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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0265600 |
| Transcript ID | LotjaGi4g1v0265600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Two-component response regulator; TAIR: AT2G03500.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q9ZQ85|EFM_ARATH Myb family transcription factor EFM; TrEMBL-Plants: tr|A0A0S3R7D2|A0A0S3R7D2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0265600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:63049074..63052856) extracted from Lotus japonicus Gifu genome v1.2.
GGGTAACAGTAAGAAGAATAGTCTTTTGTATTGGTGATAATTTTGAATTAGTACAAAGCACACACTAAGAGATTCTAAAA CCAGGCTCAAAGCACATGACCCTGAAATGTCAGAGAGTCTCTGATTCCTTCTCTCTCATTTTTATTTTTCACACTTTTTT TGCATTGATTCTTTGTAGGAAGCTACTTCCCTCTGCTTTATCCCATGCTTTTTCTTTTGTCTCTCACAAACATGCTTTAT TCCCACTGAACTTCACCCCTAAAAAGAAGACGATCCTCCTTGTGTTTGCAAACGACATTGCTTCCCTTTCTTTGTGTCTC TCTCTCTAGCCCCCACAAGAACTACAAACTAAGGAAGAAGCCAAACACCCTCTTTTGCTCTTGTTTGTTCCCACATACCA CCCCGTTCCTATTTTGGCATGAACATATCTTAAACAGTGCTTGTGAGACAATTGTTGTAGTGTAACTATACCTGAAAAGA ATGGCATCCCCTTCTGAACTAAGCCTTGATTTCAAGCCACATAGCTACTCCATGCTACTGAAATCATTTGCTGATCAAAA TGATCAAACCTACAAGCTTGAAGAGTTCCTTTCTCGCCTAGAGGAAGAACGTCTCAAGATTGATGCCTTCAAGCGTGAGC TTCCTCTCTGCATGCAACTTCTCACAAACGGTACACCTTCAAATCAATCACCCTTTCACAAACATGATTCAAAATCCCCA CTATAAATTAATTAAACATACAGAATCAGGAACCTTACAGATTCAATCATGCATGAAAACATATATCATAGTAGTATTAT ACTATCCAAACTCAATCATGATATTGTCTTCTTCTTCTTCTGATTTTCCTAATAAATTTATACTATTGATAACTACCCTT TTGTCTTCATCATCTCATTTCCTATTCTCTTTTATGTAATTTTTCTTCTTTTTCTTTCCTACCCTCAAACAGAAAAAGCA TGCAATCATAATTTCTTTGGATCATTTTAACAAATAGTTTGGCTACCCTTTTGATTCTTTTGTGTTGGAACAGCCATGGA GGCTTCAAGGCAGCAACTTGAGAGCTTCAGAGTAAATAATCAAGACAACAGACCAGTTCTGGAGGAATTCATACCTGTGA AGCATTTAGCCTCTGATCAAAGCTCTGATCAGAAAGCAACAAACATATCTGATAATAAGGCAAATTGGATGACATCTGCT CAACTATGGAGCCAAGCAAGTGAAGCAATTACCAAACAACAATCCACAATCAAAGAGAGTGATGGTGATATGATTGGATT CAACAACACCAGCCCTAATAAGCTAGTTCTGGACAACAAACAGAGGAATGGTGGAGCCTTTCTACCATTCTCGAAAGAGC GAAACTCGCTGCAAGCTCTACCTGAGCTAGCCCTTGCTTCTGCTGAGAAAGAAATTGAGGATAAGAAACATGCAGATGGA GAGAAAGGAGGGTCTTCATGTCAGAAGAGGGAGAGTAATAATACAGGCAATAATGATGGAGTTGTGATTGATCAAGCTAA AGAAAATTCAGTAGCATCCCATGCTCAAAACACAAACAACAACAACAACACTCAAAATCAAAATCACAGGAAAGCAAGAA GGTGTTGGTCACCAGATTTGCACCGCAGATTTGTCAATGCCCTTCAAATGCTAGGTGGATCCCAAGGTAATTTGGATTTC AGTTGAACTGAAAACGTGTCTTAATTTTGTTTTTCCAATCCGCGCTAAACTCAAGGTGTCTAATTCTAATTTTTTTCATT AATACCTTAAGATGTTTATCTGAGATTATGCAAAAAGAAAAAAAATCTGAATTTCATATATTATGATATTGATATTATGA AGATCATGATTAAGTTGTGATATTTGACTGCAGTGGCAACTCCAAAACAGATAAGGGAGTTGATGAAGGTTGATGGTTTG ACCAATGATGAAGTTAAAAGCCATCTGCAGGTACTACTATTTCTTTGTTTCTCTCTCACTCTCAGTACTGTCTGCACTGC GATAATGGACAAGCACCTTTGTTGTTGTTGTACTATTTTCAGTACCTCTCACTCTGACCAATGACAACATAACATTCTGC ATATCCCAACTAACTTTTGGTGATTTGTTTGTGTTTTATAACATCCATGCTATATGGCTCCACAAATCCATTTGCACCAG TCAAAGTAAAACCAGGGTAGGGTAGGTAGGAAGTTTAAGGGAAAATATTTCATAAATGGATAATTATCATATTTGGCTAA GTATAATTTCCGTTTTTGTCTATAAACTTTCTGATGGGCTAAAATTTAAATAATCTGATATTGTATGATCTAAATTTCAT TTATAAAAATAAAATAAAAAATGTATGTAACTTTGAATGCATTTATCATACTCAATGAGTGTCGATTGCACGAAATAAAA GTGATTTTTTTTATATTAAAAGTTCATGTCTTTAAGAGTTCCACGATCTTAGGGAAATTGTGAGAACAATTTAGTGCAAA CAAAAACACTTTGAATGCATTTATCATAATCAGGTTGATTTATCTAGGGTGAGATTATTTAGGAGAGATTTTTAGAGCTT TTTAGTGCACGTTTGTATTAATGTTGTCAAAATTGCTTGTTGAAAGAAATGATTTCGATAAAACTAATTATTTTAAAGTT GATAATTTATGTTTGGATATATTTACGATAAGTCAGTTGTAAAATCTAGCAATTGATTATGTAGGATAGAAGTTGGATTT ATAGTTTACTTTTACCTTAAAATTGATACTAATTGTGAAAAGAAACATTGAGCATCCAAAAATACAATGAAAAACAATGT TATGATTTGTAAACATTGAACCAAACATGCATGCTTTCAGATTTAAGCTTCCTGAAAATTTTAAATTTCAGCTAAAAAAA GGTTGATCCAATTTCCTTTTTTTTCTTAACAGAAATATAGGCTTCACACAAGGAGACCCAGTCCAAGCCCACAATCAGGT GCACCAGCAGCACAACTAGTGGTCCTCGGAGGAATCTGGGTCCCACCAGAATACGCTACGGCGGCGGGCCACACAGGCAC CCCCACCCTCTACGGCGCACACCCTGCCTCTCACGGGCCACCACCACACTACTGCCCTCAGGAGTTCTATACCACAGCGC CACCACAACCATTGCTTCCGCCGCCTCCACGACACCAACACCACAATTATGTGTACAGGACCACTGCCCACGGCCATAGG TCACCGGAATCCGCAAGGGACCCGTCGGAGAGCATAGAGGATGGGAAGTCAGAGAGTAGCAGCTGGAAGGGTGAGAGTGA AGGGGACAGAAAAGGGCTGGCTGCAGAGAGTAATGAGAGTGAGATCACTCTCAAATTCTAAGGCTCATGCAGTTTTCAAA TTAGGGTCTTCCTTGCATGTTCAACTATTCATCATAACTATGAACAAGAAGAAAAAAAAGTTTGGTAGAACAAAAATATT CTTATTTATCAGATGACTTTTCTGTAGTAGAGACCTTACTGCATAGGGTAAAAAGGCATAAAAGTGAGCAATAACAGTTT TGTTTTACTTTACTATGCACTTCTTTGATGCTTTTAGCATTTTCTGGATCTGGGTTATAAATTTGCCCTTAAATGATGTA GTTATATAACAATGTTAAACAGCTTCTATATATATAAGTAATTTTTCAAGCCAAAGTGTTAAGGTCATTGAGTCATTACA TGCTAGTGATTAGTGAAGGGTGTTTTTCCTTTTTAACTTTTTTGTCTAAATACTTTTCACATTGTTTACTCTGCCTTTTA CGCATCTCTAAGACTCTAACATA
CDS sequence (LotjaGi4g1v0265600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCCCCTTCTGAACTAAGCCTTGATTTCAAGCCACATAGCTACTCCATGCTACTGAAATCATTTGCTGATCAAAA TGATCAAACCTACAAGCTTGAAGAGTTCCTTTCTCGCCTAGAGGAAGAACGTCTCAAGATTGATGCCTTCAAGCGTGAGC TTCCTCTCTGCATGCAACTTCTCACAAACGCCATGGAGGCTTCAAGGCAGCAACTTGAGAGCTTCAGAGTAAATAATCAA GACAACAGACCAGTTCTGGAGGAATTCATACCTGTGAAGCATTTAGCCTCTGATCAAAGCTCTGATCAGAAAGCAACAAA CATATCTGATAATAAGGCAAATTGGATGACATCTGCTCAACTATGGAGCCAAGCAAGTGAAGCAATTACCAAACAACAAT CCACAATCAAAGAGAGTGATGGTGATATGATTGGATTCAACAACACCAGCCCTAATAAGCTAGTTCTGGACAACAAACAG AGGAATGGTGGAGCCTTTCTACCATTCTCGAAAGAGCGAAACTCGCTGCAAGCTCTACCTGAGCTAGCCCTTGCTTCTGC TGAGAAAGAAATTGAGGATAAGAAACATGCAGATGGAGAGAAAGGAGGGTCTTCATGTCAGAAGAGGGAGAGTAATAATA CAGGCAATAATGATGGAGTTGTGATTGATCAAGCTAAAGAAAATTCAGTAGCATCCCATGCTCAAAACACAAACAACAAC AACAACACTCAAAATCAAAATCACAGGAAAGCAAGAAGGTGTTGGTCACCAGATTTGCACCGCAGATTTGTCAATGCCCT TCAAATGCTAGGTGGATCCCAAGTGGCAACTCCAAAACAGATAAGGGAGTTGATGAAGGTTGATGGTTTGACCAATGATG AAGTTAAAAGCCATCTGCAGAAATATAGGCTTCACACAAGGAGACCCAGTCCAAGCCCACAATCAGGTGCACCAGCAGCA CAACTAGTGGTCCTCGGAGGAATCTGGGTCCCACCAGAATACGCTACGGCGGCGGGCCACACAGGCACCCCCACCCTCTA CGGCGCACACCCTGCCTCTCACGGGCCACCACCACACTACTGCCCTCAGGAGTTCTATACCACAGCGCCACCACAACCAT TGCTTCCGCCGCCTCCACGACACCAACACCACAATTATGTGTACAGGACCACTGCCCACGGCCATAGGTCACCGGAATCC GCAAGGGACCCGTCGGAGAGCATAGAGGATGGGAAGTCAGAGAGTAGCAGCTGGAAGGGTGAGAGTGAAGGGGACAGAAA AGGGCTGGCTGCAGAGAGTAATGAGAGTGAGATCACTCTCAAATTCTAA
Protein sequence (LotjaGi4g1v0265600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASPSELSLDFKPHSYSMLLKSFADQNDQTYKLEEFLSRLEEERLKIDAFKRELPLCMQLLTNAMEASRQQLESFRVNNQ DNRPVLEEFIPVKHLASDQSSDQKATNISDNKANWMTSAQLWSQASEAITKQQSTIKESDGDMIGFNNTSPNKLVLDNKQ RNGGAFLPFSKERNSLQALPELALASAEKEIEDKKHADGEKGGSSCQKRESNNTGNNDGVVIDQAKENSVASHAQNTNNN NNTQNQNHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSPQSGAPAA QLVVLGGIWVPPEYATAAGHTGTPTLYGAHPASHGPPPHYCPQEFYTTAPPQPLLPPPPRHQHHNYVYRTTAHGHRSPES ARDPSESIEDGKSESSSWKGESEGDRKGLAAESNESEITLKF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 426 | 426 | 3.7E-162 | – | |
| PANTHER | 1 | 426 | 426 | 3.7E-162 | – | |
| Coils | 33 | 53 | 21 | - | – | |
| Coils | 58 | 78 | 21 | - | – | |
| MobiDBLite | 190 | 205 | 16 | - | – | |
| MobiDBLite | 190 | 254 | 65 | - | – | |
| MobiDBLite | 206 | 250 | 45 | - | – | |
| Gene3D | 247 | 309 | 63 | 2.4E-25 | – | |
| ProSiteProfiles | 247 | 307 | 61 | 13.629 | ||
| SUPERFAMILY | 248 | 308 | 61 | 6.27E-17 | ||
| TIGRFAM | 250 | 305 | 56 | 1.2E-26 | ||
| Pfam | 252 | 303 | 52 | 9.4E-6 | ||
| MobiDBLite | 346 | 442 | 97 | - | – | |
| MobiDBLite | 395 | 432 | 38 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi4g1v0265600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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