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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0273900 |
| Transcript ID | LotjaGi4g1v0273900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT4G14850.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q0WSH6|PP312_ARATH Pentatricopeptide repeat-containing protein At4g14850; TrEMBL-Plants: tr|I1LE43|I1LE43_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0273900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:64304404..64307423) extracted from Lotus japonicus Gifu genome v1.2.
GAAAGGAGAGAGAAAATAAAAATGTGATAGTTGATTTGATTAATAAAGAAGAGAAAAATAAATAGAATTTAAGGTGGAAA AGAGGTGGAGAGATGTGTATATATCATAACTCATATTACTTATTACTTGACCTTTATCATCATGCACAACTACACTGTTC CCTTGTCCATTTTTGTAGCGACAGAGTAGAAATAGTGGCGGTGCATGCTTGAAAGCGCCTCACCCATTAGCCGCCACTAA TTTCCTGCAATGAACTTTCATCCTCCAAACCTGCTTAGTAGCTTGCTAGAATCAGCAGTTTCAACTCGCTCTCCTCTCCT TGGTCGTGCCGTCCATGCACAAATCATCAGAAGCCATGAAACCCCTCTGCCATCGTTCCTCTGCAACCACCTCATCAACA TGTACTCCAAACTCGACCTTCTCAACTCAGCTCAACACGTTCTCTCACTCACCCACCTCCGCACCGTCGTCACCTGGACC TCCCTCATCGCCGGCTGCGTTAACAATGGCCGTTTCGTCGCTGCTCTCCTCCACTTCGTTAACATGCGCCGTGACTGCGT TCAGCCTAATGACTTCACGTTTCCTTGTGTTTTCAAAGCTTCGTCGTCGTTGCAGATGCCCATCACCGGAAAACAGGCTC ATGCTCTTGCTTTGAAGGGTGGCCAGATATATGATGTGTTTGTGGGGTGTAGTGCTTTTGATATGTATAGTAAAACTGGC CTAAGAGTTGATGCTCGGAACATGTTTGATGAAATGCCGCAGAGGAACTTGGCTACTTGGAATGCGTATATTTCTAATGC GGTTCAGGATGGCCGGTCGTTGGATGCGGTTGGCGCTTTCAAGGAGTTTCTTTGTGTGCATGGAGAGCCGAATTCAATAA CTTTTTGTGCGTTTCTCAATGCGTGTGCTGATAGATTGGGTTTGCATCTTGGGCGTCAGTTACATGCGTTTATAATTCGT AGCGGATATAGGGAGGATGTATCTGTTGCCAATGGGCTTATTGATTTCTATGGGAAATGTGGGGACATTGTATCTTCTGA AATGGTTTTTAGTAGAATAGGCAGGAGCAGGAGGAATGTTGTTACTTGGTGCTCTATGCTTGCTGCTCTTGTGCAAAACC ATGAGGAAGAGAGGGCTTGTTTGGTCTTCCTGCAAGCAAGGAAAGAAGCTGAGCCGACGGATTTCATGATATCTAGTGTG CTCAGCGCTTGTGCTGAGCTCGGAGGACTTGAATTGGGGAGGTCAGTTCATGCTCTTGCTGTCAAGGCATGTGTGGACGA GAATATATTTGTTGGGAGTGCCCTTGTTGATTTGTATGGAAAATGTGGAAGCATAGAGAACGCAGAGCAAGTCTTTAGTG AAATGCCTCAGAGGAACATCGTCACTTGGAATGCAATGATCGGTGGGTATGCACATCAAGGTGATGTTGACATGGCATTG GGTCTATTTGAGGAGATGACACTGGGAAGCTGTGGCATAGCACCAAGTTATGTAACACTAGTTTCTGTGTTATCAGCGTG TAGTAGGGCAGGAGCAGTGGAGAGCGGCATGCATATATTTGAATCAATGAAAGAGATCTATAGAATTGAACCAGGTGCTG AGCATTATGCATGTGTTGTGGACCTTCTAGCAAGATCTGGTTTGGTAGACCGTGCATATGAATTTATACAAAATATGCCA ATTCATCCCACTATTTCAATATGGGGAGCTCTATTGGGAGCTTGCAGGATGCATGGGAAGACAAAGTTGGGAAAAGTTGC AGCTGAAAAATTATTTGAGCTTGATCCTGAAGATTCTGGCAATCATGTAGTGCTTTCTAACATGCTCGCATCTGCTGGCA GGTAATAATTTTAATATCCATGCTAATTTGTTTTCCTTCTTGATTGGTCTTGACCAGTTAGGTGAATTGATCATTTTATT CGATAGAACAACTTGCCTAATGCTAGTTAGTGTCCAAAACTTTCCTCCTTTTACATTTTTCCTTAGTTGCTAATGTAGTA AATTGAAACTGATACTGTCACTTCCATCTGACTCAACATTGTCCTGGCTCTTTTGCTCATGCTTGTTATTGCTAAATGCA GATGGGAAGAAGCCACTATTGTTAGGAAGGAAATGAAAGACATTGGTATTAAGAAAAATGTTGGTTATAGTTGGATTGCT GTGAAGAACAGGGTTCATGTTTTCCAAGCAAAGGATAGTTCTCACGAGAAGAACTCTGAAATTCAGGCAATGCTAGCTAA GCTCAGAGAGGAGATGAAGAAGGCTGGGTATTTTCCTGATACCAATCTTTCCCTGTTTGATTTAGAAGACGAAGAAAAGG CTTCAGAAGTTTGGTACCACAGTGAGAAGATTGCTCTTGCTTTTGGTCTCATAGCACTCCCTCATGGAGTGCCCATACGA ATCACAAAAAATCTTAGGATTTGCGGAGATTGCCATAGTGCCATTAAGTTCATCTCAAGAATTGTTGGCAGAGAAATTAT TGTGAGAGATAATAATCGTTTTCATCGCTTTAAGGATGGATGGTGCTCTTGTAAGGACTATTGGTAATTTATTGTGTTAT TTATCTGTCTCTTGGGTCATATTTGGTAGTTGGTACATCAATGGATATCACAAAGAAGCAAATTCACGACACAAAGTAGA ACAACCCTCCAAATTGGTTTGATGTGAGAGGTTTAGGATGGAGGAGAGAAGTGGATGGCAGGGACACAGGGTGAGGGCAG CGACGATGACGAGTATGATGGAAGAAGATGTGAGACTTCGGGGTTTGAAGTTATTTGAAATATTCCTATATTGTGAATTA CTAAATACACCATCAGTCCACATGTTGAACATTGTAAAGCTGGACCACCCTATAATCACTTACAAGAGCATCTCCATATT AGCATTATTCATGTGGACTCGTACCGTCACATGTGCTCTAAGTAACTCTCAAGCAACTTTTGTATATATATTTTGCTCCA ACTACAAGTTCTTAGCACTATTCATCTGGTCTCAACACACCACATTATTTATATTTTTTA
CDS sequence (LotjaGi4g1v0273900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACTTTCATCCTCCAAACCTGCTTAGTAGCTTGCTAGAATCAGCAGTTTCAACTCGCTCTCCTCTCCTTGGTCGTGC CGTCCATGCACAAATCATCAGAAGCCATGAAACCCCTCTGCCATCGTTCCTCTGCAACCACCTCATCAACATGTACTCCA AACTCGACCTTCTCAACTCAGCTCAACACGTTCTCTCACTCACCCACCTCCGCACCGTCGTCACCTGGACCTCCCTCATC GCCGGCTGCGTTAACAATGGCCGTTTCGTCGCTGCTCTCCTCCACTTCGTTAACATGCGCCGTGACTGCGTTCAGCCTAA TGACTTCACGTTTCCTTGTGTTTTCAAAGCTTCGTCGTCGTTGCAGATGCCCATCACCGGAAAACAGGCTCATGCTCTTG CTTTGAAGGGTGGCCAGATATATGATGTGTTTGTGGGGTGTAGTGCTTTTGATATGTATAGTAAAACTGGCCTAAGAGTT GATGCTCGGAACATGTTTGATGAAATGCCGCAGAGGAACTTGGCTACTTGGAATGCGTATATTTCTAATGCGGTTCAGGA TGGCCGGTCGTTGGATGCGGTTGGCGCTTTCAAGGAGTTTCTTTGTGTGCATGGAGAGCCGAATTCAATAACTTTTTGTG CGTTTCTCAATGCGTGTGCTGATAGATTGGGTTTGCATCTTGGGCGTCAGTTACATGCGTTTATAATTCGTAGCGGATAT AGGGAGGATGTATCTGTTGCCAATGGGCTTATTGATTTCTATGGGAAATGTGGGGACATTGTATCTTCTGAAATGGTTTT TAGTAGAATAGGCAGGAGCAGGAGGAATGTTGTTACTTGGTGCTCTATGCTTGCTGCTCTTGTGCAAAACCATGAGGAAG AGAGGGCTTGTTTGGTCTTCCTGCAAGCAAGGAAAGAAGCTGAGCCGACGGATTTCATGATATCTAGTGTGCTCAGCGCT TGTGCTGAGCTCGGAGGACTTGAATTGGGGAGGTCAGTTCATGCTCTTGCTGTCAAGGCATGTGTGGACGAGAATATATT TGTTGGGAGTGCCCTTGTTGATTTGTATGGAAAATGTGGAAGCATAGAGAACGCAGAGCAAGTCTTTAGTGAAATGCCTC AGAGGAACATCGTCACTTGGAATGCAATGATCGGTGGGTATGCACATCAAGGTGATGTTGACATGGCATTGGGTCTATTT GAGGAGATGACACTGGGAAGCTGTGGCATAGCACCAAGTTATGTAACACTAGTTTCTGTGTTATCAGCGTGTAGTAGGGC AGGAGCAGTGGAGAGCGGCATGCATATATTTGAATCAATGAAAGAGATCTATAGAATTGAACCAGGTGCTGAGCATTATG CATGTGTTGTGGACCTTCTAGCAAGATCTGGTTTGGTAGACCGTGCATATGAATTTATACAAAATATGCCAATTCATCCC ACTATTTCAATATGGGGAGCTCTATTGGGAGCTTGCAGGATGCATGGGAAGACAAAGTTGGGAAAAGTTGCAGCTGAAAA ATTATTTGAGCTTGATCCTGAAGATTCTGGCAATCATGTAGTGCTTTCTAACATGCTCGCATCTGCTGGCAGATGGGAAG AAGCCACTATTGTTAGGAAGGAAATGAAAGACATTGGTATTAAGAAAAATGTTGGTTATAGTTGGATTGCTGTGAAGAAC AGGGTTCATGTTTTCCAAGCAAAGGATAGTTCTCACGAGAAGAACTCTGAAATTCAGGCAATGCTAGCTAAGCTCAGAGA GGAGATGAAGAAGGCTGGGTATTTTCCTGATACCAATCTTTCCCTGTTTGATTTAGAAGACGAAGAAAAGGCTTCAGAAG TTTGGTACCACAGTGAGAAGATTGCTCTTGCTTTTGGTCTCATAGCACTCCCTCATGGAGTGCCCATACGAATCACAAAA AATCTTAGGATTTGCGGAGATTGCCATAGTGCCATTAAGTTCATCTCAAGAATTGTTGGCAGAGAAATTATTGTGAGAGA TAATAATCGTTTTCATCGCTTTAAGGATGGATGGTGCTCTTGTAAGGACTATTGGTAA
Protein sequence (LotjaGi4g1v0273900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNFHPPNLLSSLLESAVSTRSPLLGRAVHAQIIRSHETPLPSFLCNHLINMYSKLDLLNSAQHVLSLTHLRTVVTWTSLI AGCVNNGRFVAALLHFVNMRRDCVQPNDFTFPCVFKASSSLQMPITGKQAHALALKGGQIYDVFVGCSAFDMYSKTGLRV DARNMFDEMPQRNLATWNAYISNAVQDGRSLDAVGAFKEFLCVHGEPNSITFCAFLNACADRLGLHLGRQLHAFIIRSGY REDVSVANGLIDFYGKCGDIVSSEMVFSRIGRSRRNVVTWCSMLAALVQNHEEERACLVFLQARKEAEPTDFMISSVLSA CAELGGLELGRSVHALAVKACVDENIFVGSALVDLYGKCGSIENAEQVFSEMPQRNIVTWNAMIGGYAHQGDVDMALGLF EEMTLGSCGIAPSYVTLVSVLSACSRAGAVESGMHIFESMKEIYRIEPGAEHYACVVDLLARSGLVDRAYEFIQNMPIHP TISIWGALLGACRMHGKTKLGKVAAEKLFELDPEDSGNHVVLSNMLASAGRWEEATIVRKEMKDIGIKKNVGYSWIAVKN RVHVFQAKDSSHEKNSEIQAMLAKLREEMKKAGYFPDTNLSLFDLEDEEKASEVWYHSEKIALAFGLIALPHGVPIRITK NLRICGDCHSAIKFISRIVGREIIVRDNNRFHRFKDGWCSCKDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 4 | 125 | 122 | 3.7E-14 | ||
| PANTHER | 6 | 120 | 115 | 5.2E-111 | – | |
| Pfam | 72 | 117 | 46 | 1.1E-7 | ||
| ProSiteProfiles | 72 | 106 | 35 | 9.624 | ||
| TIGRFAM | 74 | 107 | 34 | 2.0E-4 | ||
| PANTHER | 126 | 221 | 96 | 5.2E-111 | – | |
| Gene3D | 131 | 223 | 93 | 5.9E-11 | ||
| ProSiteProfiles | 142 | 176 | 35 | 7.092 | ||
| ProSiteProfiles | 208 | 242 | 35 | 5.864 | ||
| PANTHER | 218 | 332 | 115 | 5.2E-111 | – | |
| Gene3D | 224 | 328 | 105 | 1.4E-11 | ||
| ProSiteProfiles | 243 | 273 | 31 | 6.325 | ||
| ProSiteProfiles | 276 | 310 | 35 | 6.862 | ||
| PANTHER | 329 | 542 | 214 | 5.2E-111 | – | |
| Gene3D | 332 | 404 | 73 | 1.6E-9 | ||
| ProSiteProfiles | 345 | 375 | 31 | 8.407 | ||
| Pfam | 376 | 425 | 50 | 3.6E-10 | ||
| ProSiteProfiles | 376 | 410 | 35 | 10.918 | ||
| TIGRFAM | 378 | 404 | 27 | 3.1E-7 | ||
| Gene3D | 405 | 522 | 118 | 1.0E-19 | ||
| ProSiteProfiles | 413 | 443 | 31 | 7.607 | ||
| ProSiteProfiles | 449 | 479 | 31 | 6.456 | ||
| ProSiteProfiles | 515 | 549 | 35 | 8.068 | ||
| Pfam | 524 | 547 | 24 | 0.32 | ||
| Pfam | 552 | 675 | 124 | 7.0E-40 | ||
| Coils | 568 | 588 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi4g1v0273900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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