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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0267900 |
| Transcript ID | LotjaGi4g1v0267900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tetratricopeptide repeat-like superfamily protein, putative isoform 1; TAIR: AT5G41950.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q8N0Z6|TTC5_HUMAN Tetratricopeptide repeat protein 5; TrEMBL-Plants: tr|V7CDJ7|V7CDJ7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0267900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:63322462..63326016) extracted from Lotus japonicus Gifu genome v1.2.
ATTAAGTCAAACTCGTCTAGACTAGTCCCATGAACACCATAGTCACATGCATAACAAAATTGACAAACGACTTGTGTTTG GCAGTGCGGTTCATTGACAATTTTAACCCTCGAATATACGACATCAGACATGTCGTTTGTTTAGTTTCGAATTCCGACAT CATCGTTCTGAATCTGTCGCTGCAACTTGCAACTGAGAAGGAATGCACAACAGCACACAACAAGATTCGATGCAATGAAC TTCGTGATTTCAAAGAATCCTGTTAATCTTCTCAACTATCACTCACCGTGTTCGCTTCTTCGTTTCCATGTTCCTTCGCT TCTTCGCAGTTCAACCACGAAATGGACACGTGGCTCTGAAACTCTCAGGTTGAGAGCTTCGTGTGCTTCTTCTACCTCAG CTGGTTGCTATGGAGGCTGGGATGATCTTAGCGGCTCAGAAGCTCCAGGTGAGTTCGATACGTTGCGCGATTTTCTTGTT TCAATCGGAATCGATGATAGGAAGCACGTTTTCGTGTTTTTATTGGGCCTTGTTTGTGCGATGGCGATTTCTAGAGTTAA GGTTTCTACTTTCCTTGTTCTTCCTGCTTCCGTGTTGCTTTTAGCTGTTGGATTTGCAGCAGGGTCTTTTCAGAATGGAA CCTTTGGTGAAGTGAGGGTGAGTGGAAGTAAGAAGAGGGAAAAGGAAAAGGAGGAGAATTTGAAATTGCCCTTTGAGAAA TTGAGGAGCGTGGATGAATTTTTTGATGAGATTGATCTTGTGATTGGTAACTTGAAGAGTGATGTTCAAAGTGCTATCAG GAATAAGAAGATTCAAGTGGATGATTTGTGTGGTTATGTTGAAGTCACTGATAGGATAAAATTGTCTGCTTTGAATGCTA GGAACATTGTTAAGACTTTAATCGACGATGAGGAGAAGGCTAACGGCGCGTTGGTTGAGAACCATAAGAGCGGTAGAAGG AAGAAACAAGTTGGAGAAGCTGGGTATCAGATGTTAAAATCTATTAGTAGTTTGTTTGGGGATGATTTGCGAAGCTCCAA TTCCACCAAAGTCAGGGAAAATGTGGACAGAGAATTGGATCAAACTAAAGGAAATGGTGGTGTGCCGCCAGTTGAAGATA GGACTTTAAATTTGGTTGATGATAGTAAAGCAAATGGCAAGTTGGGTTCTTCTCAAGACTTGGTTACTGATTCTGTTTTG GGTATGGGCAGATATGGAAGAATGAAAAACAATCCTGAGATAGAAAGTTTTGACTTGGGGGACAATCGCAGAAGCACTAA CAAGTTCCCTGGTGAAAATAAGTATAGTTACCCGAACAAAGGATTGAGGTTCACAAATAATCACAGCTTCTCTTTGAAGA TGGATTCGAGCAGCACGACTGATATGTGGGAATCCCGCGACAATGTGCTTGATTCTGAAGGCTTTAAAGTCAGAATGAAA CACATGGAAAGCGAGTCTTCCTATATGCGCAAGGAGTTGCTTGATCAAAGCCATGAAACTTTCAGGTCTTCTCACGACAA GAGGGAGAGTATGTCTGATAGATCTCGGTATGCACAGGATAGGGTGGATTATGGTGACCATCGCCATCTTGCCAATGACT TGTCTGAAGGTGAGAATGAATTCAATTCCCCTTCATCTGCAAAAGTCTCAGATGATGTGATGTTTGATAGGTATCTTGCT GAAGCAACAGACCTTCTAAAAGAAGCAAAAGAGTTTGTTAAGGGTAGACATGATGAAAAGCAAGCTGAAATCCTGTTATA CAGGTCTGCAAACTTACTATCCAAAGCTGTGGACTTGAAACCAATGAGTTTATTGGCTGTGGGACAGTTAGGGAACACTT ATCTTCTTCATGGAGAATTGAAGTTGAAGATTAGCCGTGAATTGAGAACTCTTCTTTCAGGAAGAATCCAACCATCATCT AGAAAGCATAGAAGAATATTGAATGAACTGCAAACTAATATTACCAGTGAAGAAGAAGTTACACAATTGCTTATTGATGT GTGTGAAGAGTGTGAAGAGCTACTGGTTGAGGCAGGTAGAAAGTATAGGTTGGCGTTGTCAATTGATGCAAATGATGTGA GAGCCCTCTATAACTGGGGCCTTGCTCTCTCTTTCCGTGGCCAATTGATATCGGATATTGGGCCGGTATGCATTATTATC TTAATATCGTTAAATTTACCTGTTTTAGCTCTTTAATCGCTCAGTTGATTACATGTTAAAATGCTACTTCCTTCATGTGT GCTTAGCTGCAATGACCTGTGTACAATTTAATAAGCAGCTAAATTGGTTCTAGAAATTGGTTACTAATTTGTTTAAATAT GATACTAAAGCTTCTGGAACTTTATTGTTTGCTTGACACAAATTATTCTGCCAGTTAGCTATGCTGACATTTGTTGTACA TTCTGTTTCTTTATTGATATTATCTGCCAACATCACAGGGTGCATCTTTTGAGGCTGAAAGGGTATTCTTGGCTGCAATT GATAAGTTTGATGCTATGCTGGTGAAAGGCAAAGTTTATGCACCGGATGGTATTATTTCTTATTCCTGAACTTATCATTT ATAATCTTAGATACAAGTGCGACTTGAGAATATTATGCTGACTGGTTCTCACTAAAGTACATGGCCTTCTATGGATTGTT AGAATTTAAGATCATAAACCACATACCTGGCTCAAAATAACTGTATAAAAGGTGTCTTTGCATTGTAACAAAAAAAAAGG TGTCTTTGCATGAAGAACTGTATTAAGAATAGGGATTTTGGTCTTTGTAATGTCCATAATCATCTTATCATAGCACACAA TCTTTACACTAAGTTGCAACTTAGCTATGTTTGATAGGATCATGCTCATGGAGAATTTTAGCATAGAAAATATTATCTCT TGGGTGTCAGAATGCTTCTTCTTCAGCATCTTGCCATTTCTGTTTTCATATATCCTTTCTATGATGAGATCCAAAGTCCT ACTTCTACTGCTATGTTTAACTTGGATTTTAACATGTCGGGTTGCAGCACTGTTCAGATGGGGTATGACATTGCAGCAAA GATCTCGCTTAAGGCCAGGAAGTAGTAAAGAGAAGGTGAAGTTACTGCAACAGGCTAAAAGGCTATATGAAGATGCGCTT GATATGGACTCTAATAACATTCAAGTGAAAGATGCCTTATCCTCGTGTGTCTCTGAACTTAACTATCGACGATATTAGTC TATTCATGGAAAGTGTTATCCAGAAGAATCAGTTTGCTTTCAATTCCAGCTACTATGGTATATCTGCTCTGGATCCAGCA CCTGCAGGAGAATGAGTTGTGAATCCCAGTTTCTTCGTCTTCTTCCTGAATCTTCATAGAATTAGACAAAGACAGAAATA ATAATACATGTAACAACAGTAATAATAAATGTCAAAGGAAACCATTTTTGTTGTCTTTTCTCTATCCTAGAATTCTTATC AGTGTCAATGTTGTACCAATAGCATGAATTCCCACTATCAATGTAAGAAATAATTATCAACGTTAAATATATTTTTAGAT CATCTAATATCAGAGAGTTTTGATTTTAGCCCCTA
CDS sequence (LotjaGi4g1v0267900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACTTCGTGATTTCAAAGAATCCTGTTAATCTTCTCAACTATCACTCACCGTGTTCGCTTCTTCGTTTCCATGTTCC TTCGCTTCTTCGCAGTTCAACCACGAAATGGACACGTGGCTCTGAAACTCTCAGGTTGAGAGCTTCGTGTGCTTCTTCTA CCTCAGCTGGTTGCTATGGAGGCTGGGATGATCTTAGCGGCTCAGAAGCTCCAGGTGAGTTCGATACGTTGCGCGATTTT CTTGTTTCAATCGGAATCGATGATAGGAAGCACGTTTTCGTGTTTTTATTGGGCCTTGTTTGTGCGATGGCGATTTCTAG AGTTAAGGTTTCTACTTTCCTTGTTCTTCCTGCTTCCGTGTTGCTTTTAGCTGTTGGATTTGCAGCAGGGTCTTTTCAGA ATGGAACCTTTGGTGAAGTGAGGGTGAGTGGAAGTAAGAAGAGGGAAAAGGAAAAGGAGGAGAATTTGAAATTGCCCTTT GAGAAATTGAGGAGCGTGGATGAATTTTTTGATGAGATTGATCTTGTGATTGGTAACTTGAAGAGTGATGTTCAAAGTGC TATCAGGAATAAGAAGATTCAAGTGGATGATTTGTGTGGTTATGTTGAAGTCACTGATAGGATAAAATTGTCTGCTTTGA ATGCTAGGAACATTGTTAAGACTTTAATCGACGATGAGGAGAAGGCTAACGGCGCGTTGGTTGAGAACCATAAGAGCGGT AGAAGGAAGAAACAAGTTGGAGAAGCTGGGTATCAGATGTTAAAATCTATTAGTAGTTTGTTTGGGGATGATTTGCGAAG CTCCAATTCCACCAAAGTCAGGGAAAATGTGGACAGAGAATTGGATCAAACTAAAGGAAATGGTGGTGTGCCGCCAGTTG AAGATAGGACTTTAAATTTGGTTGATGATAGTAAAGCAAATGGCAAGTTGGGTTCTTCTCAAGACTTGGTTACTGATTCT GTTTTGGGTATGGGCAGATATGGAAGAATGAAAAACAATCCTGAGATAGAAAGTTTTGACTTGGGGGACAATCGCAGAAG CACTAACAAGTTCCCTGGTGAAAATAAGTATAGTTACCCGAACAAAGGATTGAGGTTCACAAATAATCACAGCTTCTCTT TGAAGATGGATTCGAGCAGCACGACTGATATGTGGGAATCCCGCGACAATGTGCTTGATTCTGAAGGCTTTAAAGTCAGA ATGAAACACATGGAAAGCGAGTCTTCCTATATGCGCAAGGAGTTGCTTGATCAAAGCCATGAAACTTTCAGGTCTTCTCA CGACAAGAGGGAGAGTATGTCTGATAGATCTCGGTATGCACAGGATAGGGTGGATTATGGTGACCATCGCCATCTTGCCA ATGACTTGTCTGAAGGTGAGAATGAATTCAATTCCCCTTCATCTGCAAAAGTCTCAGATGATGTGATGTTTGATAGGTAT CTTGCTGAAGCAACAGACCTTCTAAAAGAAGCAAAAGAGTTTGTTAAGGGTAGACATGATGAAAAGCAAGCTGAAATCCT GTTATACAGGTCTGCAAACTTACTATCCAAAGCTGTGGACTTGAAACCAATGAGTTTATTGGCTGTGGGACAGTTAGGGA ACACTTATCTTCTTCATGGAGAATTGAAGTTGAAGATTAGCCGTGAATTGAGAACTCTTCTTTCAGGAAGAATCCAACCA TCATCTAGAAAGCATAGAAGAATATTGAATGAACTGCAAACTAATATTACCAGTGAAGAAGAAGTTACACAATTGCTTAT TGATGTGTGTGAAGAGTGTGAAGAGCTACTGGTTGAGGCAGGTAGAAAGTATAGGTTGGCGTTGTCAATTGATGCAAATG ATGTGAGAGCCCTCTATAACTGGGGCCTTGCTCTCTCTTTCCGTGGCCAATTGATATCGGATATTGGGCCGGGTGCATCT TTTGAGGCTGAAAGGGTATTCTTGGCTGCAATTGATAAGTTTGATGCTATGCTGGTGAAAGGCAAAGTTTATGCACCGGA TGCACTGTTCAGATGGGGTATGACATTGCAGCAAAGATCTCGCTTAAGGCCAGGAAGTAGTAAAGAGAAGGTGAAGTTAC TGCAACAGGCTAAAAGGCTATATGAAGATGCGCTTGATATGGACTCTAATAACATTCAAGTGAAAGATGCCTTATCCTCG TGTGTCTCTGAACTTAACTATCGACGATATTAG
Protein sequence (LotjaGi4g1v0267900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNFVISKNPVNLLNYHSPCSLLRFHVPSLLRSSTTKWTRGSETLRLRASCASSTSAGCYGGWDDLSGSEAPGEFDTLRDF LVSIGIDDRKHVFVFLLGLVCAMAISRVKVSTFLVLPASVLLLAVGFAAGSFQNGTFGEVRVSGSKKREKEKEENLKLPF EKLRSVDEFFDEIDLVIGNLKSDVQSAIRNKKIQVDDLCGYVEVTDRIKLSALNARNIVKTLIDDEEKANGALVENHKSG RRKKQVGEAGYQMLKSISSLFGDDLRSSNSTKVRENVDRELDQTKGNGGVPPVEDRTLNLVDDSKANGKLGSSQDLVTDS VLGMGRYGRMKNNPEIESFDLGDNRRSTNKFPGENKYSYPNKGLRFTNNHSFSLKMDSSSTTDMWESRDNVLDSEGFKVR MKHMESESSYMRKELLDQSHETFRSSHDKRESMSDRSRYAQDRVDYGDHRHLANDLSEGENEFNSPSSAKVSDDVMFDRY LAEATDLLKEAKEFVKGRHDEKQAEILLYRSANLLSKAVDLKPMSLLAVGQLGNTYLLHGELKLKISRELRTLLSGRIQP SSRKHRRILNELQTNITSEEEVTQLLIDVCEECEELLVEAGRKYRLALSIDANDVRALYNWGLALSFRGQLISDIGPGAS FEAERVFLAAIDKFDAMLVKGKVYAPDALFRWGMTLQQRSRLRPGSSKEKVKLLQQAKRLYEDALDMDSNNIQVKDALSS CVSELNYRRY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 91 | 91 | - | – | |
| PANTHER | 3 | 728 | 726 | 4.2E-251 | – | |
| Phobius | 92 | 108 | 17 | - | – | |
| Phobius | 109 | 113 | 5 | - | – | |
| TMHMM | 110 | 132 | 23 | - | – | |
| Phobius | 114 | 132 | 19 | - | – | |
| Phobius | 133 | 730 | 598 | - | – | |
| MobiDBLite | 333 | 362 | 30 | - | – | |
| MobiDBLite | 336 | 350 | 15 | - | – | |
| MobiDBLite | 420 | 444 | 25 | - | – | |
| SUPERFAMILY | 512 | 724 | 213 | 8.54E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0267900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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