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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0269700 |
| Transcript ID | LotjaGi4g1v0269700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box/kelch-repeat protein; TAIR: AT1G55270.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q93W93|FBK22_ARATH F-box/kelch-repeat protein At1g55270; TrEMBL-Plants: tr|I1K1K1|I1K1K1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0269700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:63500407..63504713) extracted from Lotus japonicus Gifu genome v1.2.
TTTGTCTGTCACTATTCTTCCTTGGGTTATGTTACCCTTTTGCAATGTTCAACTCAGTTGAGTAGCTGTTGCATGGGAGT TTTGACTTTCCCATTCCAAAACCCCTCCAAACAAAACAAAAGCTATCTTCCAAACCCAACTTGTCAAATGTCTCCCTTTT TTCTCCAATCTCCCATTTGCAACCACCAAGGTGTCATGTCATGTCATCATTTCTTCTCTCCTCTTTTCATGGTTTTGCTT TGATTTGCTTTTTCTCAATTTTCTACTACTAATTCTCATTTCTCTCTCTTTTTACCCTCCCTTCTTCTACTACTAGTTCT CTTGTTGAACACACTCTTGTGCTTGGTAGGTGATGGGCCCTAAACAGAAACTCCACTGAACTTTGATGGGAAGAACAACC AAAGTTCTCTCTTTTACCTCTTTCTGTGCTACCCCTTTGCCCCAATTTCCCTCTGTCTCACAATTTAGGTTTTTGCCCTC TTTTTACTCCAAAGATAAGATTTTTAGGGAATTTGATTTGACTTTGATTCTTGGCAATTTTCCATTTGGAGTTTATTGTA TTCCTTCCACATGGGGTGTCATTGAATGATCGTGTTGTTTCACTGGCTTGCATAGTTCAAATCTCCTTCTCAAATCCCAA TTTTGTAGTGAGTCAAAGTGAATTTGAAGAAGAAGAAAAAAGGGGTTTTAGGACTAGATTCTCTCGAATTTCGTGATGGG GATGAAGTTTGAGCTATGAAGACTTGATTTGTGAGGTTCAAGTCCAGGGAGTCATCTTTGGAGCCCAGGAAGATGGACAG AGTTATTCAACCTCCTTTGGTAATTTGCTTTTTGAGCTTTTTTTATCCTGTTTTTCTTCACTATTTTGCATGCCACTTCA TGTTTTGTTCATAGCTGAATTGGTTTGACTTGCTTCTTTTGTATGGTCTTTTCTTTGGAAAGGATGGGAACTCTAATGTT TGGACCATTGGAGTTTGGTATTCATGTATCCAAGTCACTGGTGTAATTGTTGAATTTTACTTGCTCTAATATGCTGCTTG AATGAGCTTCAAAAGTTTTTTTTATCTAATTAAGAGCTTCAATATAGACTTTTTGTTAATGAGGTTGTAGAAATGAAGGG GAAACTTTAGGGGTCGATGCTCGAAGATTCTGGATGTTGTAAGGAGATGAGATTTTGTTCTGTTGATTGCCATTACTCGC TTAACGTTTATTATGTTACCCTTCTAAGTTATATCTTTGGCATTTGAGCCTCCCTGAAATATTGGTCAAATACTACTCTC TGTGTCAGTTTCTTTGAATCACTGAGAAATGAATACAAGTATGTGTTATAATTGGAGTGTTTAGATAGGGATAATATTTA GCATAACCCCCTGACAATTTTCAGTAATCCGAGATCACTTGCTAAAAAACAAGTGTGGTTTTCATCCTGAATTTTTGAGA CTGTTGGACATGAAACTAATGGATTAAGTTGCCTTCTAACATGTACCAGTCATTTCTGAGGCTTGAGATTTGAGTAATGT GACATATTGCTATGGACTTGATGTGGGTCTCATTACATTAGACCTGCATTTTCCTTATTAAATTATTATTTGCATGCACC AGCTCATGCAGTTCATTTTTCACAAAAATGTCATAAAGCTGATTGTAGAATTTATTTCCTATATTGTAAAAGATAAGGTG ATATGTATATATGACTTAATCTGAACCTGAAAGATTGCCCTCATATTAATTGTATGTTCAATCTATTAGTAAATAAGATG CTATATCTGCTGCTTCTGGAGTATTGTATACACAAGAAGCTGAGACATTTATGTTGTCTCATGTTTGAGTTCGCAAATCA TAGCTTCACGTACTAAAAAAAAGATTGTGCTTTCATTTTTATTAAGAAAATAGCTAAACAATTTTCTGTTGGAAATGTGT TTGCAGGTTGATACGACTGCATGTTTATGCAGAGTAGATACAGGCCTGAAAACTGTTGCTGGGGCAAGGAGGTATGTCCC TGGAACAAAGCTTTGTCTTCGGCCTGACATTAAACCGTCCATTCACCCAACTAGAAGCAAGCCGGCACGCGGTGACCGAA GCCGCAATCAATCCCCTCTACTTCCTGGACTCCCTGATGATCTTGCTATTGCTTGCCTAATTCGAGTCCCACGGGTTGAT CACCGTAAACTTCGGCTAGTCTGCAAAAGATGGTATCGTCTTTTGGTTGGTAACTTCTTTTATTCTCTCCGCAAGAGTCT TGGAATTTCAGAAGAGTGGATATATGTCATTAAGAGAGACCGAGATGGGAAAATCTCGTGGCATGCTTTTGATCCTGTGT ACCAATTATGGCAGCCCCTGCCTCCTGTTCCTAAGGAATATTCTGGAGCTCTTGGTTTTGGCTGTGCTGTTCTCAATGGG TGCCACCTCTACCTGTTTGGCGGGAAGGACCCACTAAAGGGATCCATGAGACGTGTCATCTTTTATAGTGCTAGGACAAA TAAATGGCACCGTGCCCCAGATATGCTTCGTAGGCGACACTTCTTTGGCTCCTGCGTCATAAACAATTGTCTGTATGTGG CTGGTGGGGAGAATGAGGGGGTGCACCGATCCTTAAGATCAGCTGAAGTGTATGATCCCAACAAGAACCGATGGTCATTT ATTTCAGATATGAGCACTGCAATGGTCCCTTTCATAGGAGTTGTCTATGACGGGAAATGGTTCCTGAAGGGACTTGGTTC TCATCGGCAGGTTCTGAGTGAGGTCTACCAGCCAGAGAATGATAGCTGGTACCCTGTTTATGATGGAATGGTTTCTGGCT GGAGGAACCCTAGCACTACCCTAAATGGACAGCTCTATGCCTTAGACTGCAAGGATGGCTGCAAACTTAGAGTTTATGAT GAGGGTAGTGATTCATGGAGCAAGCATATTGACAGTAAAATGCATTTGGGGAACTCGCGGGCCTTGGAGGCTGCTGCTCT TGTCCCTCTCAATGGAAAACTATGTATCATCCGGAATAATATGAGCATTTCCCTGGTTGATGTCTCAAAAATAGAAGATT TGAAAGGATCTTCTGCTGAACAGTTATGGGAAACGATTGCCGGTAAAGGACAGTTCAAGACCTTGGTCACCAATCTTTGG TCTAGTCTCGCCGGGAGAAACCGACTCAAAAGTCACATAGTTCACTGTCAGGTTCTTCAAGCTTAGAGGTTGTACAGTGC TAAAAAATCAACCAAGGTTGAGTTTGTTCATGTGTTACAGCATCTCATCTTGGTTTTATATGTCTGTGACAAAGTGGGCC AAATCTTGCAGAAACAACATGGTGGATTCTGTTGTTGCATTTCATCTCAATTTCTTGGGATAATGCTCATCACAAGAGGT GATATACATAGATGAGATGGTTTATTATCCATATAGTGCTCTACATATATTGATACAAAGCTGTTACATTTTGAAAATTG AGTAGGCTGTTTACTATCATTAGCTTGTGCTTTGTATTGCTGCCACCAATGTGTACCAGGATGATAGTTTGGATGGGGGA GAATAATAACTAAGTCAGTTTGGTTTTCTTATAAATCTGAGGGTGAAAAATTCAAGAGTTAGTTTTGAACATAATTTTTC AATATAAAACTTATCTATGAATTTTTCACCCTCATTTTCTGTTGTAACATCCAACTGACCTCAACTCTTAACATGTACAA CTCTTGCATTGCATTTTCATGTACATGTACATGTACAAGTGGTATCGAGATTACTGGTGAAAAAGGTGGTGGGGTTGCCC TTGAAGTTTTGTACTATGATCAAACACTATATATAGACTATTTGGATTATTTCTGTGCCTCTCAAACTGTGTCTGCAACT TTTGTTTGTGTAAACTAATAAAATCAATTACTTTTTCGTTGGATCAAACAATAATTTTATGTGAACTATAATCTAAACAT GATGTTGCATTGCCAAAGTGAGAAACCATTGCATTAACCATCAACTCATGGCTTGTTAGAAAAGAGAATTTAAGGGGAGG GGTGGAGTGCATGTTTTCCTTCTATAATTGATTCTGAAGCCAGAATCAATTATTTGGAGAAGCTTCTGATTGCAGCTTCT GGATTTCAAAGTTGACTCATGAACGAAAAACATACATAAACATCAACTCAGCTGGTGTGATCATTAGACTTTTTTGTTAA ATGAACATTTGACTTTTTGTGATGCCACAACTGTGAGGTTAGGTACATAATACTTCAGCTGAATTTGTTTTGATTGGAGT ATTATCAAGAGAGGATTTTATATCTTATTACGTACTTTTTAATTATGATTAGGTTTTTGGGCACTCT
CDS sequence (LotjaGi4g1v0269700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACAGAGTTATTCAACCTCCTTTGGTTGATACGACTGCATGTTTATGCAGAGTAGATACAGGCCTGAAAACTGTTGC TGGGGCAAGGAGGTATGTCCCTGGAACAAAGCTTTGTCTTCGGCCTGACATTAAACCGTCCATTCACCCAACTAGAAGCA AGCCGGCACGCGGTGACCGAAGCCGCAATCAATCCCCTCTACTTCCTGGACTCCCTGATGATCTTGCTATTGCTTGCCTA ATTCGAGTCCCACGGGTTGATCACCGTAAACTTCGGCTAGTCTGCAAAAGATGGTATCGTCTTTTGGTTGGTAACTTCTT TTATTCTCTCCGCAAGAGTCTTGGAATTTCAGAAGAGTGGATATATGTCATTAAGAGAGACCGAGATGGGAAAATCTCGT GGCATGCTTTTGATCCTGTGTACCAATTATGGCAGCCCCTGCCTCCTGTTCCTAAGGAATATTCTGGAGCTCTTGGTTTT GGCTGTGCTGTTCTCAATGGGTGCCACCTCTACCTGTTTGGCGGGAAGGACCCACTAAAGGGATCCATGAGACGTGTCAT CTTTTATAGTGCTAGGACAAATAAATGGCACCGTGCCCCAGATATGCTTCGTAGGCGACACTTCTTTGGCTCCTGCGTCA TAAACAATTGTCTGTATGTGGCTGGTGGGGAGAATGAGGGGGTGCACCGATCCTTAAGATCAGCTGAAGTGTATGATCCC AACAAGAACCGATGGTCATTTATTTCAGATATGAGCACTGCAATGGTCCCTTTCATAGGAGTTGTCTATGACGGGAAATG GTTCCTGAAGGGACTTGGTTCTCATCGGCAGGTTCTGAGTGAGGTCTACCAGCCAGAGAATGATAGCTGGTACCCTGTTT ATGATGGAATGGTTTCTGGCTGGAGGAACCCTAGCACTACCCTAAATGGACAGCTCTATGCCTTAGACTGCAAGGATGGC TGCAAACTTAGAGTTTATGATGAGGGTAGTGATTCATGGAGCAAGCATATTGACAGTAAAATGCATTTGGGGAACTCGCG GGCCTTGGAGGCTGCTGCTCTTGTCCCTCTCAATGGAAAACTATGTATCATCCGGAATAATATGAGCATTTCCCTGGTTG ATGTCTCAAAAATAGAAGATTTGAAAGGATCTTCTGCTGAACAGTTATGGGAAACGATTGCCGGTAAAGGACAGTTCAAG ACCTTGGTCACCAATCTTTGGTCTAGTCTCGCCGGGAGAAACCGACTCAAAAGTCACATAGTTCACTGTCAGGTTCTTCA AGCTTAG
Protein sequence (LotjaGi4g1v0269700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDRVIQPPLVDTTACLCRVDTGLKTVAGARRYVPGTKLCLRPDIKPSIHPTRSKPARGDRSRNQSPLLPGLPDDLAIACL IRVPRVDHRKLRLVCKRWYRLLVGNFFYSLRKSLGISEEWIYVIKRDRDGKISWHAFDPVYQLWQPLPPVPKEYSGALGF GCAVLNGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFGSCVINNCLYVAGGENEGVHRSLRSAEVYDP NKNRWSFISDMSTAMVPFIGVVYDGKWFLKGLGSHRQVLSEVYQPENDSWYPVYDGMVSGWRNPSTTLNGQLYALDCKDG CKLRVYDEGSDSWSKHIDSKMHLGNSRALEAAALVPLNGKLCIIRNNMSISLVDVSKIEDLKGSSAEQLWETIAGKGQFK TLVTNLWSSLAGRNRLKSHIVHCQVLQA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 428 | 428 | 9.5E-292 | – | |
| PANTHER | 1 | 428 | 428 | 9.5E-292 | – | |
| MobiDBLite | 44 | 67 | 24 | - | – | |
| SUPERFAMILY | 52 | 108 | 57 | 7.03E-7 | ||
| Pfam | 68 | 103 | 36 | 5.7E-6 | ||
| Gene3D | 116 | 393 | 278 | 4.1E-40 | ||
| SUPERFAMILY | 121 | 367 | 247 | 1.44E-46 | ||
| Pfam | 159 | 202 | 44 | 2.2E-4 | ||
| SMART | 169 | 216 | 48 | 3.9E-7 | ||
| Pfam | 205 | 252 | 48 | 2.2E-14 | ||
| SMART | 217 | 265 | 49 | 2.8E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0269700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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