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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0270500 |
| Transcript ID | LotjaGi4g1v0270500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Family methyltransferase; TAIR: AT2G26680.1 FkbM family methyltransferase; Swiss-Prot: sp|D4GYG5|AGLP_HALVD Hexuronic acid methyltransferase AglP; TrEMBL-Plants: tr|G7JCY4|G7JCY4_MEDTR FkbM family methyltransferase; Found in the gene: LotjaGi4g1v0270500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:63607558..63609943) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCGAATGCCTGGAAAAGAGATAAACCCACAAGATTCCTCTCCCCAAAGTTTCTATTTTTACTCTTGACTTCCACTCT TCTCTTACTCATCTTCTTCTTCGTCTTCCTCACCCCAACCCCCTCAAACCCTAACCCTAGCTTCCTCACCATCAACACCC ACCTCTTCTCCACCGCAATTCCCCCTTTCGATTGCATGAAATCCCCTCAAGCCCACCCCGTCGTCGCCAGCGTCGTCGAA GGCGTTCGGTACCCGTTTCTCTTCTCGCTTTCCGATTTCGGAAACCTACCCGATAAGCCGCACAAGAACATCGTGAGGAT TCTCAAGGGGAAGCCATTTCGGAAGCCTGATATCTCGGTCACTGTTCAGGAGGTTCTGGAGAAGGCGAAGAGTGAGGGGA GAGATGGGTTTGTGGTGGATGTGGGTGCTAATGTGGGTATGGCGAGCTTCGCCGCGGCGGCTATGGGGTTTCGGGTTGTA GCGTTTGAACCTGTTTTTGAGAATTTGCAGAAGATTTGTGAAGGGATTTACTTTAATAGAGTTGCGGATTTGGTTACTCT CTTTGAGGCTGCTGCATCTGATCGTCTTGGTAACATTACTGTTCACAAGGTGAGATTTCTCTCTATTGTATCTGAGGTTT TGCGATGTTTGAATTGAATTTTGGTTGCTATAGTTTGTGGTGAGTTTGTTATTGAATTATAATGAGAGACTGTGGAAGAA GGGTTTGTTAGTGCTTCGTTGTATCGTTCGATACTAATCTAATTAACTCCGAAACGATTCCAGTTGATGGGGCAATAATG AACAGAACTGTAGATTTTTGTGAAGTATAAGTCTGGATAATGATGAATGGACATGTGAAAACTGAAAATGAAAACTGTTT TCCTCGAATTTTTTCAGTGTGTTTATCTGCCTCTACTGCTCCCTGGTGTGTCAGCCCAAACTTCTGGTTGGACATACCAT AGTTAAAGGATTATAAATCCAAAAATTTAAGGATGATCTTACATTTTAACTCTACTTTGAAGATTGACCATGAAATGCCA TATGTAAATATAAATAGTCAACTTCTCCTTGGAGTTGGTTCTAATTTTAGTATAGGAAACAAATAGTGCTGTTTCAATCT AGTCTCTTTCTTCAGTTTATGGTGGAATTATTTTGCCACTAGCTTCCTCAGGAGTCAGGAGCTATCTTTTGCATTATCCT GTTTCATTTACCCAATATAAAAGATGACAACCTTCCAATTTAAAGTTATGCTGAAGTATAAGGGAATTTTTCTTAATGAG CCGTTTAAGAAAACTTGATATGGTGTTAAGATTTATGTAAGATTTTGAAAGACTTGATATAGCTTAGGTGGTTGGGTTGG TATGGAGATTTAAATATGGTGTTAAGTTCAGGTGATGGTAGTAACTTCCTAATATGTCCTGCTCAAAAAATCCACAAAGT GCTGATTAAAATTGTTAGGGAAGGTTAGACCTGACAATTGCATTACAATATTTTGAACAAAGATCCGATGATCCATTATA ATACGTATTTAAAGAGTCTGCTGGTTTGTATTAGTTGGATAGGCTTGGATGAATGTAGTAAGTCTCAATATCTCTTGGGA AGTTGGGATAGCAGTGTGATCTTCAAAAGTTTAATATAGCGCCGACAGTTAATTTCTATTACATCTTAAACATAATGCAC ACAGGGGTGTACATTATGGTTGTAAGACTTGATTTTTGTTGAAACGTTACAACAAAAGTTTGTTTCTATTATTAATTTTG ATTATAATTGTGAAGTCTGTCTCCGTGGTCCCATATGGAAGTTTATGTTTTTGGAAATAAGATGATGAGGAAGTTTAGAA CATGAGGCCTTCAACTTTACGAGTTAGAGTTAGTAATCTTAAGCCAAGGCCCTATTGTTTCTGACATGAGAAGATAAAAC AACAAGAAAATGAAATCACATATTGTGCAATGCAACTTCTGCTTGTCTTTTGATTGCTGATCATGTCATTTTTCTTTTTC AAACTTTAATTTGCCAGTTGGTTGGTAGGCTGGACAACAGCGCGGTTTCTGCCACAGGTGCAAAGCTGGCATTTAAGTCC AATGAAGAGATCGCTTTTCAAGTAAGAACTGTTCCTCTTGACGAAGTGATTCCTGAATCAGAGCGTGTGCTACTGCTCAA AATAGATGTTCAGGGCTGGGAATATCATGTTCTTAAAGGAGCATCAAAGTTGCTCTCGAGGAAAGGAAGCCAAGCCCCTT ATCTCATATATGAAGAAGATGAGCGTTTGTTACAAGCCAGTAATAGCAGTGCAAAAGAGATTCGAGACTTCCTCCGGAGT GTGGGTTATCATGATTGCACCCAACATGGCACGGATGCACATTGCACCAAGAAGGATTGATCATAA
CDS sequence (LotjaGi4g1v0270500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAATGCCTGGAAAAGAGATAAACCCACAAGATTCCTCTCCCCAAAGTTTCTATTTTTACTCTTGACTTCCACTCT TCTCTTACTCATCTTCTTCTTCGTCTTCCTCACCCCAACCCCCTCAAACCCTAACCCTAGCTTCCTCACCATCAACACCC ACCTCTTCTCCACCGCAATTCCCCCTTTCGATTGCATGAAATCCCCTCAAGCCCACCCCGTCGTCGCCAGCGTCGTCGAA GGCGTTCGGTACCCGTTTCTCTTCTCGCTTTCCGATTTCGGAAACCTACCCGATAAGCCGCACAAGAACATCGTGAGGAT TCTCAAGGGGAAGCCATTTCGGAAGCCTGATATCTCGGTCACTGTTCAGGAGGTTCTGGAGAAGGCGAAGAGTGAGGGGA GAGATGGGTTTGTGGTGGATGTGGGTGCTAATGTGGGTATGGCGAGCTTCGCCGCGGCGGCTATGGGGTTTCGGGTTGTA GCGTTTGAACCTGTTTTTGAGAATTTGCAGAAGATTTGTGAAGGGATTTACTTTAATAGAGTTGCGGATTTGGTTACTCT CTTTGAGGCTGCTGCATCTGATCGTCTTGGTAACATTACTGTTCACAAGTTGGTTGGTAGGCTGGACAACAGCGCGGTTT CTGCCACAGGTGCAAAGCTGGCATTTAAGTCCAATGAAGAGATCGCTTTTCAAGTAAGAACTGTTCCTCTTGACGAAGTG ATTCCTGAATCAGAGCGTGTGCTACTGCTCAAAATAGATGTTCAGGGCTGGGAATATCATGTTCTTAAAGGAGCATCAAA GTTGCTCTCGAGGAAAGGAAGCCAAGCCCCTTATCTCATATATGAAGAAGATGAGCGTTTGTTACAAGCCAGTAATAGCA GTGCAAAAGAGATTCGAGACTTCCTCCGGAGTGTGGGTTATCATGATTGCACCCAACATGGCACGGATGCACATTGCACC AAGAAGGATTGA
Protein sequence (LotjaGi4g1v0270500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MANAWKRDKPTRFLSPKFLFLLLTSTLLLLIFFFVFLTPTPSNPNPSFLTINTHLFSTAIPPFDCMKSPQAHPVVASVVE GVRYPFLFSLSDFGNLPDKPHKNIVRILKGKPFRKPDISVTVQEVLEKAKSEGRDGFVVDVGANVGMASFAAAAMGFRVV AFEPVFENLQKICEGIYFNRVADLVTLFEAAASDRLGNITVHKLVGRLDNSAVSATGAKLAFKSNEEIAFQVRTVPLDEV IPESERVLLLKIDVQGWEYHVLKGASKLLSRKGSQAPYLIYEEDERLLQASNSSAKEIRDFLRSVGYHDCTQHGTDAHCT KKD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 42 | 42 | - | – | |
| Phobius | 1 | 17 | 17 | - | – | |
| TMHMM | 13 | 35 | 23 | - | – | |
| PANTHER | 15 | 321 | 307 | 4.0E-80 | – | |
| PANTHER | 15 | 321 | 307 | 4.0E-80 | – | |
| Phobius | 18 | 37 | 20 | - | – | |
| Phobius | 38 | 42 | 5 | - | – | |
| Phobius | 43 | 323 | 281 | - | – | |
| Gene3D | 126 | 318 | 193 | 2.8E-29 | – | |
| SUPERFAMILY | 131 | 316 | 186 | 2.22E-38 | ||
| TIGRFAM | 138 | 272 | 135 | 4.8E-31 | ||
| Pfam | 140 | 307 | 168 | 5.3E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0270500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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