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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0271800 |
| Transcript ID | LotjaGi4g1v0271800.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT2G25490.1 EIN3-binding F box protein 1; Swiss-Prot: sp|Q9SKK0|EBF1_ARATH EIN3-binding F-box protein 1; TrEMBL-Plants: tr|A0A1J7GHQ3|A0A1J7GHQ3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0271800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:63856122..63858252) extracted from Lotus japonicus Gifu genome v1.2.
AGAATCCTTAGATCATTAGGTTTGGATCTAGTATTAATAGTGATGTCTTTATAAGTTATGACCCTATAGTTTTTTTTCCC TTTTTCTACTGATTGGTGGAATGGACATGCATGATCAAGTCATATTTAGCTGAAAGTTTTAATCTTTTGTATGTGATATG AGATTAGTATTGAATTTTGGTTCTGGGTTGTCCTGTTCTGTTAATTTGGAACAAGTTTTGAGCATGGCTGATTTTTTGTT GTGTGTGGATTTTTCAGGTGATGATGAACTGTATCAGGGGGGTTCTTTTTGCTCAAGTCCCATGGATTTGGGTCGCTTGT ATACTATTAGCTCCAATGTAGATTCTTACTACCCTTCCACCAAGCGAGCTCGCGTGAGCGCCCCGTTTATCTTTGAAACT CTTCAAAAGCCTGGTATTGAGGTCCTTCCAGATGAGTGTCTATTCGAGATTTTCAGACGACTCCCTAGTAGCAAAGAGAG AAGCTCATGCGCCTGTGTATCTAAAAAATGGCTTATGCTTATGAGCAGCATCTGCAAAGCTGAAATTGAAGATGTTGAAA TGAGATCCTCAGATGAGGATGAAGATATTGAAGGCGATGGCTACCTTACGAGGTCTTTGGAAGGGAAGAAAGCCACTGAT GTAAGGCTTGCTGCAATTGCAGTTGGGACTAGTGGCCGTGGAGGACTAGGGAAGCTATCTATCAGAGGGAGCAACTCTGT TCGCGGTGTCACAAACCTTGGTCTCTCTGCAGTTGCTCATGGTTGCCCTTCTCTCAAGTCACTTTCTCTGTGGAATGTGT CTTCCATTGGGGATGAGGGTCTGTCTCAGATAGCTAAAGGATGCCACATGTTGGAGAAGCTTGACCTGTGCCTGTCTTCC ACAATCAGCAACAAGGGTTTGATTGCAATAGCTGAAGGCTGCCCCAACATGACTACCTTAAACATTGAATCATGCTCAAA GATTGGAAATGAGGGCTTGCAAGCTGTTGCAAGGTTTTGTCCCAAGTTACAATCAATCTCTATCAAGGATTGCCCCCTTG TTGGAGATCATGGAGTATCTAGTCTGTTATCATCAGCTTCTGAATTGTCAAGGGTGAAGCTTCAGTCCTTGAACATTACA GATTTTTCTCTGGCTGTTATTGGCCACTATGGAAAGGCACTAACACATCTAGTCCTCAGTGGCCTCCAAAATGTCACTGA GAGAGGGTTTTGGGTCATGGGTGTTGCTCAAGGTCTGCAGAAGCTTGTGTCCTTCACTGTTACTTCCTGCAGAGGGGTAA CTGATGCAAGCATTGAAGCCATGGGCAAAGGTTGCACGAACCTGAAGCAGATGAGCCTTCGCAAGTGTTGCTTTGTATCC GACAGCGGACTGGTAGCATTTGCCAAGGCTGCAGGAACCCTTGAGAGCCTGCAATTAGAAGAGTGCAACAGGGTCACCCA GTCTGGGATTATTGGTGCCATTTCAAACATCAAATCAAAGTTCAAATCTCTTACCATTGTGAAGTGCATGGGAGTTAAAG AAATTGATGCAGATGTGTCTATGCTTTCTCCTTGTGAAACTCTTAGATCTTTGGTCATTCAAAACTGCCCCGGATTCGGT AGCTCTAGCCTGGCTATGATCGGAAAATTGTGTCCCCAACTTCAGCATGTTGATCTGACTGGACTCTATGGCATAACAGA TGCTGGCCTTCTCCCTCTTTTGGAGAATTGTGAGGCTGGACTTGTCAAGGTGAATCTTACCGGTTGCTGGAACTTGACTG ATAATGTAGTATCAACCTTGGCCAGGCTACATGGTGGAACCCTCGAGTTGCTGAATCTTGATGGATGCTGGAGAATCACA GATGCAAGCTTGGTTGCAATTGCAGACAACTGCCTGCTGCTTAATGATCTAGATGTGTCCAAGTGTGCAATCACCGACGC CGGTTTAGCTGTTCTTTCCGGTGCCGGTCAGCTTAGTTTGCAAGTGCTTTCCTTGTCTGGCTGTTGTGATCTATCAAACA AAAGTGTGGCTTTCCTGACAAAATTGGGCCAAACCTTGTTGGGATTGAATCTCCAACACTGCAGTTCAATTGGCAGCAGC ACAATTGAGTTGCTGGTGGAGAACTTGTGGAGATGTGATATTCTGGCTTGA
CDS sequence (LotjaGi4g1v0271800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTTGGGTCGCTTGTATACTATTAGCTCCAATGTAGATTCTTACTACCCTTCCACCAAGCGAGCTCGCGTGAGCGC CCCGTTTATCTTTGAAACTCTTCAAAAGCCTGGTATTGAGGTCCTTCCAGATGAGTGTCTATTCGAGATTTTCAGACGAC TCCCTAGTAGCAAAGAGAGAAGCTCATGCGCCTGTGTATCTAAAAAATGGCTTATGCTTATGAGCAGCATCTGCAAAGCT GAAATTGAAGATGTTGAAATGAGATCCTCAGATGAGGATGAAGATATTGAAGGCGATGGCTACCTTACGAGGTCTTTGGA AGGGAAGAAAGCCACTGATGTAAGGCTTGCTGCAATTGCAGTTGGGACTAGTGGCCGTGGAGGACTAGGGAAGCTATCTA TCAGAGGGAGCAACTCTGTTCGCGGTGTCACAAACCTTGGTCTCTCTGCAGTTGCTCATGGTTGCCCTTCTCTCAAGTCA CTTTCTCTGTGGAATGTGTCTTCCATTGGGGATGAGGGTCTGTCTCAGATAGCTAAAGGATGCCACATGTTGGAGAAGCT TGACCTGTGCCTGTCTTCCACAATCAGCAACAAGGGTTTGATTGCAATAGCTGAAGGCTGCCCCAACATGACTACCTTAA ACATTGAATCATGCTCAAAGATTGGAAATGAGGGCTTGCAAGCTGTTGCAAGGTTTTGTCCCAAGTTACAATCAATCTCT ATCAAGGATTGCCCCCTTGTTGGAGATCATGGAGTATCTAGTCTGTTATCATCAGCTTCTGAATTGTCAAGGGTGAAGCT TCAGTCCTTGAACATTACAGATTTTTCTCTGGCTGTTATTGGCCACTATGGAAAGGCACTAACACATCTAGTCCTCAGTG GCCTCCAAAATGTCACTGAGAGAGGGTTTTGGGTCATGGGTGTTGCTCAAGGTCTGCAGAAGCTTGTGTCCTTCACTGTT ACTTCCTGCAGAGGGGTAACTGATGCAAGCATTGAAGCCATGGGCAAAGGTTGCACGAACCTGAAGCAGATGAGCCTTCG CAAGTGTTGCTTTGTATCCGACAGCGGACTGGTAGCATTTGCCAAGGCTGCAGGAACCCTTGAGAGCCTGCAATTAGAAG AGTGCAACAGGGTCACCCAGTCTGGGATTATTGGTGCCATTTCAAACATCAAATCAAAGTTCAAATCTCTTACCATTGTG AAGTGCATGGGAGTTAAAGAAATTGATGCAGATGTGTCTATGCTTTCTCCTTGTGAAACTCTTAGATCTTTGGTCATTCA AAACTGCCCCGGATTCGGTAGCTCTAGCCTGGCTATGATCGGAAAATTGTGTCCCCAACTTCAGCATGTTGATCTGACTG GACTCTATGGCATAACAGATGCTGGCCTTCTCCCTCTTTTGGAGAATTGTGAGGCTGGACTTGTCAAGGTGAATCTTACC GGTTGCTGGAACTTGACTGATAATGTAGTATCAACCTTGGCCAGGCTACATGGTGGAACCCTCGAGTTGCTGAATCTTGA TGGATGCTGGAGAATCACAGATGCAAGCTTGGTTGCAATTGCAGACAACTGCCTGCTGCTTAATGATCTAGATGTGTCCA AGTGTGCAATCACCGACGCCGGTTTAGCTGTTCTTTCCGGTGCCGGTCAGCTTAGTTTGCAAGTGCTTTCCTTGTCTGGC TGTTGTGATCTATCAAACAAAAGTGTGGCTTTCCTGACAAAATTGGGCCAAACCTTGTTGGGATTGAATCTCCAACACTG CAGTTCAATTGGCAGCAGCACAATTGAGTTGCTGGTGGAGAACTTGTGGAGATGTGATATTCTGGCTTGA
Protein sequence (LotjaGi4g1v0271800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDLGRLYTISSNVDSYYPSTKRARVSAPFIFETLQKPGIEVLPDECLFEIFRRLPSSKERSSCACVSKKWLMLMSSICKA EIEDVEMRSSDEDEDIEGDGYLTRSLEGKKATDVRLAAIAVGTSGRGGLGKLSIRGSNSVRGVTNLGLSAVAHGCPSLKS LSLWNVSSIGDEGLSQIAKGCHMLEKLDLCLSSTISNKGLIAIAEGCPNMTTLNIESCSKIGNEGLQAVARFCPKLQSIS IKDCPLVGDHGVSSLLSSASELSRVKLQSLNITDFSLAVIGHYGKALTHLVLSGLQNVTERGFWVMGVAQGLQKLVSFTV TSCRGVTDASIEAMGKGCTNLKQMSLRKCCFVSDSGLVAFAKAAGTLESLQLEECNRVTQSGIIGAISNIKSKFKSLTIV KCMGVKEIDADVSMLSPCETLRSLVIQNCPGFGSSSLAMIGKLCPQLQHVDLTGLYGITDAGLLPLLENCEAGLVKVNLT GCWNLTDNVVSTLARLHGGTLELLNLDGCWRITDASLVAIADNCLLLNDLDVSKCAITDAGLAVLSGAGQLSLQVLSLSG CCDLSNKSVAFLTKLGQTLLGLNLQHCSSIGSSTIELLVENLWRCDILA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 28 | 594 | 567 | 1.3E-284 | – | |
| PANTHER | 28 | 594 | 567 | 1.3E-284 | – | |
| SUPERFAMILY | 34 | 76 | 43 | 1.7E-8 | ||
| Gene3D | 40 | 77 | 38 | 9.6E-6 | – | |
| Pfam | 40 | 71 | 32 | 1.8E-6 | ||
| SMART | 42 | 83 | 42 | 4.0E-4 | ||
| Gene3D | 127 | 220 | 94 | 8.3E-15 | ||
| SUPERFAMILY | 141 | 380 | 240 | 1.02E-36 | – | |
| SMART | 155 | 180 | 26 | 5.2E-4 | ||
| SMART | 181 | 206 | 26 | 0.052 | ||
| Pfam | 207 | 230 | 24 | 0.012 | ||
| SMART | 207 | 232 | 26 | 5.4E-4 | ||
| Gene3D | 221 | 409 | 189 | 9.5E-38 | ||
| SMART | 233 | 258 | 26 | 1.2E-4 | ||
| SMART | 284 | 311 | 28 | 120.0 | ||
| SUPERFAMILY | 307 | 550 | 244 | 7.85E-37 | – | |
| SMART | 312 | 337 | 26 | 8.1 | ||
| SMART | 338 | 363 | 26 | 0.2 | ||
| SMART | 364 | 389 | 26 | 230.0 | ||
| Gene3D | 410 | 471 | 62 | 9.0E-10 | ||
| SMART | 418 | 443 | 26 | 43.0 | ||
| SMART | 444 | 469 | 26 | 0.012 | ||
| SMART | 471 | 496 | 26 | 46.0 | ||
| Gene3D | 472 | 563 | 92 | 3.3E-17 | ||
| SMART | 498 | 523 | 26 | 1.0 | ||
| SMART | 524 | 548 | 25 | 26.0 | ||
| Pfam | 525 | 545 | 21 | 0.29 | ||
| SMART | 550 | 575 | 26 | 260.0 | ||
| SMART | 576 | 601 | 26 | 720.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0271800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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