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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0272100 |
| Transcript ID | LotjaGi4g1v0272100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tetratricopeptide repeat (TPR)-like superfamily protein; TAIR: AT5G20190.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|P45778|GSPD_AERSA Type II secretion system protein D; TrEMBL-Plants: tr|G7JE38|G7JE38_MEDTR TPR repeat protein; Found in the gene: LotjaGi4g1v0272100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:63891488..63896502) extracted from Lotus japonicus Gifu genome v1.2.
CTTCCACAACCCAGCTTTTGATTCTTCATATCATTTTCCCCAACGTAGGGCCCCATATCCATTCATCACCACCGTCCAAC CAGATCCAACGGCTTCAAATCTCCACCAAAGGGCCCCATATCACGTGACTCTACACGCTTGGCGCCAAAACAACTGGCCC TACTCGATGAAATATCAACTGTTGAGATCAACTCCCACCTTCCACTATAAAAGACGCGTAACCAGTGCGTTCTTCTCTCT GACCAGTGAGTGAGTCAGCCACCGAGTTCTCCGATTCCGATTCCGATTCCGATTCCGATTCAACTCAGATTCTCGAACCA GATCCACCATAGCAACAATGCTTCTTCAAATCTCTTCAACTCCGATCATGAACTCGTTCCTTCCTCACTCGAAGGATCCA TCTACCGAACCCGAACACCTTCATCGGATCCCGAGAACCCGATCCGTCACGCTTTCGGGTTCCTGGTCGCCGATCGAAGG TCGCCGGAGCAGAATGACAAGAGCGCTATCGGAAACCGATCTCACCGCCGCACCGAAGCGGAAGCCTCCCAGCCACGGCC TCTTCGATGAGGACGAGGGTAAAGCGAGCACCCTCGCTGCCCGTTCGAGAACGACGTCGTTGGGTCCTGCGTTGTTTTCT TTCTCCGAGCTGGAGGAAGGTGTGAGCGGGATTGGTGTAAGGGATGAAGGTCTGCTGGCGTCGCGTGTGTTGGTTGAGGG TGGAGGCGGAGGCGGAGGAGGCCGCGGCGGTGGATGGGACCGGAGCGACGGTGGAGGTTCTGGGTTTTGGGATAAGAATC ATGGGAGTGATAGTACGGACTTGTATTACCGGACGATGATCGAAGCCAATCCAGGGAACCCGCTTTTTCTTAGCAACTAC GCAAGGTACTTGAAAGAGGTATGTGAAGAGAACCTTCTTTTGCAAATGGGTAATTGATTATTGATTATGATTTGTGTGAT GATGAAGGTTCGTTTGGACTATGTGAAAGCAGAAGAGTATTGTGGGAAGGCAATTTTGGCGAATCCAAATGATGGGGAAG TTATGTCCATGTATGCAGATTTGATATGGGAGAGCTATAAGGATGCTACTCGAGCTGAGACATACTATGATCAAGCAGTG AAAGCTTCCCCTGATGATTGGTAAGAAACAACTTTAGCTCTATTTGGAATATTAGTTAGAGAATTGTGAAAACAATTCAT TTGGAATGAAATGATTGCATGAATTGAATTGAAATTGCCAATAATCAAATAGTTCAAGGACTAAATCATAATCTGTTAAT GCTAAGGTAGTTTTTGTTAGGGTTGTTAATGGCGGATAGCATAGCGGGAAGCCCAAAATATGATATTTTGAGCGCTATAG CGGATAATAGTGGAGTAGCGGTGAACCCCAGGGCGCTACGCTATAGCACTATTGCACCGCTATAGCGCGCTATTAACATG CCTGTTTTTTGTTTAGTTTATAGTTCATTATGTGAATTAACAAACTGCTTGTTTTTGCTGTTGCAGTTATGTTCTAGCAT CATATGCACATTTTCTTTGGGATGCTGAGGAAGACGATGATGTAGAGCAAGAAAATTCCTCTGAAAAGTCTCTCAGTTTC TTCCATGGAGCTGCTGCTCCGCCGCCTCCTCCCCCTTTAGCCGCTGCTTCTTAAGTTACGTGCTGCCTTTGGTGTCTAGC TTTCATATGACTATCTAACCTTTGTTTATACTACTTTGACCTTGTAGTATTTTTGGCCGACGAATATAGTTGTAATGTTC TGTGTTCACCTTGTTGTCAATGTAGATTCTGGTAGGAATACAGGAGAATAAAAGATGCATTCCTATGCCTTTTGCTTGAA TTGTCAAGTCTCTATCTTCTGGCATGCTTGTATAGCTGTATTATGTCAAGAATAAGGATACTTGCACATTTTTTTGGGTT ATATTGTTCACACTAAGAAGGTTGCTGATTTTGATTTTTTTTAGACAGCTGGCATAATGTTTAGACAAATCAAAATTGGT AGGCGTATTGGGTGGGATGATGTTTGAAAATAATGTTTATCAATTGGGAATTTGCTACCTCTTGCTTTATTTGTGTGAAA CTCATGATAATCAGAAGGTTCAGAACTTGTTTTTGCTTTTTTTAAGAGTAATGCTACATCTTCCTACTTCATCATCCTAC ATATCTTCCTACATACTAAATGGAGAAAGAATTAAATGTTATTAACACTTTTAAGATACCAAATGCATTAATGCATTCTC CATTTAGGATTTGTATGAGCTTTTGTAGGAGGATATAACATTACTCTTATTTTTAAAGAAAAAGTACTTCAATTTACAGA GGTGTTGTATGACATTGTAATCATACTTGTAGAATAAGAAACTTCATTGTAATGACTCCAGCTAAAGAGACTTGTTTGCA TTTCGTTACAAGACTGAACTATTTATAATAACACTAATTTAAAATCCCATTCTCAGTTTATGGATTTGTTACAATGATTG CTACTTTCTATTGCACATTTTATTAGACTATCATAAGACCCAGAACCAGCCAAGTATTGAACCACCAACCAAGCCAAAGC CAAGGAACGCAATCATCACAATAGCAGATAACTCTGATTCTGAGAAGGGCACTGACTTGGGAGCTAGAATCATAAGTACA CTGGTGAGGTACCCATTTGTAAATCCAAGCAGAAATGTCAAAACCACTATTGGCACTTCTGTTTTCAGCCACTTTGGTCC ATGAAGACAAACTACAAACATTGGATAGAAAAGAAGCCTTGTTGTGGCAGCCCATATTGCTTTTGTGATAGATTGTGGAA CACAGAAGGCAGTTAATGACTTCCCTGTAAGATCTGCTAAATTATAAACTGTAATCAGTATAATAGGATACCAATCCTTA AGAAGCTCAGATTCAAGATCTTCTGCAATAAATCCTGGGAAAATAGACAGAGTCACTATGTAGATTATGAAAATCCCAAA AGCTGGTCCCTTAATTTTAGCTGCCACTGCCCAAAATTTTGTCCCTGAGCATACGGTGTTGTTCTCCTGAAGAAGCCTCT GCTGATACTGCTGCATGACTGGTAACTTGTGCTGCAAGTTGCTAAAGACAATGCAACACACGAGGAAAACTATGGCTACC ATGAAGTACAAGTGGGCACTTATCTTGAGTCCCTTTGGGGTTTGTGGGAGTGATGCCTTGGTTATGATCCTCAAGATTGA AATTATAATACCTGCCATCACAGAAGATTTTGATTAGTATTGGAACCAACTTTGACAGCTCTTCAGTTTCAAAGTTACTC AGATAGCATGTTTCATTCCATGATGAAATGTTCTAGAATCACTTCTAGATAAAAAAGCTACAAATCTCAGCTTCTGAGTA AATGTGCTTTGGTTTCTGTACAAATCATGAAATCAAAATAAACTGCTCTATTGATTACTGAGATTCTAATTTTCGGCAGC AGAAATGGCTTTAGCTGTACATGTCAAAACTAGAGCTTCGCTTGAAACAAGAGAAAGTGAAAGGAAATAATGGGAAAGAA ATCATAAAAAGGAGGAAAGCTTAGTTAAGCAAGAAAAGTAACTAGATCAGTAGCAGGTTCAAATTTGTAGTATTTGAATT TAGTTCAAGTGGCTGTCGATGTAAGTTGTAGCATGGTTTTCTCAATAGATAAGATTATTTATAGATTATACATGAAAGAA TCTGCTAAATACATGGACAATATCTTGACATATTGGTGGGAGTAAGATGCAATAGCCAGTCAAAAATCAAGAAAAGGAGA CTCTGGAATCTACTTTTGTTTTTGCCCCTAGTGCCCCTAACCTTCAAAATCTTGTATATACGTAAAGAAGATCTTGTTTA AAACTGCTTTATTTTAGACATGCTTTATCTTATGCAGTGTTATTATATTCCTAAGGATTTGTTCAATCATAGGAAAACAT AATCTGCCTGTTTGGAACAAAGAGGAAAGTAAAATTGAACACTTTGGAGTGCACTGAACTGTGTTTTACCTGAGGAAGCA GTTCCTGCAAAAACAGCTTGCATATACTGTTTGGGGAGTTTTCCAGCTGATCCTATCAAGCTTCCACCTACCAAGCCATC TGCTAAACCACACACTACCACAGCTGCAACTGTCAAACCTAAGGCACCGCTCGGTCTCTCTTCCAGACTGGTGCTGCTGG AGGTCCAGTCGATCACCGGCGCTACCATTAGAGACACAACAAACATGGAGAATCCCAAGTTCAATCTCAACCTCAATGTT GTTTTGCTCCAACTTCTCCAACTTATCATCACAAGAAGCACCAGCACTGATGAAATCATGTAAGCCACCGAGAAAACCCT TTCGATGTGTTCAGTCGGGTAGAGGTAGTAGAAGTAATCAACTGCTGTGATCAAGGCATTCCAAGGAAGCAAGTTTCCAG CACCAAGCAAGAAATGGATTATGTAAGCAACTCTGTAAGTGTCTGTTCTCTCATCACTAGAGACCAGCTTCACAGCTTCC ATTGCATTCGTGGTTGATACTTTTGCTGAAGTATGATGATATATGAAGAGAGTCAGAAGTGATTTTATCTGTGCTTAGAA GTAGTCTGAAAATGCTTGCATAGTTGGCTGATACAAGTAGTTCTACTTATGCTATAGCTGGTTTGGGACTAGTTTGACAT TTCTGCCAGCACTTATATATAACACATGCACCCACACATGTGATTGATGGGGTTGGACCTGGAACCGATATGCTTAATGT ATGAAGAAGAAAAATTATGCTCTGTGGGGACAACAACGGATGGGTGATATCAGATATACCATTTGGTCATACAGTCACAC CATGTGTAAGCTGTCTTGTGACTCTCTTTTACTTGACCCCCAATTAACATCAATTGGATGCTTGATATTCATGACAATGG CCCTTCCATTATATAAGGCCCTATTGGAAGAGTTTATTTGAACTTAACGTATAACATAAATAGTATAAGTGCTTATGTAT GTATTTGAGAGAGTTTATGTAAATAGCTTATAATCTACTTATAAGTTGTTTTGAG
CDS sequence (LotjaGi4g1v0272100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTCTTCAAATCTCTTCAACTCCGATCATGAACTCGTTCCTTCCTCACTCGAAGGATCCATCTACCGAACCCGAACA CCTTCATCGGATCCCGAGAACCCGATCCGTCACGCTTTCGGGTTCCTGGTCGCCGATCGAAGGTCGCCGGAGCAGAATGA CAAGAGCGCTATCGGAAACCGATCTCACCGCCGCACCGAAGCGGAAGCCTCCCAGCCACGGCCTCTTCGATGAGGACGAG GGTAAAGCGAGCACCCTCGCTGCCCGTTCGAGAACGACGTCGTTGGGTCCTGCGTTGTTTTCTTTCTCCGAGCTGGAGGA AGGTGTGAGCGGGATTGGTGTAAGGGATGAAGGTCTGCTGGCGTCGCGTGTGTTGGTTGAGGGTGGAGGCGGAGGCGGAG GAGGCCGCGGCGGTGGATGGGACCGGAGCGACGGTGGAGGTTCTGGGTTTTGGGATAAGAATCATGGGAGTGATAGTACG GACTTGTATTACCGGACGATGATCGAAGCCAATCCAGGGAACCCGCTTTTTCTTAGCAACTACGCAAGGTACTTGAAAGA GGTTCGTTTGGACTATGTGAAAGCAGAAGAGTATTGTGGGAAGGCAATTTTGGCGAATCCAAATGATGGGGAAGTTATGT CCATGTATGCAGATTTGATATGGGAGAGCTATAAGGATGCTACTCGAGCTGAGACATACTATGATCAAGCAGTGAAAGCT TCCCCTGATGATTGTTATGTTCTAGCATCATATGCACATTTTCTTTGGGATGCTGAGGAAGACGATGATGTAGAGCAAGA AAATTCCTCTGAAAAGTCTCTCAGTTTCTTCCATGGAGCTGCTGCTCCGCCGCCTCCTCCCCCTTTAGCCGCTGCTTCTT AA
Protein sequence (LotjaGi4g1v0272100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLLQISSTPIMNSFLPHSKDPSTEPEHLHRIPRTRSVTLSGSWSPIEGRRSRMTRALSETDLTAAPKRKPPSHGLFDEDE GKASTLAARSRTTSLGPALFSFSELEEGVSGIGVRDEGLLASRVLVEGGGGGGGGRGGGWDRSDGGGSGFWDKNHGSDST DLYYRTMIEANPGNPLFLSNYARYLKEVRLDYVKAEEYCGKAILANPNDGEVMSMYADLIWESYKDATRAETYYDQAVKA SPDDCYVLASYAHFLWDAEEDDDVEQENSSEKSLSFFHGAAAPPPPPPLAAAS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 19 | 19 | - | – | |
| MobiDBLite | 1 | 81 | 81 | - | – | |
| PANTHER | 1 | 273 | 273 | 2.0E-100 | – | |
| PANTHER | 1 | 273 | 273 | 2.0E-100 | – | |
| MobiDBLite | 131 | 153 | 23 | - | – | |
| Gene3D | 153 | 275 | 123 | 1.3E-11 | ||
| SUPERFAMILY | 163 | 263 | 101 | 7.59E-11 | ||
| ProSiteProfiles | 163 | 244 | 82 | 8.587 | ||
| MobiDBLite | 260 | 293 | 34 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0272100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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