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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0274300 |
| Transcript ID | LotjaGi4g1v0274300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin-responsive protein; TAIR: AT5G43700.1 AUX/IAA transcriptional regulator family protein; Swiss-Prot: sp|P32293|AX22A_VIGRR Auxin-induced protein 22A; TrEMBL-Plants: tr|V7CA22|V7CA22_PHAVU Auxin-induced protein; Found in the gene: LotjaGi4g1v0274300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:64380041..64381398) extracted from Lotus japonicus Gifu genome v1.2.
GCCCCAACTAAATTAACACCTCCATCCCCAGCTCTTACTCTGTCCCCCTAATTAGCTTACTATTCTAATCATATAAAATA GAAATACATCTATATTCATATCTCTATATATATACACATATATACATATTCCCTCAAATATTCTTATTCTTATTCTTGTA ACATTGCGCATGGATGGAGCTCCAACTTGGTCTCTCTCTCTTAACCAATTCTCCTGATGCCAAAGACCTCTTCCCTTGTA CTCACAATAACAAACGCACTTTCTCCCAAATTGTAGAAGATGCAGCAGAAAGCACCAACACAGACCCCGCCATGCTTCCT ACTCTGTCTCTTCTCCCCTTCACTAGGTAATCAATTATCAATCAACATTCAACACTCTTTTTTATTCAAAATTTTAATTA ATCTGTTTAAGTGTTTGAAAGACTTGATTATTAAATGTATTTATGATTATCATTAATGATTAATTGATCGAGCAGGATTA ACAACGACAAGGAGGAGGATGAAGAAGATGCTCCGGTGGGTTGGCCGCCAGTAAATTATAGGAGGAAGAAGCTCCGTTCT TCTATCAACCAAAACGGTATGTACGTGAAGGTGAAGATGGAGGGTGTAGGAATCGCCAGAAAGGTTGATCTCACCATGCA CCGTTCATTTCACTCGCTCAAGGATACCTTGATGGACATGTTTGGAACTCAATGTACGTTACATATAGTTATATACTTCT ATAATAATCAATTAATACATACATAAACAGGTTACTAGCTAATTAATTGATTAAGAGATTAACTCTTTTTCTTATTTTGT TAATTAATGGAATTAAACAGGTGATCAACAGTCAAAGAGCTATGAACTGGCTTATCAGGACAGGGAAGGTGATTGGCTTC TTGCTGAAGACGTGCCATGGAGAAATTTCATTCAGTGTGCACAGCGCCTCAAATTGCTTAAGACTAGAGTCTAGAGGATA AATATATCATATGGCTACACAACCTTCAACAGTGACTACTAATTTGTTTGTCTCTAGCTGCTTTAGAAACCCAGATAATT AATATAATGGATGGGCTTTCTTTTTTTGGTTAACTGTATTTAAATCCAGCTGTGGATACAAGTATAACTATAATTAACTT CCTAGCTATAAATTGTAAGGTCTTTGTCTATGACATATCAAAATTTTAGTTTACAATATGATAACATATAGTCCAAGTTA TGAATTGCTCGCATAATTATGTAATAATCCATTATCATAAACTGATGTGAGTGTTATTCATGCTCTGAACTTCATAGATT AAGCTAGATTAAACATTTTTTTTAGTGGTCAGACATGCAGTTTGTGTCGATATTCAATTGATACATACACATTAATGG
CDS sequence (LotjaGi4g1v0274300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGCTCCAACTTGGTCTCTCTCTCTTAACCAATTCTCCTGATGCCAAAGACCTCTTCCCTTGTACTCACAATAACAA ACGCACTTTCTCCCAAATTGTAGAAGATGCAGCAGAAAGCACCAACACAGACCCCGCCATGCTTCCTACTCTGTCTCTTC TCCCCTTCACTAGGATTAACAACGACAAGGAGGAGGATGAAGAAGATGCTCCGGTGGGTTGGCCGCCAGTAAATTATAGG AGGAAGAAGCTCCGTTCTTCTATCAACCAAAACGGTATGTACGTGAAGGTGAAGATGGAGGGTGTAGGAATCGCCAGAAA GGTTGATCTCACCATGCACCGTTCATTTCACTCGCTCAAGGATACCTTGATGGACATGTTTGGAACTCAATGTGATCAAC AGTCAAAGAGCTATGAACTGGCTTATCAGGACAGGGAAGGTGATTGGCTTCTTGCTGAAGACGTGCCATGGAGAAATTTC ATTCAGTGTGCACAGCGCCTCAAATTGCTTAAGACTAGAGTCTAG
Protein sequence (LotjaGi4g1v0274300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELQLGLSLLTNSPDAKDLFPCTHNNKRTFSQIVEDAAESTNTDPAMLPTLSLLPFTRINNDKEEDEEDAPVGWPPVNYR RKKLRSSINQNGMYVKVKMEGVGIARKVDLTMHRSFHSLKDTLMDMFGTQCDQQSKSYELAYQDREGDWLLAEDVPWRNF IQCAQRLKLLKTRV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 173 | 173 | 8.5E-52 | ||
| PANTHER | 1 | 173 | 173 | 8.5E-52 | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 1 | 16 | 16 | - | – | |
| Phobius | 3 | 11 | 9 | - | – | |
| Phobius | 12 | 16 | 5 | - | – | |
| Phobius | 17 | 174 | 158 | - | – | |
| Pfam | 23 | 172 | 150 | 1.2E-24 | ||
| SUPERFAMILY | 85 | 171 | 87 | 1.77E-14 | – | |
| Gene3D | 86 | 174 | 89 | 1.7E-27 | – | |
| ProSiteProfiles | 92 | 174 | 83 | 23.418 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi4g1v0274300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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