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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0266400 |
| Transcript ID | LotjaGi4g1v0266400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | E3 ubiquitin-protein ligase MARCH1; TAIR: AT1G11020.1 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|Q6NZQ8|MARH1_MOUSE E3 ubiquitin-protein ligase MARCH1; TrEMBL-Plants: tr|I3T6H9|I3T6H9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0266400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:63131271..63134474) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAAGGGGAAGTGCAACTCCAACCTCCTCCGATTATGCAAAACCCTAGTGATTCCGACCCTTTACTCCTTGACCATGA TGAGGATGAGTCCCCTTTGAGCTCTGCTGAGATTAAGGATGAGGAGGATGTTGAGGCTGGTTCACTCCCTTGTTGTCGAA TTTGCCTCGAAAGCGATTCCGACCCAGGTGAAAATTCTTACCAAAGTTTGCAAATTTATGCTGTATTTACTCTTTTCTGA TCGGAGTTTGATGTGAGTGTTAACTTCTGAATTGTGGGTATTTCTTTGTAGAAAGAGTTCTTATCTTAAGTCTTAACCCT GTATGCAAAATTTTATTTCCTTGAATGATCAAATAAGGACTTACTTAGGTAGAGTTTGATTTTGAACCATATGTTTTGGA GAATGCAGTGTGTGTGTGTCCTTAAGATATGAATCAGTGGATTGATGCCGGCACTAAATTGGTGACGTTTCGATCAAATA CTGTGGTTTTTGTTCCTCCCTAGCATTATGTGGCTTTGATTGTTCCATACAATTGAAAACTAATGTCTCGAATCGATGTG TTTTGCTTTGTTTCTGAATTAGAAGCTTGTATGTGGGTACTGCTTGTTGTGCTAACTTTAGCTAACAATGGAGGCTGAAA TTGTACAATTTAGCTCTTCTTATATGTTATAATTTGATAGCGTAGAGGTTGAATACATTTCCATTTTAATTGTTGTTAGT TTGTGAAAATCAATAATGTGATTAGAGTAAAGCAAAATATCTTCTGCATTTACCAATAAGTCCTAAAAAATAGAATGATG ATGAAGTTTTTCTTTTCCTCACTTAGATTATGGCATATCATTTAACATGAGTCGAGACATCAGAGAAATATTGTTGATGC TACAATGCATCAGATAAATGCGAATGATGTTAGCAAACAAAATTATGGGTCTCATTATTTAGGTAACACTAGTTTCACTA AACCAAATTGTTGTTTGATTTTGTAGAAGATGAATTGATATCTCCATGCATGTGCAAAGGGACCCAGCAGTTCGTCCATC GTTCATGTCTTGATCACTGGCGCTCAGTTAAGGTATATACTTTGACACTGGTTTTGGTGTGTAATTTTAACTGCTAGTCT TGATTGGTTGAGAGATCAAATGATAATGACGTAAACTTTTTATTTTGTGCTTCTTAGGAAGGATTTGCCTTCTCACACTG TACCACCTGCAAGGCCCAATTTCATCTTAGAGTTGAATCGTATGAGGACAACTCTTGGCGTAAAATAAAGTTCAGACTTT TTGTGGCAAGGGATGTTTTCCTTGTTTTTGTTGCTGTACAAACTGTATGTATTATTAACTTTCTACTCTTTGTTTCATAT TGAATGAGTATTTTTGCATTACTTTTATTAGTTCAGTTTCAATTCTTGTACATGTGCTATAGAAGCTCTTCTTTTAATCC TATCTGTCATCATGGTGAAATGTTAGTTTTTGTAAGAGCTCTTCTTTCAGAAAGAGGATGGTGCTTATCTTGAGGGATTG CTAAACTGAACTTCCATAGCAGTATATTGACATCATAGTATCTATAGATATTGAAGAACAAAATGTTCATCTTTATGGGC TTAGGAATGGTTAGATTAGAAGAGCTGGTTGTGTGGTATGGAGACACCAATTGACATAAGATGAGAGAAGTTATTAGGGC TCAAATTATTAGTAAGTTGTCTGAGGTGATGAAATACAGAATTGCATAGCTAATAAGAATATATTTATATATATACCGTG GTATTTTTATTTCTTACCACTGTACTGGTAATTTTATGCCTCCTGAAAGAATTTATTTTCATTGGCACTCTTAAGCTTTG CTTTTCTTTTTATTTGAAAAAATGTTTTAAATTTGATTCCAGGATTGAACTGTATTTGTTTGGCATATATTGTCATATTT TGTAATATTTGTTTACGAGTTATCTAAACTGTTCTTTTGTTTGGGACGGGGGTTACACGAGAAGTATCTTATTTGGAAGT ATGTATTTATTTGACAGGTGATTGCTGCTATTGGTGGCTTTGCCTACATCATGGACAAAGATGGGACCTTCAGAAACTCA TTTGATGATGGTTGGGATAGGATACTGTCAAAGCATCCTATACCATTTTATTATTGTATAGGTAAACTATTATGGCTACT CAATTTATTTGCTTTTAACCAATGGTTGAAATTCCTCTGCTTTATCCTTTTCATTTTTACTGAAACTAGGGAGCCATATT TCATCATATTATCTTGAGATATTTGTAACCTGCTTTTATTATTTGCCACCTTAATATTTAATTGTTAGCCCAAAGAACAT TGCAAAGAGATTATTGTCCATCATGTGCCTAGTAGTGTCTGGATCCTCTCGTGTTACATTATAGTCACATTGGGGAGAAA AAGACACATGCACAAACAAAATTGTGATTTGAATAAAACCATAAAAGTCAGTAACATTAGAGGCTAAATCTATTTGGGGA ATATTCATTAATATGAAAAAAAATATAATTTCATAAGTTTCATTGCTCTTGGGGAGGGAGAAAAGTGGAAGCGCATTATG CTGAAAAGTTAATTTTAACACGAGTTACTCACTAATCCCTTGGTGGTTGTATTTGTTTGAAAGCTCTTGCTTTTGCTTTC TCTTCATCTCTTTCTCTCTGATGGTTACCAGGAGTGCTGGCCTTCTTTGTACTGATTGGATTTTTTGGTCTCATACTGCA CTGCTCCTCACTCAATTCCAATGATCCCAGAATGGCTGGCTGTCAGAACTGTTGTTATGGATGGGGCATCCTGGATTGCT TTCCTGCATCAGTGGAAGCGTGCTTCGCTCTCGTGGTTGTTTTTGTTGTCATCTTTGCAATTCTTGGTATAGCTTACGGT TTTCTTGCAACCACCATGGCCATTCAAAGAATTTGGCAGAGGCACTACCATATCCTCACCAAGAGGGAGCTTACAAAGGT AATAAATATCCTAGCACTATGTTGATTTTCCTTCTTGTTATATCTTTTACTATAATGATTTTCGTATTTGATATACTATG TAATAAATATCCTTGTACTCTGTCTGTATCTGACACACTGATTTTACTTTGCTTGTTATTAATACTTTCAGGAGTACATA GTGGAGGATCTTGGAGGATGTTATTCCCCACCAAAGTTAGACCCTGAACATGAAGCTCGCTTGAAAATGCTTAAGCTTTT GTGA
CDS sequence (LotjaGi4g1v0266400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAGGGGAAGTGCAACTCCAACCTCCTCCGATTATGCAAAACCCTAGTGATTCCGACCCTTTACTCCTTGACCATGA TGAGGATGAGTCCCCTTTGAGCTCTGCTGAGATTAAGGATGAGGAGGATGTTGAGGCTGGTTCACTCCCTTGTTGTCGAA TTTGCCTCGAAAGCGATTCCGACCCAGAAGATGAATTGATATCTCCATGCATGTGCAAAGGGACCCAGCAGTTCGTCCAT CGTTCATGTCTTGATCACTGGCGCTCAGTTAAGGAAGGATTTGCCTTCTCACACTGTACCACCTGCAAGGCCCAATTTCA TCTTAGAGTTGAATCGTATGAGGACAACTCTTGGCGTAAAATAAAGTTCAGACTTTTTGTGGCAAGGGATGTTTTCCTTG TTTTTGTTGCTGTACAAACTGTGATTGCTGCTATTGGTGGCTTTGCCTACATCATGGACAAAGATGGGACCTTCAGAAAC TCATTTGATGATGGTTGGGATAGGATACTGTCAAAGCATCCTATACCATTTTATTATTGTATAGGAGTGCTGGCCTTCTT TGTACTGATTGGATTTTTTGGTCTCATACTGCACTGCTCCTCACTCAATTCCAATGATCCCAGAATGGCTGGCTGTCAGA ACTGTTGTTATGGATGGGGCATCCTGGATTGCTTTCCTGCATCAGTGGAAGCGTGCTTCGCTCTCGTGGTTGTTTTTGTT GTCATCTTTGCAATTCTTGGTATAGCTTACGGTTTTCTTGCAACCACCATGGCCATTCAAAGAATTTGGCAGAGGCACTA CCATATCCTCACCAAGAGGGAGCTTACAAAGGAGTACATAGTGGAGGATCTTGGAGGATGTTATTCCCCACCAAAGTTAG ACCCTGAACATGAAGCTCGCTTGAAAATGCTTAAGCTTTTGTGA
Protein sequence (LotjaGi4g1v0266400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKGEVQLQPPPIMQNPSDSDPLLLDHDEDESPLSSAEIKDEEDVEAGSLPCCRICLESDSDPEDELISPCMCKGTQQFVH RSCLDHWRSVKEGFAFSHCTTCKAQFHLRVESYEDNSWRKIKFRLFVARDVFLVFVAVQTVIAAIGGFAYIMDKDGTFRN SFDDGWDRILSKHPIPFYYCIGVLAFFVLIGFFGLILHCSSLNSNDPRMAGCQNCCYGWGILDCFPASVEACFALVVVFV VIFAILGIAYGFLATTMAIQRIWQRHYHILTKRELTKEYIVEDLGGCYSPPKLDPEHEARLKMLKLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 130 | 130 | - | – | |
| MobiDBLite | 1 | 41 | 41 | - | – | |
| PANTHER | 1 | 307 | 307 | 3.4E-183 | – | |
| PANTHER | 1 | 307 | 307 | 3.4E-183 | – | |
| MobiDBLite | 26 | 41 | 16 | - | – | |
| Gene3D | 36 | 117 | 82 | 3.9E-18 | ||
| ProSiteProfiles | 44 | 109 | 66 | 22.018 | ||
| SUPERFAMILY | 49 | 107 | 59 | 6.0E-13 | – | |
| SMART | 51 | 103 | 53 | 2.7E-18 | ||
| Pfam | 52 | 102 | 51 | 5.3E-12 | ||
| CDD | 52 | 103 | 52 | 2.0032E-21 | – | |
| TMHMM | 130 | 152 | 23 | - | – | |
| Phobius | 131 | 151 | 21 | - | – | |
| Phobius | 152 | 176 | 25 | - | – | |
| TMHMM | 175 | 197 | 23 | - | – | |
| Phobius | 177 | 197 | 21 | - | – | |
| Phobius | 198 | 232 | 35 | - | – | |
| TMHMM | 232 | 254 | 23 | - | – | |
| Phobius | 233 | 259 | 27 | - | – | |
| Phobius | 260 | 307 | 48 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi4g1v0266400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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