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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0276700 |
| Transcript ID | LotjaGi4g1v0276700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT5G40405.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405; TrEMBL-Plants: tr|K7L9R1|K7L9R1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0276700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:64659953..64661800) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAGTCTATGACCAGCATTGCAAAGCACCCCACCATTGCACTGCTAAAATCACACACCACACCCCAACAACTGAAGCA AATACACTCCCAGTTGGTTGTTAATGGCATCCTCAACCACCCTCATTTCCATGGCCAATTCGTTGCCACCATAGCCTTAC AAAACGAAGCCAACCTTCACTATGCCAACCAGGTCCTCCACCACCAATGTCACACCCCTAACCTCTTCACCCTCAACTCC ATGATCAGGGCCTACTCCAAAAGCTCCACTCCACACAAAAGCTTCAGTTTCTACACTCAAATTCTCCACTCCCCCAACAA CCTATCCCCTGACAACTACACCTTCAACTTCCTGGTTCGCTCTTGTGCACAGCTTCAGCTGCGGGAAACTGCTTTGTCTG TTCATGGTGCTCTCATAAAGCACGGGTTTGAGCATGACCCACATGTGCAAACTGGATTGATTTTCATGTATGCTGAATTG GGTTGTCTCAGTTCATGCCATGGAGTGTTTGAAAGTGTTTCTGAGTCAGATTTGGTTTGCCAAACTGCCATGTTACACGC TTGTGCTAAATGTGGTGATATTGACTCTGCAAGGAAGATGTTCGACGAAATGCCTCAGCGAGATCATATTGTGTGGAATG CGATGATTGCAGGGTATGCACATTGGGGAAGGTCAAGGGATGCTTTGAATTTGTTCCATTTGATGCAAATGGAGGGTGTT AAACTTAATGAGGTGTCCATGGTTTTGATCTTGTCTGCGTGCAGCCATATGGGGGCGTTGGATCAGGGAAGATGGGCTCA TGCGTATGTGGAGAGGTACAAATTTAGGATGACGGTGACGCTAGGAACTGCGATAATCGACATGTATGCGAAATGTGGGA ACATTGATAAGGCCATGGATGTTTTTTGGGGAATGAAGGAAAAGAATGTTTACACTTGGAGTAGTGTCATTGGTGGGTTG GCACTGAATGGTCTTGGCAGGGAGAGTCTAGATCTTTTTTCCCTTATGAAACAAGATGGAGTTCAGCCAAACGAAGTGAC CTTCATTTCTGTTCTAAGAGGGTGCTGTGTAGTTGGACTGGTGGAGGAAGGCCAAAAGCATTTTGATTCCATGAGGAATT TGTATGGGATTGACCCTCAACTTGAGCATTATGGCTTAATGGTTGATTTGTTTGGTCGAGCAGGGCGTGTTGAGGATGCT TTAAACTTCATCAATAGCATGCCTATGAAACCTCATGTTGGTGCATGGAGTGCTTTGCTTCATGCTTGTAGAAAGTATAA AAACAGGGAACTGGGTGAGCTTGCACTGAAAAGGATAGTGGAATTAGAGGACAAGAATGATGGTGCTTATGTTCTTTTAT CTAATATATATGCTGATTATAAGAATTGGGAAAAGGTTAGTAGTTTGCGGCAGACCATGAAAGCTAAAGGAGTGAAGAAA CTCCCCGGTTGCAGTGTCATAGAAGTTGATGGTGAAGTTCACGAGTTCATTGTTGGGGACAAGTCTCACCCAAGATATGA TGAGATTGAATTAAAACTAGAAGAGATCTATAGGAGTCTTAGATTGGCAGGGTATGTACCTAACACAAACCCTGTGCTTT TTGATATAGAGGAAGAGGAGAAAGAGGGTGCTGTGGGTAAACATAGTGAGAAAGTAGCAATTGCCTTTGGTTTAATTAGT TCGAAAGTTGTTCCCATTAGGGTTGTTATGAACCTAAGAATTTGCTGGGATTGCCATGATGTGGCAAAACTGGTGTCCAA ATTTTTTAACAGACAAATTATTATCCGAGACCGAAACAGGTTTCATCATTTTAAGGACGGCGAATGCTCCTGTAAAGATT ATTGGTAA
CDS sequence (LotjaGi4g1v0276700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGTCTATGACCAGCATTGCAAAGCACCCCACCATTGCACTGCTAAAATCACACACCACACCCCAACAACTGAAGCA AATACACTCCCAGTTGGTTGTTAATGGCATCCTCAACCACCCTCATTTCCATGGCCAATTCGTTGCCACCATAGCCTTAC AAAACGAAGCCAACCTTCACTATGCCAACCAGGTCCTCCACCACCAATGTCACACCCCTAACCTCTTCACCCTCAACTCC ATGATCAGGGCCTACTCCAAAAGCTCCACTCCACACAAAAGCTTCAGTTTCTACACTCAAATTCTCCACTCCCCCAACAA CCTATCCCCTGACAACTACACCTTCAACTTCCTGGTTCGCTCTTGTGCACAGCTTCAGCTGCGGGAAACTGCTTTGTCTG TTCATGGTGCTCTCATAAAGCACGGGTTTGAGCATGACCCACATGTGCAAACTGGATTGATTTTCATGTATGCTGAATTG GGTTGTCTCAGTTCATGCCATGGAGTGTTTGAAAGTGTTTCTGAGTCAGATTTGGTTTGCCAAACTGCCATGTTACACGC TTGTGCTAAATGTGGTGATATTGACTCTGCAAGGAAGATGTTCGACGAAATGCCTCAGCGAGATCATATTGTGTGGAATG CGATGATTGCAGGGTATGCACATTGGGGAAGGTCAAGGGATGCTTTGAATTTGTTCCATTTGATGCAAATGGAGGGTGTT AAACTTAATGAGGTGTCCATGGTTTTGATCTTGTCTGCGTGCAGCCATATGGGGGCGTTGGATCAGGGAAGATGGGCTCA TGCGTATGTGGAGAGGTACAAATTTAGGATGACGGTGACGCTAGGAACTGCGATAATCGACATGTATGCGAAATGTGGGA ACATTGATAAGGCCATGGATGTTTTTTGGGGAATGAAGGAAAAGAATGTTTACACTTGGAGTAGTGTCATTGGTGGGTTG GCACTGAATGGTCTTGGCAGGGAGAGTCTAGATCTTTTTTCCCTTATGAAACAAGATGGAGTTCAGCCAAACGAAGTGAC CTTCATTTCTGTTCTAAGAGGGTGCTGTGTAGTTGGACTGGTGGAGGAAGGCCAAAAGCATTTTGATTCCATGAGGAATT TGTATGGGATTGACCCTCAACTTGAGCATTATGGCTTAATGGTTGATTTGTTTGGTCGAGCAGGGCGTGTTGAGGATGCT TTAAACTTCATCAATAGCATGCCTATGAAACCTCATGTTGGTGCATGGAGTGCTTTGCTTCATGCTTGTAGAAAGTATAA AAACAGGGAACTGGGTGAGCTTGCACTGAAAAGGATAGTGGAATTAGAGGACAAGAATGATGGTGCTTATGTTCTTTTAT CTAATATATATGCTGATTATAAGAATTGGGAAAAGGTTAGTAGTTTGCGGCAGACCATGAAAGCTAAAGGAGTGAAGAAA CTCCCCGGTTGCAGTGTCATAGAAGTTGATGGTGAAGTTCACGAGTTCATTGTTGGGGACAAGTCTCACCCAAGATATGA TGAGATTGAATTAAAACTAGAAGAGATCTATAGGAGTCTTAGATTGGCAGGGTATGTACCTAACACAAACCCTGTGCTTT TTGATATAGAGGAAGAGGAGAAAGAGGGTGCTGTGGGTAAACATAGTGAGAAAGTAGCAATTGCCTTTGGTTTAATTAGT TCGAAAGTTGTTCCCATTAGGGTTGTTATGAACCTAAGAATTTGCTGGGATTGCCATGATGTGGCAAAACTGGTGTCCAA ATTTTTTAACAGACAAATTATTATCCGAGACCGAAACAGGTTTCATCATTTTAAGGACGGCGAATGCTCCTGTAAAGATT ATTGGTAA
Protein sequence (LotjaGi4g1v0276700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKSMTSIAKHPTIALLKSHTTPQQLKQIHSQLVVNGILNHPHFHGQFVATIALQNEANLHYANQVLHHQCHTPNLFTLNS MIRAYSKSSTPHKSFSFYTQILHSPNNLSPDNYTFNFLVRSCAQLQLRETALSVHGALIKHGFEHDPHVQTGLIFMYAEL GCLSSCHGVFESVSESDLVCQTAMLHACAKCGDIDSARKMFDEMPQRDHIVWNAMIAGYAHWGRSRDALNLFHLMQMEGV KLNEVSMVLILSACSHMGALDQGRWAHAYVERYKFRMTVTLGTAIIDMYAKCGNIDKAMDVFWGMKEKNVYTWSSVIGGL ALNGLGRESLDLFSLMKQDGVQPNEVTFISVLRGCCVVGLVEEGQKHFDSMRNLYGIDPQLEHYGLMVDLFGRAGRVEDA LNFINSMPMKPHVGAWSALLHACRKYKNRELGELALKRIVELEDKNDGAYVLLSNIYADYKNWEKVSSLRQTMKAKGVKK LPGCSVIEVDGEVHEFIVGDKSHPRYDEIELKLEEIYRSLRLAGYVPNTNPVLFDIEEEEKEGAVGKHSEKVAIAFGLIS SKVVPIRVVMNLRICWDCHDVAKLVSKFFNRQIIIRDRNRFHHFKDGECSCKDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 13 | 176 | 164 | 2.7E-15 | ||
| PANTHER | 61 | 264 | 204 | 3.6E-87 | – | |
| ProSiteProfiles | 74 | 104 | 31 | 7.366 | ||
| Pfam | 76 | 99 | 24 | 0.69 | ||
| ProSiteProfiles | 111 | 145 | 35 | 8.035 | ||
| Gene3D | 177 | 277 | 101 | 6.2E-23 | ||
| ProSiteProfiles | 177 | 207 | 31 | 9.69 | ||
| TIGRFAM | 180 | 209 | 30 | 4.4E-6 | ||
| Pfam | 182 | 207 | 26 | 3.0E-5 | ||
| ProSiteProfiles | 208 | 242 | 35 | 10.896 | ||
| Pfam | 208 | 255 | 48 | 1.0E-8 | ||
| TIGRFAM | 210 | 244 | 35 | 4.2E-8 | ||
| ProSiteProfiles | 243 | 277 | 35 | 5.755 | ||
| PANTHER | 261 | 474 | 214 | 3.6E-87 | – | |
| ProSiteProfiles | 278 | 308 | 31 | 8.002 | ||
| Gene3D | 281 | 493 | 213 | 1.1E-40 | ||
| TIGRFAM | 283 | 310 | 28 | 0.0019 | ||
| Pfam | 308 | 356 | 49 | 1.6E-10 | ||
| ProSiteProfiles | 309 | 343 | 35 | 11.016 | ||
| TIGRFAM | 311 | 345 | 35 | 1.2E-5 | ||
| ProSiteProfiles | 344 | 374 | 31 | 8.21 | ||
| ProSiteProfiles | 380 | 410 | 31 | 7.3 | ||
| Pfam | 383 | 408 | 26 | 0.029 | ||
| ProSiteProfiles | 446 | 480 | 35 | 7.059 | ||
| Pfam | 482 | 605 | 124 | 1.4E-36 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi4g1v0276700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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