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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0272500 |
| Transcript ID | LotjaGi4g1v0272500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Methyl-CpG-binding domain protein; TAIR: AT3G15790.1 methyl-CPG-binding domain 11; Swiss-Prot: sp|Q9LW00|MBD11_ARATH Methyl-CpG-binding domain-containing protein 11; TrEMBL-Plants: tr|A0A1J7I076|A0A1J7I076_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0272500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:64012730..64021574) extracted from Lotus japonicus Gifu genome v1.2.
TGATTGTTGAAAATGCCCAACACGGAAAATTAGAGAGAAAAAGAAGCATAATTTTATGAGATTCCTTCCACAACGTGTCT CTCTTCATTTCAATTCAATTATTATAAATAAATTAAATATAAATAATAAATAAAATTTCTTATTTTCTTCTCTCTTGGTT TCTTCTATTTTCTCCACCACACACACACACTCGAACAGAGGCAAAAATCAAACCAAGCCAAAACAAAAACAAGACCAAGT ATGTTCCTCTTGTTCCCCCGCTTTCTTCGATTTTCATAATTTTATCATTTTATCTTTCTAATTTTCACAATTTTGGGTGA AATTGTGATACACTGATTTGGTATTTTTCTGTTGATTTTTTTTTTGGGGGGAAATTGGCAGGGTGAAAATGGCGAGTTCA GTGGAGAAGGAGGTTGGTGGTGGTGCTGCTGCAGCTGAAGGTGGTGTGGAGGAAACTGTGTCTTTGGAGCTTCCTGCTCC ATCTGGTTGGCAGAAGAAGGTTTCACTTCTCATTCCTTGTTTTTCCCCCTTTTCTTTCACTGCTCAATTTTAGGGCAATT TGCATCTCGTTTCTTCTTAATTGCGTGTTTCCTCTCGAATTTCCATGTGGGTTTCGTTTGATTTTGCGATTTGCGTTGGT TAGATGCTATTCTCAATTTTAGGGTTTTGATTTTTTTTTTCTTTCAATTACTTACTTCTTCTTGAATTCTGACATGCCTT ACGAAATTGACTTAGGGTTCGGCGTTTTTGTCCTTTGAATTTGGGGAATTATCTAGCTGTTGAGTGTTTAGTAGTCTATT CTAGGGTTTTGTAGATTGACCTAATGACCTGTATTTTTGTGTAAGGGAATGGATTTTGATGGACTCTTACTGTGTCTCAT GTTATCAGTTTTCATTTCTAAAAATATTTTTGGAGACTGCTGCTTATAATTCTAGCTCTGTTTGGAAGGGTTGGGTTCAG ATTTGATGAATGCCTGTACTAAGTATTATATTTAGGTGTTTCATTGTTACAAGAAATTGTCTTTTCTAACTAATAATTTT GACTGAAAAAGTTTGTGCTCATATATATATTGTGGCTTACTTTTTAAATTTCTTACTCTGGTCTTGCAATTTTTTAATTT GGTATTGGATACCATGCAAGTGGATTGATTGTTCTTGATTTGTCATCGATCATATTTTCACCTGTACATGGAAATTCCAT GAAGTGTGACTTTTTCACATATGGTATAGCGTGAGGTGTTTTATTTACCATCATGATAATAGTGATTTCTGGTGTTGTTG TCTGTTCAGTTGTGTTTATTTATCTGTTCTAGAGTTAGTCCTATTATGTTCAAAAATTTCCAAATAACTTCCTTTTTACA ATGATAGTATGTTATTGCTTTCCAAAATGACAGGAAAACATGGGTAACGTTGATACAGTTGTTGTGAGTAAATACATCAT TCTACATTTTGGAGATATCTTTGACAAATATCCATTCTTGGGTGATCATGATAATTTTATTCTTGTATAACCAGTTGGGT GTTTCAATAAATCATTTTTTAATACATTGCATAATTGATTTGACTGAAAATGGTTGGGGCTGTGTTAGAGTAGATGAGGT TGGACTCCAGGATTGTGATTTAAGTTATCATTCTACATTTGCCAGCACATAATTACAAGTAGCCATTATTGGGGAAACAT GAGTAGTTTTAGTCTTGTATCAGAGTCATTTGTCAAGTGCTTAACAAACGCCCCTTCCCCCCAAAAAGGTGAAAAAGATA GGTCACTTAAATTGTAAACATGTCCTGAGAAGTGGACAGCCTACACAGTTTGTTCGTTCAGTATGTTTAGTTTTTTCGGT GTTTAGCTAGCTGTATGACCGTGATCCAATTATCTAATTGTCCTCTTAGCATTGACCTCAAAATATCACTGGGTGTCGAT TCATTCAATAGATCATCCCTATTGACTCAAGTAATTTTTAAAACATCACATAGTTTGTTAGACTGAAAATGTTTTACAGT GGTGCATACTATTATAGAGTCTATAGACCTTAAGCTGAGAACTTTGACACCAGGCTTTGTGTCAGCAAATCCAACACTAA CCAGAGCATGAGCCACATGGTATATCAATACCCAGTCATGTGAAGTATGCGCACATATAAGCCAGTGGGTGCCAATGTCT CAGGTTGATTGTTGACACATCCTCTTAAAAAATTTAGTGGCTCAGACTTAACAGTGTACTTATTTGATCTGGTGCATAGC TGTGCTCTGGATATTTCAACACTTGTGGTAAGAAGAGGAGCCATAAAGCTTATGCAAATAGTGCAATTTCTATGTTAATG TACTATTTTCAAAGAAATCAACTTCATCAGCACTTGTTTGACCTTTTATGCGTCCTCTTTACTTTGTGTGAAGCTTAATT CAATATTATTAGATAAATGTAATGGTCTCAGAAATACTTTCTCTTATTCGCAAGATTCTACAACATGTCTTGCATTCTAC TACATGAAACATTTTATGCTACTTTTGGTAGTTAACTTTGAATGAGCATAGAGAAATCCCTATTAAACATTATATGGTTT GTGATCATGTGGGGAAAATTAATTTTGTTTTTATTATTTTGTTGTTGTGAGCTGCATAGTTATCATGCATCTTTGCCATA CACAAAAAACAACACGATATTATAGAATTCATAATTCTTCATTGGAAGAATGATCTTGTTTCTTACCATGTAGTAATACT CAAATATTATCAATGTCATATTGCATCCATTTATTCTAATATTATGTTAACATTCAGAAAATTAGCTTTGAGTCTTTCAT TTATTTTCCCCCTCATGTTGTGCACAGGATAAACCCACCATGTAACTGTTGGTGAATTTCTTGACAATAAGCCTTTATAA TATTTCTTTAAGTAAATTACATTGATTCCCTGAGTTTTACTAAAACGTATTCAATCACCGTATTAAACATGTTCTAGAAA CACATATGACCCTTATGCAATTTTTTTAAGGTGAGACTATGGATTGTTCTATTCTCTTTTCCATTAGCTCATCCTCAAGA TGTGCACATTTTCTATATATGATTTAATAAAATAATTTAATTTGCACATTTTCTATATATGATTTTATATCATAATTTAT TGCATATGTCCAGGGTGATCATAATGGACATGAGGTGATATTGACTGCTTAAGCTCCTCACAGACTCACCCTTTTTCCTA GATAAATAGGCCCTCTGAGAAATAAACTACATAGAGGTCTTTGTATAATATAAAACTAAATGGGTATTTATGTAAGTTTG TATTGGCAGTATTGTTTACCTTATTTCCTGCGACCAATGTGGGTCCTCTTACTACATGATGTTGTCTATTTTCTATAACT GCAGTTTTAGATTGGTAAGTGGTTCATATACAGTCCATGTGCATTTTTGTGTCTTTTGGTCACAGTATGAGCCTCGGGTA CTTGTCCTCACATTTTTCGTCTCTTCCACACCATTCCATGGCCTTTCACCTTTCCCAGGTGTAGCCTGAATGGAAGAATT AAAGAGAGAAAGAAAAGCCTTCTGACTGAACAAGGTTAATTTAGTACCATGTTACTCCCTTTTGCTGAAGTTTAACAGTA AAACTGCCAGTTTAAAACAGCCTATGTTATTTAACTAGTTATGCATATGCTTTTTTTTTGAGGTAAGGTTCACCATTTGA ATTAATCAGATAATGCAGAGAAAAAGGGGAAAAAGGGGAAAAAGGGGAAAAAAGAGAGCAAACAGAATTTTGAAACTACT TTTCTAATATTCAAATCATTAAATGTGGCTTAATTGCATGAGCACCAAAGCCAAGTCTAATGTCTCATGATATGAAAGTA GTCAAGACAGCTTCATTTTTCACATTGAGGATTATTTGCAGAATGTCAATAACTTACCCAAAATCTTGTGTAGTTTGTAT GTATTACAGTTGTTAATTTGTTACAAGTTTTTTGCATATAAGATGATTCATAAATTATATCTCCTTTGCAGTTCTTTCCA AAAAAGTCTGGAACCCCAAAGAAAAATGAGATTGTGTTCACTGCACCAACTGGAGAGGAGATCACTAGCAAGAAGCAGCT AGAGCAGTATTTGAAAGCACATCCTGGTGGTCCAGCTGCATCAGAATTTGATTGGGGCACTGGTGAGACCCCAAGAAGAT CAGCAAGAATCAGTGAGAAGGTCAAGGTAACTCCTACACCAGAAAGTGACCCCCCAAAGAAACGTGGCAAAAGATCATCA GCTTCTAAAAAAGATGCTTCCGGGGAAGAAGAGAAAGAGGAGACAAAAGATGTGGAAATGCAAGAAGCTGGTGAAACTAA AGATGCTGTGAAGGAAAATCAAGATGAGAACAAAGCAGAGGATACAGATGTCAATCAAGATGAGAAGAAAGCAGAGGCTA CAGATGCCAATCAAGATGAGAAGAGAGCAGAGGATGCAGATGTCAAAGAACCCACTCATCCTGGAGAAAATACTGATGGA CCTAACGATGAGGGAAAACTCAACACTGCTGATGAAGAGTTACAAGCCTCAAAAGAGAAAGTTGATGACAAAGGAGCTGA GGGTTCTGATGCTGTTCAGAACAAAGATGATGGCTCTGGGGAACCAGAGAAATCAGAAGCAGCCCCTACTACTGAGCAAA AGATTGAAGTGGAAGGAGAGAACAAAGAGGAACATGACAGAGGCATTCACGAGTCTGGAGAAATCAAGGACAAAGAAGGA GCAAAGGTGAATGATGAAGAACATTTTAAGGTTCATGATATAAACCAGAAAACTGAATCAGGGGTGACTGTGAATGGAAG TTGAACCAGTTAGGTCAAAGCCGGTTAATAAGGAAGATAATAAACTCTTGGGCTCTCTTTTCTCATTCTGACCCGTCTAG ATTTGTCCCAGTATGACTGTAGTTTATGTTGTTAATGTCATTTACCTGATTGTTTATTGAAATGACGATAGACAATTATA GAGTAGTCCTGTGGTGTACCATCCGTATATGCATTGGAGAGACGTATAGCTTCTAGTTCCCATGGTAGCATTGTGTTGTA TCTGTAATGTGATATGGACATGTAGTAGTGTAAGGTCGTCATCCTAAATATTCAGTTGGCTCCCGAACTATTGTACCAGA TCTTATCTGGTTGATGAATGTTGATGTTGCTTATGTTGTATGTCTAGTAATAAACAACAATAATTACCATTAACCACACG CGTGGATCAAATGGTGAGATGTTGTGAAGTTAAACCAAAGGTTTCAAGGTGAATTTTTGAGTATCTTGCGTTGATTAAGA TTACTTTCTGCAGAGTAGTCTTAAATCAAAATAAGTCCTTGCAATTGCACTGTTAAGTGAAAGACTAATGCATCCAGTCA AATTCTCAGTGACATTAAAATTGCAACTGTGAGAGATTCACACCCAAGCTCAAATTTCCTAAAAACGAATGGTAATTGCT GGTCTTTTTCTCTTGATGCTGTATGAGGGTAAGATTGCTACAAGTCACCAATTAGGTGACAGAATAGAAGGGAAAATGAA TGTAACTCTCTGTATATATGTTCAATAAATCAAGATGAAGTAAAATGTCTTGTAGCTTCCATCAAAGATCAAAGCCCCTT AAGCTGAGCAACCAGCCCTGTCAAGGAGGTCCACTTCTCAAATGCGCTGGCCGAAGACACAAAGGCCAGTTTGGATGACT CAACATCTTTCTGTGAAACTGCCAGAAAACCATGAATAAGTGTTAGCATTGTGATTGAAATCTATCTACAAGGTTGCACA TATACTGCCTTAATTTTCCTTGTGATAACCAAAATATCAACAGAACTCTCAGAGGTGGACAAGATATATGGATGCGGGAG CATATTTTCTGTCTTCTGTGGAACTTGAGTCCTAATTACATGTAACTCACCTGATGAAATCAATGAAGCTATCGAAGAGC TGAATGTATCCGCCTCAGACTTTTCTTCAGGACTGGAACTTAGCTGTTCAAAGGTTACCAAGAAACTATGAGATATCTAA TTAAGAAACTACTTTATGCAGAGTTCAAAGGTTACTACTAAAGGAAAGATTAAATTTTAAAAAAAAAATCTACTAAAAAT TCATCAGCCAAAAGTTCAAAACTTATATATGAAGATGAAGATTAAGAGGATGTTAACCACCGGATTTGAAATTTGTCCAC ACCACAGGTTTAATCTTTACCACTTGAAAATGATAATAAACGTACCAGTTCTATTGCATTTTGAAATTCAGAATCTAATA CAGATATATGAGAATTTAGATACCGATGGAAAAAATTAATGGAAGTTAGTACATAATTGTGGATGTTATCATGGCAAAAT TTTAATGCAGGTTTCCGGCCTTTTTATCAGTCTAATTTTTATGATGAAAGATTTCATAACAAAAGTGTTCATAATGAATA CATTCATTTAAGACACAGGATTTACCTTGTTCAGAGCTATGTTAGCTTTTTGGACCCAATCAGTATCCTTGCCTCTCCCA AAGACAGAACCAGCTGTAGATAGATCATTGTTTTCAATTGCTTGACCAACTTCACTCAGTTTGTACACCACATCCTGAAG ATACCCTGCAATTATTTTTCACTCTTCAGTACGAAAAAATAAATTTTCCCGCACTGAAATAGAGAATTCAGTGCAGAAGA AGGCAGCCTGAAAATTTTCTATTATTCTACTGATAAAAATTGGTGTCTTTGGTTTCATGAATGAAGGAATAGAAGTTATC ATGAGATAAAAACATGAGTTTTATATCTCACTCTTGAGATTAACATGTTTGGGAGGAGAAACATGAACTCAGCCAGTGTG ACCACTTCCAACCTTAAATTATGTATCACTTTATTCCCTAAGCTGGAACTGCATACATGTTCTCACACTTGAAAAGGGGG AATATGATGTTGGGACTCATTTGAAGCCCACACTTGAAAATAGTGGAAGTTCAAGTGTGAGTGTGAAGTCACACATATTG GTCAATTAAGGATAATATATAGTAAAGGTCAATAGACTTAAGGTTTTGGATCAAGATGTGGTGTCAAGTCACTATTATGT TCTACTAGCTCTTAACTCTGTTGATACAGTTCTCCCCTCTTCTAGGCTGCCTCTTATCACTAACAAAAAAATTATTCGCA GTACAAGGGATACTATCTAATATCAGTTGGATGAAATTATTGTTCATTTGAGAATTGAGATCCTTAAGAAATGGGTTACT ATAATCTTAAAGGTGATGACCAACTCTACTTTGCATTCATGTTTTTTTTAAGTTGAACAGAATGTATCCCCTCCCCTCCT TTCATGTTTTTTCTTCTCAAAAAGCGACATTCCAATGCACCAAGACAGGAATCCAGCTTATTTCCAAACACACTCTAAAT TACAACTGCTCTGTATAAGTTAGATTTATTAATCCAATTGAAAGCTTGTTCCCTTTCCCATGAAACTAGAGATTCAATTC ATATTTTGTGAAATAGGAAAGAAACCGATGATTGAATGTAATATATGAATTTACTCTTAATGCAGATTTAGTGTAATAAA GCTTTGACTTGCATCCAATGAGTTGTTATCACTTAAATGTAGCCCTCCATTTAATCAACAAAGTCACACTCATTAAATGA GATATCTGATATCAATATAAGATTAAGTGATACTATCAAAATCTATTACCCCATTGCATTAAAACTAAACTTAAGCCAAT ATTTGACAAAACACACAATAGAAAAAGAAGCCAAGCCTTGCAGTTCATGAAGCACTTTTGTTCAAATGACCACTGACCAC TAGAATTGGGATCAATTACTTTACTTCCAAATATGTCCATCTAACTTAAAATTTACATGCATCAGCATTACAGGGTGAAC AGAGTCAGGGTGCGTTTGCGTAAACAGCATAATCAAGTGTTTATGGCAATTAGTGATTATCTCATAAGCAAATGATAAAC TTATTGAAATAAAATGTAAATAATATATGGATAAGCATAAACTCTTATTCATAAGCTAAAACTAATCTGAACAACTTATG AAAGTAAGCTCAAAATAGCTTTAGGCAGGTCATAAACTATTTGCATAAGCTCTACCAAATACTTACATTAACGTTTCTGT CATAATATAATATCAAATAATCTCTTCCAAACTGGACCTCAATCAATTTAAGGAAAGGAACATGAAAATGAATTTCATAG AACAAAATGTCATTTTTGCAACACCAGACCTGTTTCTTTGGTGGATGAACTGATCACACCTTGTTTCTCAAGTCTCTTCT TTCTATCCTTCTTTACTTTTTCCAAGAGCTCCAGATCATCATCTGCCTCAAGTATTGCTGCATTGGCATCCAAGCACCCC TTACCAGCCAATGAAAGCACAAAGCTGGTGAAAAAACTGATGGACAAGTCTCTTTTGGTCAAAGTTGGAAGTGCTGTCTG GTTCACTGCTTTGCAAAGAGTTAATTGCCTTTTCACACTGCATTTGATGTGGTGATGAACATGTGTTAGTGTTGCTGATG ACAAAGAGGGTGAGGATGATGGTGATGATGAAGATGATGGTAGAAGGAATGGGTTTGCAGTTGAGAGAATATTTGTTGCC ATGTCTTGTTTTCTTCTTTGTTCCTCTTTCCTTTTCTTTTTACTTTTCTGGGCCTGAAAATTCAGAAGAGATGGCAAGTT GGAACCTTTGGAGGATAAGGTTGATGGATTCTGTAACCTGATCCAGTCATTTTTCTAGATCATGAAGGGTAATGTAGTCA TTCAAAAGCACCTGGTGGTACAATTTCTCATCCATGGTGGTGGCAACAATTTCTTCCAAATTCCAATAAAAAGTATTTTA ATTCATTCATACTTTATTTTGTCTTCCATATCATTTTCAATCTTT
CDS sequence (LotjaGi4g1v0272500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAGTTCAGTGGAGAAGGAGGTTGGTGGTGGTGCTGCTGCAGCTGAAGGTGGTGTGGAGGAAACTGTGTCTTTGGA GCTTCCTGCTCCATCTGGTTGGCAGAAGAAGTTCTTTCCAAAAAAGTCTGGAACCCCAAAGAAAAATGAGATTGTGTTCA CTGCACCAACTGGAGAGGAGATCACTAGCAAGAAGCAGCTAGAGCAGTATTTGAAAGCACATCCTGGTGGTCCAGCTGCA TCAGAATTTGATTGGGGCACTGGTGAGACCCCAAGAAGATCAGCAAGAATCAGTGAGAAGGTCAAGGTAACTCCTACACC AGAAAGTGACCCCCCAAAGAAACGTGGCAAAAGATCATCAGCTTCTAAAAAAGATGCTTCCGGGGAAGAAGAGAAAGAGG AGACAAAAGATGTGGAAATGCAAGAAGCTGGTGAAACTAAAGATGCTGTGAAGGAAAATCAAGATGAGAACAAAGCAGAG GATACAGATGTCAATCAAGATGAGAAGAAAGCAGAGGCTACAGATGCCAATCAAGATGAGAAGAGAGCAGAGGATGCAGA TGTCAAAGAACCCACTCATCCTGGAGAAAATACTGATGGACCTAACGATGAGGGAAAACTCAACACTGCTGATGAAGAGT TACAAGCCTCAAAAGAGAAAGTTGATGACAAAGGAGCTGAGGGTTCTGATGCTGTTCAGAACAAAGATGATGGCTCTGGG GAACCAGAGAAATCAGAAGCAGCCCCTACTACTGAGCAAAAGATTGAAGTGGAAGGAGAGAACAAAGAGGAACATGACAG AGGCATTCACGAGTCTGGAGAAATCAAGGACAAAGAAGGAGCAAAGGTGAATGATGAAGAACATTTTAAGGTTCATGATA TAAACCAGAAAACTGAATCAGGGGTGACTGTGAATGGAAGTTGA
Protein sequence (LotjaGi4g1v0272500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASSVEKEVGGGAAAAEGGVEETVSLELPAPSGWQKKFFPKKSGTPKKNEIVFTAPTGEEITSKKQLEQYLKAHPGGPAA SEFDWGTGETPRRSARISEKVKVTPTPESDPPKKRGKRSSASKKDASGEEEKEETKDVEMQEAGETKDAVKENQDENKAE DTDVNQDEKKAEATDANQDEKRAEDADVKEPTHPGENTDGPNDEGKLNTADEELQASKEKVDDKGAEGSDAVQNKDDGSG EPEKSEAAPTTEQKIEVEGENKEEHDRGIHESGEIKDKEGAKVNDEEHFKVHDINQKTESGVTVNGS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 50 | 50 | - | – | |
| PANTHER | 14 | 307 | 294 | 1.2E-90 | ||
| PANTHER | 14 | 307 | 294 | 1.2E-90 | – | |
| SUPERFAMILY | 19 | 115 | 97 | 1.44E-23 | ||
| ProSiteProfiles | 20 | 90 | 71 | 14.267 | ||
| Gene3D | 21 | 90 | 70 | 4.8E-8 | – | |
| Pfam | 21 | 88 | 68 | 7.1E-13 | ||
| MobiDBLite | 72 | 307 | 236 | - | – | |
| MobiDBLite | 106 | 295 | 190 | - | – | |
| Coils | 207 | 227 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi4g1v0272500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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