAAATGTTTTAGCTCAA GAAACGGCTGTGCATCTGAAAAATATTGTGCTGGGGAGATCCAAACATGGTATTGTAATAAATGAGGAAATATAAATCCT TGGATTAGAACCACAAATACATATTGCGCATAGGGGTGGAAATAGGTCAGGCGGCTCGTCAGGGGCCTATGGCTTGGCTC GTTAGAGGCTCGGCTCAGCTCTGCTCGTTTATTAAAAAGGCCAGGCTTAGGCTTAGGCTTTTTTAAAAGCTTGTTTAACT AAAAAGGGCAGGCCCAAACTATTAAAAAAGCCTATTTGGCCTAACAGGCCAGCCTATTTATATATTATTTTTATTAATAA TATAAATAAATATAATATAATAATATATTATTTGATTTTTTAAAACTGATGTATAGTTTAGTATAAAAGAAAACCCCAAG TCCCTACCCTAACCTAGATTAGAAACGTTCCAGACATATTCAATGATACAGATTTAGTTTTTGAAATGCAATGATACAGG TTTTTTTATTTGAAAAGAAAATGCAATGATATATAAAAGGCTTATTAGCCCGCCAGCCTATTCTTTTGATAAAATTGTCT GTTAAATAGGCTTTTAAGCAGGCTTGTAGGCCAGGCCAGGCCTTAGAAAAAGCCAGGCCAAACCACAAAATTTGGCCTAT TGATAGGCCACAGGCCAGGCTTGGGCCACGAAAAGATAATGCAGGCCAGGCCTAGGCCACGCAAAGCTTGGCTCGGCTCG GCCTATTTCCACCCCTAATATTATTTGTGCACATACATGATGAAAGTGTTCATGATGTAATACCTCATTGTTGCTTTGAA TACCTTAAACTGCAACATAAACTTCACCCCTACCCCCCTTCCTTAGGAGATGTAGGAACTAGGAAGAAATGTTACTATTA TGTTGGGGTTAGCATATTAAAGTTTGATAACTTGACTTAGTCATTGAATCAAGCTCTATTTAAATGGCAGTTCTTTGTTT TTCTCTCAGTTATTTTGATGATTGCTTATCCCTGACATGTAATTTTTCGTCTCTCTTCAATATGAATTATTTTTATTTCC TAAAAATAATAATAATAAAAAATAAATAATGGTAATGATAATAATAGTGGAAGTCACACAACTTGCAATTATTTTCCTTT CATGGCTATTTCTCCTTGCATATGAAGCACAATGTTTACATCCCGTCAGCTTATGCCTGTTCGTTTCATATTTACTCCTT GAATGCTACCAACACGATCTTTTAAACACTATCCAACACATTTCATGTGATTGGTTTATTTTTCAAAAAGTCAACACATT TGCCTCAATTAAAAAAATGTGTAGACTTTACAAAAAATATACTAATCACGTGGAGTGTGTAGGAGAGAATTTTAAAAAAG TGTGTTGTTACTTGTTAGCATTTTTCTTACTCCTCATGTATGGTTTCTTGACTCCCCTTGTGCTAATTAAGTACTTCCTT ATCAGGCAATCTATGTTTTTGGATTTGGGGTCCCATTGTTCAATAATGATGTTGGAAGCACTGATACAATCAAGTGGTGC TTGTGGATAGTACATAAATTATTGCTCGCTGCAGCATATGGCTTCATTTTATTTGTACACTTCTCTAAATGGAGAGAAAA GCTGCCTCGTGAGTATAATGTCTTATTCAGTTGTCTGTTATAATCTAAACGGATTCATGTACCAACTTGAAATTTTGTGT CGCCTTTGCAGCGAGGCCAGCTTTTTACAACTACGTTGTTGTGATGTTTGTCTTCAGTGCTGTTACTCTGTTTGCTTGTG GGCTATCAGGAATTGGCGCTGGCCTTGGCAGTTGGTAAGCCTATATCTTTTTTGTAACTAGAAGGTGTACTCAGTTATTA TCTCTAAATGATGGATTTTATGTTTATTTGCAGGTTGTATAATCTTACTGTGCTTTGTTATCACTCATTATATCTTCCAT TTCTGTATGTAACTTTTCTAGCAGATTTTTTCCAGGCAAGCACTCTAAGATATTCACTGTTTCTTTTTGGTTTTCTATAA TATGTGCATGAACATTATATTATGTGTTTGCACTTGGTGCAGGAGGAAGATTTCCTTTTGGATAACGCATATTACTCTGA AATGAAAGATGCTGGATTCTTTGATGCTGAGTGGGAATAATTCCTCAGCAACTTCTAAATGGAAGGAAGCAAAATCATCT TTTGTTCTCTGCACTGTAAATATTTAGACTCTCTAACTAAAAGTCAAGTGAAGCTCTGCTCCATCAACTTCTTAATGATA TGTTGAATCTGTATGACACTATGACCCTACATCCTCCTTTGTAATGTTGCTAAAGGAATAGTGCTTTCGAACTCCATCAT ATTTCTATCATCCAAGAATACAGGAAACAAGAAACCAACTGGTGCTTGAAAATCAAAATCAGCCTCAAAATCCAAACTAG CATTGATATTTGCCAGGCTTCAAATTCATAAGTATCTATTCAAAATACAAACTGAAAATTAAAGTTCTTGAACATCTACT CCACTATCTCCCTATTCAAGACTGACATGATAAGCAATTACATGTTCAAGGCACACAATGAGCACTGCATTTTATAACAT GCACCTCCTGACCTGATGGATTACTTGCTATGCAAGACCTTCAATTTTGGAGAATGTTATCCGTCTTAGAATTCAGATTA GATCTAACTCCACCTTAAAAGCTAGGTCATGGAGATGATTTCTATCTTATGTAAAGATTATTTAGATCATATTTCTAGTC AATTCAGGACCTTTTACACTCGGCATGAGAGGGATCTCTTTTGACTTTGATGATTTAATCTAATAATGTAAATTATTTGA TATAGGCTGGTGAATTATTCTTTAGATTTTTTTGCATTAAAAAGCTGTTTCTGAATAAGATTCTTTCTAGGTCCAAACCA TTGAAAGGAATTTTGTTGCTAACTAGTTTGTATCTAATTGTCATAGTCTCATAGACCTCCTTTACTCTTAAAAGTTATAA AACCTAACCCAGATTTGTGTTGACTGACTCTGCC
CDS sequence (LotjaGi4g1v0254100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAAGGAGCGTGGAAGAGGAGATCAAGATCAACAGCGATGTGGTTGATCTGAACTGCAACGGATACGACACCTTCCT TGTCGTTTCGTCGGTTCTGTTCATCGTGTATCTGGTGGTGCGCGCCAAGAAGAACTTCAGGAGGCTCTTTCATGGTGGCT CATACATTTTGATTTCCTATTATGCCCTCCTCTGGCTTGTTACCCTTTTGAACCTCGCTTGGTCTTTTCTTCAGACATGG CAGTGTTCTCCCGGAAAGCAGGTTGCATGGAATCTCCTGTCATTGTTTACGACATCTGGTATGCTATGTCTAGAGATAAG CTTGATGGCTTTCTTACTAAAGGATAACTACATGAATGCCATGGAAGCTCTAGCACACACTTTCATTGTATCAGGAATTA TTGTCTTTGTGGATATCCTTCTTAAGGCAATCTATGTTTTTGGATTTGGGGTCCCATTGTTCAATAATGATGTTGGAAGC ACTGATACAATCAAGTGGTGCTTGTGGATAGTACATAAATTATTGCTCGCTGCAGCATATGGCTTCATTTTATTTGTACA CTTCTCTAAATGGAGAGAAAAGCTGCCTCCGAGGCCAGCTTTTTACAACTACGTTGTTGTGATGTTTGTCTTCAGTGCTG TTACTCTGTTTGCTTGTGGGCTATCAGGAATTGGCGCTGGCCTTGGCAGTTGGTTGTATAATCTTACTGTGCTTTGTTAT CACTCATTATATCTTCCATTTCTGTATGTAACTTTTCTAGCAGATTTTTTCCAGGCAAGCACTCTAAGATATTCACTGTT TCTTTTTGGTTTTCTATAA
Protein sequence (LotjaGi4g1v0254100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSRSVEEEIKINSDVVDLNCNGYDTFLVVSSVLFIVYLVVRAKKNFRRLFHGGSYILISYYALLWLVTLLNLAWSFLQTW QCSPGKQVAWNLLSLFTTSGMLCLEISLMAFLLKDNYMNAMEALAHTFIVSGIIVFVDILLKAIYVFGFGVPLFNNDVGS TDTIKWCLWIVHKLLLAAAYGFILFVHFSKWREKLPPRPAFYNYVVVMFVFSAVTLFACGLSGIGAGLGSWLYNLTVLCY HSLYLPFLYVTFLADFFQASTLRYSLFLFGFL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 21 | 21 | - | – | |
| PANTHER | 7 | 260 | 254 | 6.9E-137 | ||
| PANTHER | 7 | 260 | 254 | 6.9E-137 | – | |
| TMHMM | 21 | 40 | 20 | - | – | |
| Phobius | 22 | 40 | 19 | - | – | |
| Pfam | 23 | 261 | 239 | 2.1E-88 | ||
| Phobius | 41 | 51 | 11 | - | – | |
| Phobius | 52 | 77 | 26 | - | – | |
| TMHMM | 55 | 77 | 23 | - | – | |
| Phobius | 78 | 88 | 11 | - | – | |
| Phobius | 89 | 113 | 25 | - | – | |
| TMHMM | 90 | 112 | 23 | - | – | |
| Phobius | 114 | 124 | 11 | - | – | |
| Phobius | 125 | 148 | 24 | - | – | |
| TMHMM | 132 | 154 | 23 | - | – | |
| Phobius | 149 | 167 | 19 | - | – | |
| TMHMM | 167 | 189 | 23 | - | – | |
| Phobius | 168 | 189 | 22 | - | – | |
| Phobius | 190 | 200 | 11 | - | – | |
| Phobius | 201 | 225 | 25 | - | – | |
| TMHMM | 204 | 226 | 23 | - | – | |
| Phobius | 226 | 230 | 5 | - | – | |
| Phobius | 231 | 254 | 24 | - | – | |
| TMHMM | 231 | 253 | 23 | - | – | |
| Phobius | 255 | 272 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0254100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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