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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0269800 |
| Transcript ID | LotjaGi4g1v0269800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP dependent RNA helicase; TAIR: AT3G58570.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q9M2F9|RH52_ARATH DEAD-box ATP-dependent RNA helicase 52; TrEMBL-Plants: tr|A0A0R4J5P6|A0A0R4J5P6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0269800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:63510466..63513615) extracted from Lotus japonicus Gifu genome v1.2.
GATACATGCTCAAATCAAAACTACACACACACTATTACTATAGCACTCTCTGTTGTGTTCCTGTCGTTTTCTTCAACAAA CCGTTTTCTCTACTCAAATCAAAAACTATACAAATCACCAACAATGGCATGGCCTGATCCTTCTTCCACCCCCTTCACTC GCAAACCAACTCGTCCCCCTTACATTCCTCCTCACCGCGCCAACGACGCCGTTTTCCCTCCTCCTCCTCCGAACACCGAT CCTTCCTCCTTCCATTTCTCCAACCCCAACCACTACGCCTCCCCCCGCCCCCGCGGCCGTGGCCGCGGCGGCCACTTCAA TGGTCGCCAGTTCCCCCGTTCCGATGACCACCCTCCTCGCCACCATCACAACCCACCACCACCACAACAACGGTTCCCGG TCGAAGTGGACAACAACATCAACAGCAACAGCAACCCCGCCGGCGACGTCGCGAATTTCGATGCGTACGAATCGGTCCCC GTCGAGGCCAGCGGCGAGAATGTGCCTTCTCCGGTTGGTTCGTTCGCGGAAACTGAACTCGATGAGGATTTGAAGAGGAA TATCGAGCGATGCAAGTACGTGAAGCCCACGCCGGTTCAGCGTCACGCTATACCCATTGTCGCCGCCGGACGCGACCTCA TGGCCTGCGCGCAAACCGGGTCTGGTAAAACGGCAGCGTTTTGCTTCCCCATTATATCTGGGGTTTTGAAGGCTCGTTCT GGTTCTGGTTCTGGTTCTGGGTTTTCTTCCATTCCTCGTTCTGATGCCTTCGTTGCATACCCAACTGCTCTCATTCTATC TCCTACTAGGGAGTTATCTTGTCAGGTTTTTCCTTTACCATTTTTGCTCTGTTGAGTTTTCTTCATTTTTAGATCAAAAC TTGCTTAAATCTCTGTTTGGTTTAATGCTAGATACATGCTGAAGCAACCAAGTTTGCTCATCAAACTGGAGTGAAGATTG TGGTTGCTTATGGGGGTGCTTCCATTGTTAAGCAGGTTTGTGTTTCATTTTGAGGCTTGTTTTCTGGTTGTACTAGTGTT GATTGCAATTTTCATTGTTTGATGACTGAAAACAGCTTCAAAATTTGGAGAAAGGTGTTGATATCTTGGTTGCTACACCT GGACGCTTGGTGGATATTATTGAGAGAGAAAGGGTTTCATTATCGAAGATTAAGTACCTTGCTTTGGATGAAGCTGATCG CATGTTGGACATGGGTTTTGAGCAGCAAATACGCAAGATTGTGCAGCAGATGCACATGCCTCCTCCAGGTGTTAGACAAA CAATGCTTTTCAGTGCTACATTCCCCACTGATATACAGGTGAAGTTGTCTTTTGTGACGATGTTCTTCTATATGCTTTAA TGGTTGTTTGGTTGTGTTTAGACTCTTTCAGTTGGTTCATGAATTGTATCATGTTGCAGAAGCTGGCTGCGGATTTTCTG TCAAACTACATATTCCTGGCTGTTGGAAGGGTTGGTTCGAGCACTGAACTTATTGTACAAAAAATTGAACTTGTACAAGA TACAGACAAACGAAACCATCTTGCTAACCTTCTGTGTCGTCAAAGGGCAAATGTAGACCATGGGAAGGTAATGATTGTGT TTTTTGTTAAATGGGGGATGCTTTTAGTTGCTATTTTTATTATGTTAGCTCCAGTTTCAGCTTGTTTGTTAAGTATTGTG TGTTCAGGAACTGATTTATTTTAACTGTTCTCTGCAATGCAGCAAGCCCTAACTCTTATCTTTGTTGAAACAAAGAAAGG AGCTGATGCTTTAGAAATTTGGTTGTCCAGAAATGGGTTTCCAGCTATTGCAATACATGGTGATAAAGTTCAAATGGTTA GTGTCTTCTGGATCCATTGCTTCCTTTTTTCACCTAGTGTACTTAATGGGAATCCTCTGTTTGTGCTATATTGCATTGGC TACTATTGCAGTAAATTTGGCTTTATTTTGTAGAGATTCTTTGATCTCATGCATGCAAATGATGATTGCAACATTTGATT ATGTGTTACTTAGAATAGTTGTCAGGGTATGAAATTATTCAATGATTGTACCATTAAGCTCTCCTCTAATATTGTTTTGC CATTTTTGTCATATTATTGTAATTTGATAAAGTAATATCTTGCTACATTGTATATGTAGGAGCGGGAGCGAGCTTTAAGA TCTTTCAAACGTGGTTTCACTCCCATTTTGGTAGCAACTGATGTTGCTTCCCGGGGTTTAGATATACCACATGTGGCTCA TGTTATCAACTATGATTTGCCTAGAGACATAGCTGACTATGTACATAGGATTGGTAGAACAGGCCGTGCTGGTAAATCTG GACTAGCCACTGCTTTTTTCAGCAGCAACAAGAACCCTCCTATTGCAAAGGCTCTTGTTGAAATTTTGCAGGAAGCAAAG CAGGAAGTTCCGGCTTGGCTCGGTCAATTTGCCGAGGGCTCATCATCTGGTGATCGTGATCATGGACCTCCGAGGCGAGG CAGAGGCAATTTCGGTGGTCGTGATTTCCGTAATGTCACTCAACCTGCTGTGGAGAATTACAACAACTACTATAATACTT ATGGCAATGCTGACCATTATGTGGAGCCTTATGTCACTCAGCCTGATACAGTTTATGCGAGCAATAATCATTATGATACC TCTTATGACTACAACAACACAAACATCCCTAATTCTGTTTATGCAAGCAGTAATCATCATTATACTGATCCTAATGCTGA GTTTTGTGGAGCTGGGAGGGTTGAAAATGGGCCTTGGGGTCATGCATCTGTTGTTGCTACTGGATGGGACTAGATTGATA GTAGATGGCTCATTGCTTCTTTTTGTTATAGGGGTACGGCACCTTGTATATTCTATATATACAGTGATGCTGAGGTGCAA GTTGAGGTAGTTTAACCCTGTATATCCTTTAAACTAATTAGCTGCTTTTTTGGGGATGCATCATCTGGATCTAAGGATAC ATTGATTTACCAGAACCTAAATGTATCCTATATTTTGTTTTGCTAGAACCTGTTAGCTTTTTGGGGATGCATCATCTGGA TCTAAGGATTAAGGATACATTTATCAGTATTTTCCTTATTATTATTTTGTGACTTTAATTCTCACCATTGATATTAAAGT TTTATTTATAACCAACTCTGTTTGACTGGC
CDS sequence (LotjaGi4g1v0269800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATGGCCTGATCCTTCTTCCACCCCCTTCACTCGCAAACCAACTCGTCCCCCTTACATTCCTCCTCACCGCGCCAA CGACGCCGTTTTCCCTCCTCCTCCTCCGAACACCGATCCTTCCTCCTTCCATTTCTCCAACCCCAACCACTACGCCTCCC CCCGCCCCCGCGGCCGTGGCCGCGGCGGCCACTTCAATGGTCGCCAGTTCCCCCGTTCCGATGACCACCCTCCTCGCCAC CATCACAACCCACCACCACCACAACAACGGTTCCCGGTCGAAGTGGACAACAACATCAACAGCAACAGCAACCCCGCCGG CGACGTCGCGAATTTCGATGCGTACGAATCGGTCCCCGTCGAGGCCAGCGGCGAGAATGTGCCTTCTCCGGTTGGTTCGT TCGCGGAAACTGAACTCGATGAGGATTTGAAGAGGAATATCGAGCGATGCAAGTACGTGAAGCCCACGCCGGTTCAGCGT CACGCTATACCCATTGTCGCCGCCGGACGCGACCTCATGGCCTGCGCGCAAACCGGGTCTGGTAAAACGGCAGCGTTTTG CTTCCCCATTATATCTGGGGTTTTGAAGGCTCGTTCTGGTTCTGGTTCTGGTTCTGGGTTTTCTTCCATTCCTCGTTCTG ATGCCTTCGTTGCATACCCAACTGCTCTCATTCTATCTCCTACTAGGGAGTTATCTTGTCAGATACATGCTGAAGCAACC AAGTTTGCTCATCAAACTGGAGTGAAGATTGTGGTTGCTTATGGGGGTGCTTCCATTGTTAAGCAGCTTCAAAATTTGGA GAAAGGTGTTGATATCTTGGTTGCTACACCTGGACGCTTGGTGGATATTATTGAGAGAGAAAGGGTTTCATTATCGAAGA TTAAGTACCTTGCTTTGGATGAAGCTGATCGCATGTTGGACATGGGTTTTGAGCAGCAAATACGCAAGATTGTGCAGCAG ATGCACATGCCTCCTCCAGGTGTTAGACAAACAATGCTTTTCAGTGCTACATTCCCCACTGATATACAGAAGCTGGCTGC GGATTTTCTGTCAAACTACATATTCCTGGCTGTTGGAAGGGTTGGTTCGAGCACTGAACTTATTGTACAAAAAATTGAAC TTGTACAAGATACAGACAAACGAAACCATCTTGCTAACCTTCTGTGTCGTCAAAGGGCAAATGTAGACCATGGGAAGCAA GCCCTAACTCTTATCTTTGTTGAAACAAAGAAAGGAGCTGATGCTTTAGAAATTTGGTTGTCCAGAAATGGGTTTCCAGC TATTGCAATACATGGTGATAAAGTTCAAATGGAGCGGGAGCGAGCTTTAAGATCTTTCAAACGTGGTTTCACTCCCATTT TGGTAGCAACTGATGTTGCTTCCCGGGGTTTAGATATACCACATGTGGCTCATGTTATCAACTATGATTTGCCTAGAGAC ATAGCTGACTATGTACATAGGATTGGTAGAACAGGCCGTGCTGGTAAATCTGGACTAGCCACTGCTTTTTTCAGCAGCAA CAAGAACCCTCCTATTGCAAAGGCTCTTGTTGAAATTTTGCAGGAAGCAAAGCAGGAAGTTCCGGCTTGGCTCGGTCAAT TTGCCGAGGGCTCATCATCTGGTGATCGTGATCATGGACCTCCGAGGCGAGGCAGAGGCAATTTCGGTGGTCGTGATTTC CGTAATGTCACTCAACCTGCTGTGGAGAATTACAACAACTACTATAATACTTATGGCAATGCTGACCATTATGTGGAGCC TTATGTCACTCAGCCTGATACAGTTTATGCGAGCAATAATCATTATGATACCTCTTATGACTACAACAACACAAACATCC CTAATTCTGTTTATGCAAGCAGTAATCATCATTATACTGATCCTAATGCTGAGTTTTGTGGAGCTGGGAGGGTTGAAAAT GGGCCTTGGGGTCATGCATCTGTTGTTGCTACTGGATGGGACTAG
Protein sequence (LotjaGi4g1v0269800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAWPDPSSTPFTRKPTRPPYIPPHRANDAVFPPPPPNTDPSSFHFSNPNHYASPRPRGRGRGGHFNGRQFPRSDDHPPRH HHNPPPPQQRFPVEVDNNINSNSNPAGDVANFDAYESVPVEASGENVPSPVGSFAETELDEDLKRNIERCKYVKPTPVQR HAIPIVAAGRDLMACAQTGSGKTAAFCFPIISGVLKARSGSGSGSGFSSIPRSDAFVAYPTALILSPTRELSCQIHAEAT KFAHQTGVKIVVAYGGASIVKQLQNLEKGVDILVATPGRLVDIIERERVSLSKIKYLALDEADRMLDMGFEQQIRKIVQQ MHMPPPGVRQTMLFSATFPTDIQKLAADFLSNYIFLAVGRVGSSTELIVQKIELVQDTDKRNHLANLLCRQRANVDHGKQ ALTLIFVETKKGADALEIWLSRNGFPAIAIHGDKVQMERERALRSFKRGFTPILVATDVASRGLDIPHVAHVINYDLPRD IADYVHRIGRTGRAGKSGLATAFFSSNKNPPIAKALVEILQEAKQEVPAWLGQFAEGSSSGDRDHGPPRRGRGNFGGRDF RNVTQPAVENYNNYYNTYGNADHYVEPYVTQPDTVYASNNHYDTSYDYNNTNIPNSVYASSNHHYTDPNAEFCGAGRVEN GPWGHASVVATGWD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 110 | 110 | - | – | |
| MobiDBLite | 11 | 41 | 31 | - | – | |
| MobiDBLite | 68 | 82 | 15 | - | – | |
| PANTHER | 91 | 594 | 504 | 6.4E-238 | – | |
| PANTHER | 91 | 594 | 504 | 6.4E-238 | – | |
| Gene3D | 92 | 358 | 267 | 9.1E-84 | – | |
| MobiDBLite | 93 | 108 | 16 | - | – | |
| ProSiteProfiles | 132 | 160 | 29 | 10.129 | ||
| CDD | 133 | 362 | 230 | 5.43568E-148 | – | |
| SMART | 151 | 371 | 221 | 2.0E-60 | ||
| Pfam | 156 | 345 | 190 | 2.6E-49 | ||
| ProSiteProfiles | 163 | 356 | 194 | 28.522 | ||
| SUPERFAMILY | 221 | 507 | 287 | 8.72E-72 | ||
| Gene3D | 359 | 538 | 180 | 1.2E-53 | – | |
| CDD | 368 | 504 | 137 | 1.47208E-57 | – | |
| Pfam | 380 | 495 | 116 | 7.9E-30 | ||
| ProSiteProfiles | 394 | 535 | 142 | 23.162 | ||
| SMART | 414 | 495 | 82 | 2.7E-35 | ||
| MobiDBLite | 534 | 560 | 27 | - | – | |
| MobiDBLite | 542 | 556 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi4g1v0269800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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