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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0255500 |
| Transcript ID | LotjaGi4g1v0255500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nuclear transport factor 2 family protein with RNA binding domain; TAIR: AT5G60980.1 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein; Swiss-Prot: sp|Q9UN86|G3BP2_HUMAN Ras GTPase-activating protein-binding protein 2; TrEMBL-Plants: tr|A0A151SPE4|A0A151SPE4_CAJCA Ras GTPase-activating protein-binding protein 1; Found in the gene: LotjaGi4g1v0255500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:60934628..60942781) extracted from Lotus japonicus Gifu genome v1.2.
GATCGAGGAAAGTGTAATAAAAAAACAAAAAGAGGAGAGGCATCTTAGAATAGAAAAAGCAATAGCGGGAGTCATCGTCT GTTGTTGTGATCTCCGAACACAAACTCAACTCAACTCAACTCAGCATCAGAATCTCTACTCTCTCTTCCTTCCCCAGTTC ACCCTCCCTCCCAACACTCTCTTCTCTTCTCTTCTCTTCTTTCGATCTCTCTCTCACTTTCTCTAACATCTTCAACCAAG CAGGTACACACGTGCTTCAACACTTTCCTTGTAATTGTTTTCGTTTATACCATTGTTTTGTTTGCAGTTAGCTGAACTTG TTATCTGTCTGATCTGTCAATGTTTTGTCTTTTAGGACAAACTTCCTCTTCCTTTCCTTCAAGGAATGATCTACGCTATG TTCTGCCCATGGAATTTCCTTATTTTTTTATATTATTTTTCATGATTCGCAGCTTTTGCTTTTCTGTTCATGTTGTTGGT CAAACTTAGATTTTGTTTTGGGTTTTGCTAGGACTCTGTTCTTCTCATGATTTTTGGGTTTTCCATTCTTAATTCTGTAT CAAATTGTTTAGCTATTGTCTGGGTTGATTGACTTGATTCATTCCATACATTGATCCTTTTGTTTTGTTCTTGTAGTCAT GATTTTAACACTCCCTATGTGTACTTGTGTTGTTTGCTCAGGTTGTTTTATTATACTAACACTTAGATATTGTTTACTGT CCTCTAAGTTGACTTGGTAAGTCAGTGATTTAGGCATTATGATAATTGTATCAGAGACCCTTCTATTTTTTTCAAATAGC TGCAATCAATTCAGTTGTTCATCCTTTAAGGGAGTTGTGTTTTTGCGGTTTGCAATTGCGAAGTTTCATTCATACCTATC TCCCAGTACCAGATTTGTGTTGTTCCTTCTATTTGTAGGTTCTGATCTGGTGCCTTACAATTGCTATCACCGTGTATTAT GCTTTCAAGACACTGAGACTTTGTTTTTTGTTTTTCTTCATGTCATATCAGCTATGCAAGTTATTCTATCAATTTTTTGA TGGGGTGGGGCGGAAAATTCAATCGTTCTAGTCCTTTCCACACCCAAAATTTATCCATCATTAATGATTCCTTATGCTGT ACATTAATGTGAATTATTGTGCAGATGGCAACGCAGGAAGCAAGCCCTGCCACTGCTCCAAGTGCTCAAGTTGTTGGCCA TGCCTTTGTGGAGCAATATTATCACATTCTGCATCAATCCCCGAACTTGGTGCACAGATTTTATCAGGAATCAAGTTTCT TAAGCAGATCAGATAGCAATGGTGTGATGACAACGGTGACAACTACGAAAGTAAGCCCACCAGGATATGCATGTAAAATT CAATTGTTTGATTATAAATGCCCATATTGTTTAAATCCAACTGTATTTTAGACACTCATCAAAATTTTAAAATTTGTCAA AGTAATAAAGAGATGAAATACAATGGAAGTGTTATTGAGTCCTTAGAATTAGATTCGGCGTGACCATTTTCAAAAATAGC TCTTTCTGACATGTCACGCATTATGCTTTTTCATCTTTGCTTTATTGATAAAGTTAAGTGGGCTGTATTTGACTGGGGAA TGACTGAAATAAAAACGTGTCCATCAAACCACCAGATGACGGATTTAGGGTTCAAAGGTTATATAGACTTGTAGCATGGG TTTTAAGATTACTGAATTGATGTTTCTTAGTTAACTTTTGAATTAAAGGTATATGAATGTAGGTATAATATGTTGGAGTT ATGAAAAAAATCTGTGACGGGAGTTGTGAATGCTATCCAGCATGAGTTCCATGGGCTGTTTGTCACATTAATTTAAAAAC TAAATAAGATGCGAGTTTTATTCAAAATTTATGTGGTTACCATACTTAATAAAGAGAAAAACTTGGTTTTAGGATTGTTC TAAAATAAAATTTTGATAGCATAATTATGCTTTAGAGATTTTGTTAAAGTTATGACAAAGCACCCATTGTATGCAAAATA AAACTAAGAGATGACTGGCAATAAAAATCATCAGAGTCTTCTTTGGAACAAAACTTAATTTGGGCTAGGCCTAACTTTAG GCCAAAAGCTAGATTAGGGGTAAGGATTGATTTATCCTTTATAAGAACTTATTAGTCATATCTCTAGTCAATGTTGGACC TCAACACCCCCTCACACCCAGGGCTGGACATCTGGAATGTGAAGTTTGCAGGGGGCCCATTTATGGGTGGCCCAATAACA AATCTAGGATAGACTTTGACACCAACTCAGAATTTGGATTGCTCTACGCTTTATATGTACTTATTTAGCTATATCTCTAG TCAATGTTAAACTTTAACACACCTCTTTACATCCAAATCTGGATATATAAAGCGTGAAGTTTGCAGGATTGGACATCTGC GGATGACCCATTTATGAGTGGCCCAATAATGAATATAGGATAGGCTCCGGTACCAGCTTAGAATTTGGACTAGGACTAGT TCTATTCCAAAAGCTAGCTTAGGGGCGAGGATTGCTCTACCATCTATAGAAACTTATTTAGTCGCATCTCTAGTCAATTT GGGACCTTAACTAAAACAATTGCAGGGTTAGAGGATGCTATGTTACAGATTACATTATATTCATTTTGCCACAAAATTTG TTGCCATGAAGGATAGGTTACTTTAGTCCAATTGATATTTGGACCTTGGTTATAGATTATCAACAAAAGCAGTAAAGGAA GCTTAAACAGGACCTGTGTCTTGTGTGCATGATTTGCTTAGCAGCACATCACTCATTTTGTGTGTGTTTGATTTACAATT TCCAAGTGCTCAAACTTATGTTCACCTCCACACTACCAATTTGTTCCTTTCATGTTACCTAGCTTTGGTACATGTCCAAC GGGTTCACAAGCATAGCTTTTATAGTTAAGTTGTAATGTATTATATTAGAATGATCAACTTGACAACTTATATAATCAGT TTACTTTCAGTCCTATACCTCAATATTCTCTTTCAAACTACAATCCAGTCATTCTTGAGCTTTATAATATCTACTTCAAG CATATTTTGCAAGAGCAATAACTGAACATCCATATGTTGATTATTCAAACAGTTCTATATTTGGGTGGGACTAGTTGTTC TATGAACTTATTTAGCTCCTCCTCCTTGATCTTAAACCACGATATCTGAAACATATTATACTTAATTAAATACTGTTGGG ATGTAACATGTCTAGCTTGTATATTGATCGTACTTCCCAAAAAGCTTCCTATTAATAGTTTGGTTTCTGAAGAATTTCAT TAATAGACAGTAAATGCTTGAGTTGCATACTTCAATTCTGGGCTTGTGTGATTTATTTTGAACTCATTAATTAAAAGGAA ATAATTGTTGGATCAGGCAATCAATGAGAATATTATTTCCCTGAATTATGAAGATTATACAGCAGAAATTAAAACCGCAG ATGCTCAGGAGTCGTATGAGAAAGGTGTGATTGTTTTAGTAACTGGATGCTTAACTGGGAAGGATAATGTGGGACGGAAG TTCTCGCAGACGTTCTTCCTTGCCCCACAAGATAAAGGATATTATGTCTTAAATGACGTGTTCAGGTATATTGAGGATAA TGACACACCACAATTAAATTCTGTCCCAGTAAATATCATCAATGAAAATGTTGAGGCACACATACCAGAATCAGGTTAGC ATGACTTTTCTCCATACACACACACACACACACACACACACACACAATATATAGGGGATATATACTCAACAACCTTTTGT TTTGCTTCATCCTCAATTTTTAATTGCTTCTTACATATCTCTAGAGGATATACATGCTCCAAAACATCTTGTGGAAGATC CTACAACTTCTACTGAGGATGAAAACCTTAATGATGGTAATGAAGTTCATCATCCTCAGGACAACGAGGAAGAAGGATCC GTTATTGATGAAGAGGTTGCTGTAACCTCTGCTGATATAAGTCAGAATGATGTTGTTACTATTCGTGAGTCGACTTCTAC AGTCCAGGATGATGCACCAAAGAAATTCTCATATGCATCAATTGTGAGTTTGCCATATATTTTATTGTCTTGTGCTACTC TTTCCTTTCTTTTACATTCATTAACTTAATTATTTTCATTTACATGAAGGTAAAAAGTAGCGCAGCACCTGGTCGTGTCT ATGTTCCCAGCCGAGCTGCAAGGTTGGCATCTGCTAAATCCATTGAACAATCACCTGCTACTTCCAAATCTACGCCCGGG CCTGAGGCATTAGCTCCTAGTAGTGACAGTGTACCTGGGAGTAGCGATATTCATGAAGAAGGTGTATATAAGTGATTGTT AACTTGATTGACTGCTATTTTCTTTTTCAGAGACCAGTCAACTGTGATCTAGACACATGATATTTTCCTCCTTGCTTCTT TGTTTCATCTAATTTTTTACTTAAATTGAAGAGATAAAAACTAATCCTTAGAAGAAAACGAGGTTAAATGGATTGATATA GTTTATAACTCATATACACTGCAGTGCCTTATATTCTAGTTTGAAAATCAATTGACTTGCCTTTTACTTTTAATAGCTGA AGGCCACTCCATATACATACGGAACTTGCCATTTAATGCAACAGTTGAGCAACTTGAAGAGGTCTTTAATAAATTTGGTC CTATTAAACATGGTGGAGTCCAAGTTAGAAGCAGTAAGGTCTGTGTATATTACTATCTTTATCTGCACTTCCAAATAATC TAGGCATTTTCTTGAGGCAAGTGTATGAGCTATGTTTGTATTTTTGGTTTCTTGCAGCATGGATTCTGTTTTGGCTTCAT TGAATTTGAGGATGCGAGCTCCATGCAAAGTGCACTTGAGGTACATAATTTTATAGTTCTATGGTGCTATTTGCCTGTTT TTACATATGGCCGTAAAGAATTATCTGTTTGTGGTTATCATTGAGATTAACATGTGAATATTTCTTAAAATACTTTTAGT TGATTGGTACTAGTGCTATAGATTAGCATTAGCTTGTATAGATGTTTCCTGAAGTTTTTAAGTTTCAGCTTCTGATAGGG CACTTCTGGTGCTGGAAATTTCAGGAATTGAATGTGCTCTTCAGCCTCTGCCTATAAAATATTGTGTATTCTTCTACACG AGCAGGCCTTTATTGAGATGCGTTTGTACAATATATAAATGCTCCGTTGAAATGAGATTGTTGTATTCTTGTATTTATGC TTTGATTGCTTACCTTGCTTAGATTGTTTATTGAGCATGATTAACTTGTAGTAGTTGTGTGAACTGTGAAGGACAAAGAA TATTATAGTTGGAAAGCACATGAGAAGATTTCTCTGCTTAAGATTGGCATGCCCAATCAATTTGTTTGTTGTTCGTGTCA CTTGATACTTCTTTGACATAATGTCTTATTTTGTTTCTTTTCACATGTCACTGCTTGATATGTTATCCGTGAGAACAACT CTAGTTTTCTTTAGCTTGCAGATCCAGGTAATTGAATCAAATAGGAACTTAAGGCTTATTTTAGCTATCCGTGTCTAATT ATTTGGTTTTGAGTGATTGTGTTTCTTTTGGAAGAACAAGTTATCCTCAAATGATAAACACCCTGACTTATAAAGTATAA AAAATCTGCCACCTTCCCACGTGTTCTCTGTCATCTTAAGCTCGTATTATGGTGATATGGACTATGGAGAATGATTAGGA AAAGCTGCAGTGGCAGCGTGAGTGCATGTAACAGCTTTGCTTTTTAGAATGTGGTATGGTATTTGGTTAAGATGCAATAC TGTTTATTGGAGACAAGAAATCAGCAGGTTGGTCGTTGTTGATTTTATGGAGTGTCTTGAGAAGTCCGACATTGACTAGA GATATGCCAAAATAATTATTATAAAGCGAAGAGTAACCCCTCACCCAGCTGACTTTTGGGATAGAGTCAGGCTTAGATAT TTTAAGATGGTATCAAAGCCTATCATAGATCTGTTTATTGGAGACTATTCATGACCCATATATGGGCCACCTGCAGATGT TCATCCCTAAAAATTCCACGCTCCAGATGTCCAACCCTGGGCGTGAGGTTGAGAAGTCTTACTTTGACTAGAGAATAGAG ATATTACTAAAATATCTTATAAGGGGTAGAACAATCCAAACTCCTAAGCTAGCTTTTGTGGTTGAGTTAGGCATAACCCG AACTTTAATAATGATGAGGAAATTATCTACTCTGCTGTTGTCATACATAATGTATATAAAAAAGGGCAACCTGGTGCTAT AAATTTCTGCCATGGTTGGGTTCAGGGAAGGGTTGGACCCATTGTAGGTCTATTGTAGACATCCTTATCTAGCATTTGCA AGATGTGATTACACTCATAAGTCATGACCTCCTAGTTACATGGCAGCAACTCCAACTGATATGCCAAAGCTCCACTTTGC AATATACAGCATCTAAGCCCTATGAAATTTTAATGGCAGTCTCAAACTTGGACCCCTAATACGAACCATGTTGATGTTTT CATGAAGTAGCCTTGTACTGTGCTACTCCTTTACTGTCTGTAAACTATTTGTAAAGATGGGACCAGGTGGAATTTGGGAT GTTATGGACTTTGTACTTCCCCTATACTGGAATTAATGAGTCAATTTAAAAACCATTTGGGTTGTTGGTTAGTGAATTTG TACTTCCCTCTAGGTCTGTTTTAAGTATCTGTTTTGCTGTAACCGGAAGCTTGGCAAAGACATTACTGACATGATTCATT TTTGTGATATAACCGAACTGGAGAATATGCCGGTGTTGAATTCTTCTCTGTACTGTGCAGATAGGAACAACAACTAGAGA ATATGCATGTGATATTTGGGCTAATCTTATAGCATAATAAGTGTTTGGTTAAGCTTATTAAATAACTTATGACCTACCTA TAAGTTTTTTCTGTTTAGTTTCATAATTTTCAGATTAGCTTTTTGAATAGGTATTTATAAGTTATAACTAGTTACAAGTT ATTTTAAGCTTTATTTCAATAAACTTGTGAATAAGTGCTTATTACTTTTAGCGATTAATTAAGTTGTTGACTCAAATGCA CCCGCAAATCATTGTATCTTCATGGGATTTTGTACTTATCTGCTAATAGATGTTAGTAAAATTAATTTCAGGCTACACCT ATTATTGTTGGTGAGCGACAAGCTGTTGTTGAGGAGAAGAGAACAACTACAAGAGGTACACTGATATTTTCACTTTACTT TTGAGTTAAACATGACTTATATTTGATGGAGGTTAAACCAAGGTTTCCAGATAAACTCTGATCAAGTTTTTTCCCTCCCA ATCTTATTCTAGTCAGCGGTAGTGGAAGAGGGAGGTATCCTTCAGGACGAGGCGGTTTCCGAAGCGAGAGCTTCAGGGGC GGCCGAGGGAAGTTTGGTGGTGGACGGGGATATGGCAGGAGTGAATTTAGAAGCCAAGGGGAGTTCTCGGGGAGACCGAG GAGTTCTCAACGGCCAAGTCAGAATGGAGGTGGGCGAGGTGGACGTGGTTTGGGAAACCGCGATTCAACAGTGTGAACAC ATTTGTTAATGAAAGAAGAACAAGGAAACTGGTTGGTTGATTATTTTTCATAAGCCAAACACCTCTTTCTATTCCCCTTT GTTTTGGCACGTTCTGACCTTCACCATTGCAATAATTCAATGGAAGATCAGTGAGTTCATCAGCACTTGCAGAAGTGAGT GCATGTGTTTTTTTTCCCACATTACTGAATACACTTGTTGTCTTCTTCCATTTTAAGTTATATTGAGCGAGAGTGTACCT CCGATTGAGTTGTTAACATGAATCTCCATTGTGGAAGTTTGATATATCATATATGTAAAATTGGAACCAAGTTAATTCCT TTCATCAGTTCATCTTTCTCATAAAGCTTAATGACGTTTTGCCTGTATTTCTGTTTCTGGTAGTTGATATGAGATATTGA GTGAGGTTGTAATGACACTTGCATTACATGATGTAAAAATTCACTACCGCAATTCACAACAACGATGGTTAGAAAGACAA TGGATTAAGAGTTAACAGTGTATATAAGAAATGAGAAAGCGTTTTATAACTTATAAGACAATTCAGCTTTTATAAATGGC TAAATAGCATTTTTGTCCCTCATTTATCACGATTTGACAGTTTTGATCCCTCAAAGGATTTATTAGCCTAGAAC
CDS sequence (LotjaGi4g1v0255500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAACGCAGGAAGCAAGCCCTGCCACTGCTCCAAGTGCTCAAGTTGTTGGCCATGCCTTTGTGGAGCAATATTATCA CATTCTGCATCAATCCCCGAACTTGGTGCACAGATTTTATCAGGAATCAAGTTTCTTAAGCAGATCAGATAGCAATGGTG TGATGACAACGGTGACAACTACGAAAGCAATCAATGAGAATATTATTTCCCTGAATTATGAAGATTATACAGCAGAAATT AAAACCGCAGATGCTCAGGAGTCGTATGAGAAAGGTGTGATTGTTTTAGTAACTGGATGCTTAACTGGGAAGGATAATGT GGGACGGAAGTTCTCGCAGACGTTCTTCCTTGCCCCACAAGATAAAGGATATTATGTCTTAAATGACGTGTTCAGGTATA TTGAGGATAATGACACACCACAATTAAATTCTGTCCCAGTAAATATCATCAATGAAAATGTTGAGGCACACATACCAGAA TCAGAGGATATACATGCTCCAAAACATCTTGTGGAAGATCCTACAACTTCTACTGAGGATGAAAACCTTAATGATGGTAA TGAAGTTCATCATCCTCAGGACAACGAGGAAGAAGGATCCGTTATTGATGAAGAGGTTGCTGTAACCTCTGCTGATATAA GTCAGAATGATGTTGTTACTATTCGTGAGTCGACTTCTACAGTCCAGGATGATGCACCAAAGAAATTCTCATATGCATCA ATTGTAAAAAGTAGCGCAGCACCTGGTCGTGTCTATGTTCCCAGCCGAGCTGCAAGGTTGGCATCTGCTAAATCCATTGA ACAATCACCTGCTACTTCCAAATCTACGCCCGGGCCTGAGGCATTAGCTCCTAGTAGTGACAGTGTACCTGGGAGTAGCG ATATTCATGAAGAAGCTGAAGGCCACTCCATATACATACGGAACTTGCCATTTAATGCAACAGTTGAGCAACTTGAAGAG GTCTTTAATAAATTTGGTCCTATTAAACATGGTGGAGTCCAAGTTAGAAGCAGTAAGCATGGATTCTGTTTTGGCTTCAT TGAATTTGAGGATGCGAGCTCCATGCAAAGTGCACTTGAGGCTACACCTATTATTGTTGGTGAGCGACAAGCTGTTGTTG AGGAGAAGAGAACAACTACAAGAGTCAGCGGTAGTGGAAGAGGGAGGTATCCTTCAGGACGAGGCGGTTTCCGAAGCGAG AGCTTCAGGGGCGGCCGAGGGAAGTTTGGTGGTGGACGGGGATATGGCAGGAGTGAATTTAGAAGCCAAGGGGAGTTCTC GGGGAGACCGAGGAGTTCTCAACGGCCAAGTCAGAATGGAGGTGGGCGAGGTGGACGTGGTTTGGGAAACCGCGATTCAA CAGTGTGA
Protein sequence (LotjaGi4g1v0255500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATQEASPATAPSAQVVGHAFVEQYYHILHQSPNLVHRFYQESSFLSRSDSNGVMTTVTTTKAINENIISLNYEDYTAEI KTADAQESYEKGVIVLVTGCLTGKDNVGRKFSQTFFLAPQDKGYYVLNDVFRYIEDNDTPQLNSVPVNIINENVEAHIPE SEDIHAPKHLVEDPTTSTEDENLNDGNEVHHPQDNEEEGSVIDEEVAVTSADISQNDVVTIRESTSTVQDDAPKKFSYAS IVKSSAAPGRVYVPSRAARLASAKSIEQSPATSKSTPGPEALAPSSDSVPGSSDIHEEAEGHSIYIRNLPFNATVEQLEE VFNKFGPIKHGGVQVRSSKHGFCFGFIEFEDASSMQSALEATPIIVGERQAVVEEKRTTTRVSGSGRGRYPSGRGGFRSE SFRGGRGKFGGGRGYGRSEFRSQGEFSGRPRSSQRPSQNGGGRGGRGLGNRDSTV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 449 | 449 | 1.7E-173 | – | |
| PANTHER | 1 | 449 | 449 | 1.7E-173 | ||
| Gene3D | 8 | 137 | 130 | 5.2E-39 | – | |
| CDD | 13 | 135 | 123 | 4.85959E-46 | ||
| SUPERFAMILY | 13 | 134 | 122 | 5.65E-39 | ||
| ProSiteProfiles | 17 | 133 | 117 | 33.968 | ||
| Pfam | 17 | 133 | 117 | 6.3E-31 | ||
| MobiDBLite | 172 | 199 | 28 | - | – | |
| Gene3D | 172 | 381 | 210 | 5.7E-15 | ||
| MobiDBLite | 183 | 197 | 15 | - | – | |
| MobiDBLite | 263 | 296 | 34 | - | – | |
| MobiDBLite | 265 | 292 | 28 | - | – | |
| SUPERFAMILY | 299 | 408 | 110 | 1.07E-19 | ||
| ProSiteProfiles | 302 | 378 | 77 | 12.918 | ||
| SMART | 303 | 374 | 72 | 3.4E-13 | ||
| CDD | 304 | 361 | 58 | 1.79316E-13 | – | |
| Pfam | 304 | 361 | 58 | 2.7E-12 | ||
| MobiDBLite | 376 | 455 | 80 | - | – | |
| MobiDBLite | 425 | 440 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi4g1v0255500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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